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David Mayerich, Ph.D. - Publications

Affiliations: 
Department of Electrical and Computer Engineering University of Houston, Houston, TX, United States 
Website:
http://stim.ee.uh.edu/personnel/
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Gajjela CC, Brun M, Mankar R, Corvigno S, Kennedy N, Zhong Y, Liu J, Sood AK, Mayerich D, Berisha S, Reddy R. Leveraging mid-infrared spectroscopic imaging and deep learning for tissue subtype classification in ovarian cancer. The Analyst. PMID 37218522 DOI: 10.1039/d2an01035f  0.79
2022 Mankar R, Gajjela CC, Bueso-Ramos CE, Yin CC, Mayerich D, Reddy RK. Polarization Sensitive Photothermal Mid-Infrared Spectroscopic Imaging of Human Bone Marrow Tissue. Applied Spectroscopy. 76: 508-518. PMID 35236126 DOI: 10.1177/00037028211063513  0.796
2021 Khajavi B, Sun R, Chawla HS, Le HH, Singh M, Schill AW, Dickinson ME, Mayerich D, Larin KV. Multimodal high-resolution embryonic imaging with light sheet fluorescence microscopy and optical coherence tomography. Optics Letters. 46: 4180-4183. PMID 34469969 DOI: 10.1364/OL.430202  0.348
2021 Mankar R, Gajjela CC, Shahraki FF, Prasad S, Mayerich D, Reddy R. Multi-modal image sharpening in fourier transform infrared (FTIR) microscopy. The Analyst. PMID 34198314 DOI: 10.1039/d1an00103e  0.834
2020 Becker JU, Mayerich D, Padmanabhan M, Barratt J, Ernst A, Boor P, Cicalese PA, Mohan C, Nguyen HV, Roysam B. Artificial intelligence and machine learning in nephropathology. Kidney International. PMID 32475607 DOI: 10.1016/J.Kint.2020.02.027  0.315
2020 Guo J, Artur C, Womack T, Eriksen JL, Mayerich D. Multiplex protein-specific microscopy with ultraviolet surface excitation. Biomedical Optics Express. 11: 99-108. PMID 32010503 DOI: 10.1364/Boe.11.000099  0.802
2020 Qin Z, Dai S, Gajjela CC, Wang C, Hadjiev VG, Yang G, Li J, Zhong X, Tang Z, Yao Y, Guloy AM, Reddy R, Mayerich D, Deng L, Yu Q, et al. Spontaneous Formation of 2D/3D Heterostructures on the Edges of 2D Ruddlesden–Popper Hybrid Perovskite Crystals Chemistry of Materials. 32: 5009-5015. DOI: 10.1021/Acs.Chemmater.0C00419  0.676
2020 Yue S, Gamage G, Mohebinia M, Mayerich D, Talari V, Deng Y, Tian F, Dai S, Sun H, Hadjiev V, Zhang W, Feng G, Hu J, Liu D, Wang Z, et al. Photoluminescence mapping and time-domain thermo-photoluminescence for rapid imaging and measurement of thermal conductivity of boron arsenide Materials Today Physics. 13: 100194. DOI: 10.1016/J.Mtphys.2020.100194  0.336
2019 Mankar R, Bueso-Ramos CE, Yin CC, Hidalgo Lopez JEE, Berisha S, Kansiz M, Mayerich D. Automated osteosclerosis grading of clinical biopsies using infrared spectroscopic imaging. Analytical Chemistry. PMID 31793292 DOI: 10.1021/Acs.Analchem.9B03015  0.768
2019 Guo J, Artur C, Eriksen JL, Mayerich D. Three-Dimensional Microscopy by Milling with Ultraviolet Excitation. Scientific Reports. 9: 14578. PMID 31601843 DOI: 10.1038/S41598-019-50870-1  0.834
2019 Guo J, Keller KA, Govyadinov P, Ruchhoeft P, Slater JH, Mayerich D. Accurate flow in augmented networks (AFAN): an approach to generating three-dimensional biomimetic microfluidic networks with controlled flow. Analytical Methods : Advancing Methods and Applications. 11: 8-16. PMID 31490456 DOI: 10.1039/C8Ay01798K  0.765
2019 Lotfollahi M, Berisha S, Saadatifard L, Montier L, Žiburkus J, Mayerich D. Three-dimensional GPU-accelerated active contours for automated localization of cells in large images. Plos One. 14: e0215843. PMID 31173591 DOI: 10.1371/Journal.Pone.0215843  0.754
2019 Lotfollahi M, Berisha S, Daeinejad D, Mayerich D. Digital Staining of High-Definition Fourier Transform Infrared (FT-IR) Images Using Deep Learning. Applied Spectroscopy. 3702818819857. PMID 30657342 DOI: 10.1177/0003702818819857  0.803
2019 Berisha S, Lotfollahi M, Jahanipour J, Gurcan I, Walsh M, Bhargava R, Van Nguyen H, Mayerich D. Deep learning for FTIR histology: leveraging spatial and spectral features with convolutional neural networks. The Analyst. PMID 30644947 DOI: 10.1039/C8An01495G  0.804
2018 Pahlow S, Weber K, Popp J, Wood BR, Kochan K, Rüther A, Perez-Guaita D, Heraud P, Stone N, Dudgeon A, Gardner B, Reddy R, Mayerich D, Bhargava R. Application of Vibrational Spectroscopy and Imaging to Point-of-Care Medicine: A Review. Applied Spectroscopy. 72: 52-84. PMID 30265133 DOI: 10.1177/0003702818791939  0.374
2018 Lu H, Li J, Martinez Paniagua MA, Bandey IN, Amritkar A, Singh H, Mayerich D, Varadarajan N, Roysam B. TIMING 2.0: High-throughput single-cell profiling of dynamic cell-cell interactions by time-lapse imaging microscopy in nanowell grids. Bioinformatics (Oxford, England). PMID 30084956 DOI: 10.1093/Bioinformatics/Bty676  0.742
2018 Govyadinov PA, Womack T, Chen G, Mayerich D, Eriksen J. Robust Tracing and Visualization of Heterogeneous Microvascular Networks. Ieee Transactions On Visualization and Computer Graphics. PMID 29993636 DOI: 10.1109/Tvcg.2018.2818701  0.806
2018 Saadatifard L, Abbott LC, Montier L, Ziburkus J, Mayerich D. Robust Cell Detection for Large-Scale 3D Microscopy Using GPU-Accelerated Iterative Voting. Frontiers in Neuroanatomy. 12: 28. PMID 29755325 DOI: 10.3389/Fnana.2018.00028  0.801
2018 Ran S, Berisha S, Mankar R, Shih WC, Mayerich D. Mitigating fringing in discrete frequency infrared imaging using time-delayed integration. Biomedical Optics Express. 9: 832-843. PMID 29552416 DOI: 10.1364/Boe.9.000832  0.792
2018 Artur CG, Womack T, Zhao F, Eriksen JL, Mayerich D, Shih WC. Plasmonic nanoparticle-based expansion microscopy with surface-enhanced Raman and dark-field spectroscopic imaging. Biomedical Optics Express. 9: 603-615. PMID 29552397 DOI: 10.1364/Boe.9.000603  0.791
2018 Mankar R, Walsh MJ, Bhargava R, Prasad S, Mayerich D. Selecting optimal features from Fourier transform infrared spectroscopy for discrete-frequency imaging. The Analyst. PMID 29404544 DOI: 10.1039/C7An01888F  0.814
2017 Berisha S, van Dijk T, Bhargava R, Carney PS, Mayerich D. BIM-Sim: Interactive Simulation of Broadband Imaging Using Mie Theory. Frontiers in Physics. 5. PMID 29170738 DOI: 10.3389/Fphy.2017.00005  0.783
2017 Wu C, Le H, Ran S, Singh M, Larina IV, Mayerich D, Dickinson ME, Larin KV. Comparison and combination of rotational imaging optical coherence tomography and selective plane illumination microscopy for embryonic study. Biomedical Optics Express. 8: 4629-4639. PMID 29082090 DOI: 10.1364/Boe.8.004629  0.734
2017 Chen Wu, Shihao Ran, Le H, Singh M, Larina IV, Mayerich D, Dickinson ME, Larin KV. A dual-modality optical coherence tomography and selective plane illumination microscopy system for mouse embryonic imaging. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2017: 4038-4040. PMID 29060783 DOI: 10.1117/12.2252677  0.527
2017 Heintz KA, Mayerich D, Slater JH. Image-guided, Laser-based Fabrication of Vascular-derived Microfluidic Networks. Journal of Visualized Experiments : Jove. PMID 28117805 DOI: 10.3791/55101  0.462
2016 Miller DE, Shah RS, Wencong Zhang, Jaewook Yoo, Jaerock Kwon, Mayerich D, Keyser J, Abbott LC, Yoonsuck Choe. Fast submicrometer-scale imaging of whole zebrafish using the knife-edge scanning microscope. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 5901-5904. PMID 28269597 DOI: 10.1109/EMBC.2016.7592071  0.439
2016 Miller DE, Shah RS, Zhang W, Yoo J, Kwon J, Mayerich D, Keyser J, Abbott LC, Choe Y, Miller DE, Shah RS, Wencong Zhang, Jaewook Yoo, Jaerock Kwon, Mayerich D, ... ... Mayerich D, et al. Fast submicrometer-scale imaging of whole zebrafish using the knife-edge scanning microscope. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 5901-5904. PMID 28227853 DOI: 10.1109/EMBC.2016.7592071  0.439
2016 Singh M, Wu C, Mayerich D, Dickinson ME, Larina IV, Larin KV, Singh M, Wu C, Mayerich D, Dickinson ME, Larina IV, Larin KV, Larina IV, Singh M, Larin KV, ... Mayerich D, et al. Multimodal embryonic imaging using optical coherence tomography, selective plane illumination microscopy, and optical projection tomography. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 3922-3925. PMID 28227372 DOI: 10.1109/EMBC.2016.7591585  0.414
2016 Berisha S, Chang S, Saki S, Daeinejad D, He Z, Mankar R, Mayerich D. SIproc: an open-source biomedical data processing platform for large hyperspectral images. The Analyst. PMID 27924319 DOI: 10.1039/C6An02082H  0.799
2016 Wu C, Ran S, Le HH, Singh M, Larina IV, Mayerich D, Dickinson ME, Larin KV. Comparison of rotational imaging optical coherence tomography and selective plane illumination microscopy for embryonic study Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9716. DOI: 10.1117/12.2209147  0.732
2016 Govyadinov PA, Mayerich D. Automated GPU-Accelerated Segmentation of Volumetric Fiber Networks Using a Predictor-Corrector Algorithm. Microscopy and Microanalysis. 22: 1038-1039. DOI: 10.1017/S1431927616006036  0.753
2016 Mankar R, Verma V, Walsh M, Bueso-Ramos C, Mayerich D. Imaging and Feature Selection Using GA-FDA Algorithm for the Classification of Mid-Infrared Biomedical Images Microscopy and Microanalysis. 22: 1008-1009. DOI: 10.1017/S1431927616005882  0.811
2016 Saadatifard L, Mayerich D. Three Dimensional Parallel Automated Segmentation of Neural Soma in Large KESM Images of Brain Tissue Microscopy and Microanalysis. 22: 788-789. DOI: 10.1017/S1431927616004797  0.453
2015 Deutsch B, Reddy R, Mayerich D, Bhargava R, Carney PS. Compositional prior information in computed infrared spectroscopic imaging. Journal of the Optical Society of America. a, Optics, Image Science, and Vision. 32: 1126-31. PMID 26367047 DOI: 10.1364/Josaa.32.001126  0.434
2015 Leslie LS, Wrobel TP, Mayerich D, Bindra S, Emmadi R, Bhargava R. High definition infrared spectroscopic imaging for lymph node histopathology. Plos One. 10: e0127238. PMID 26039216 DOI: 10.1371/Journal.Pone.0127238  0.461
2015 Mayerich D, Walsh MJ, Kadjacsy-Balla A, Ray PS, Hewitt SM, Bhargava R. Stain-less staining for computed histopathology. Technology. 3: 27-31. PMID 26029735 DOI: 10.1142/S2339547815200010  0.326
2014 Mayerich D, van Dijk T, Walsh MJ, Schulmerich MV, Carney PS, Bhargava R. On the importance of image formation optics in the design of infrared spectroscopic imaging systems. The Analyst. 139: 4031-6. PMID 24936526 DOI: 10.1039/C3An01687K  0.412
2013 van Dijk T, Mayerich D, Bhargava R, Carney PS. Rapid spectral-domain localization. Optics Express. 21: 12822-30. PMID 23736501 DOI: 10.1364/Oe.21.012822  0.428
2013 Mayerich D, Walsh M, Schulmerich M, Bhargava R. Real-time interactive data mining for chemical imaging information: application to automated histopathology. Bmc Bioinformatics. 14: 156. PMID 23651487 DOI: 10.1186/1471-2105-14-156  0.453
2013 van Dijk T, Mayerich D, Carney PS, Bhargava R. Recovery of absorption spectra from Fourier transform infrared (FT-IR) microspectroscopic measurements of intact spheres. Applied Spectroscopy. 67: 546-52. PMID 23643044 DOI: 10.1366/12-06847  0.323
2012 Mayerich D, Bjornsson C, Taylor J, Roysam B. NetMets: software for quantifying and visualizing errors in biological network segmentation. Bmc Bioinformatics. 13: S7. PMID 22607549 DOI: 10.1186/1471-2105-13-S8-S7  0.402
2012 Walsh MJ, Mayerich D, Kajdacsy-Balla A, Bhargava R. High-resolution mid-infrared imaging for disease diagnosis Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8219. DOI: 10.1117/12.909339  0.566
2012 Reddy R, Mayerich D, Walsh M, Schulmerich M, Carney PS, Bhargava R. Optimizing the design of FT-IR spectroscopic imaging instruments to obtain increased spatial resolution of chemical species Proceedings - International Symposium On Biomedical Imaging. 354-357. DOI: 10.1109/ISBI.2012.6235557  0.426
2011 Chung JR, Sung C, Mayerich D, Kwon J, Miller DE, Huffman T, Keyser J, Abbott LC, Choe Y. Multiscale exploration of mouse brain microstructures using the knife-edge scanning microscope brain atlas. Frontiers in Neuroinformatics. 5: 29. PMID 22275895 DOI: 10.3389/Fninf.2011.00029  0.411
2011 Choe Y, Mayerich D, Kwon J, Miller DE, Sung C, Chung JR, Huffman T, Keyser J, Abbott LC. Specimen preparation, imaging, and analysis protocols for knife-edge scanning microscopy. Journal of Visualized Experiments : Jove. PMID 22215068 DOI: 10.3791/3248  0.47
2011 Mayerich D, Kwon J, Sung C, Abbott L, Keyser J, Choe Y. Fast macro-scale transmission imaging of microvascular networks using KESM. Biomedical Optics Express. 2: 2888-96. PMID 22091443 DOI: 10.1364/Boe.2.002888  0.481
2010 Bhargava R, Reddy RK, Ip J, Pounder FN, Schulmerich MV, Mayerich D, Llora X, Kong R, Walsh MJ. Infrared Spectroscopic Imaging for Label-free and Automated Histopathology Frontiers in Optics. DOI: 10.1364/Fio.2010.Fwx2  0.531
2010 Choe Y, Abbott LC, Ponte G, Keyser J, Kwon J, Mayerich D, Miller D, Han D, Grimaldi AM, Fiorito G, Edelman DB, McKinstry JL. Charting out the octopus connectome at submicron resolution using the knife-edge scanning microscope Bmc Neuroscience. 11. DOI: 10.1186/1471-2202-11-S1-P136  0.481
2009 Mayerich D, Keyser J. Hardware accelerated segmentation of complex volumetric filament networks. Ieee Transactions On Visualization and Computer Graphics. 15: 670-81. PMID 19423890 DOI: 10.1109/Tvcg.2008.196  0.377
2008 Mayerich D, Abbott L, McCormick B. Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain. Journal of Microscopy. 231: 134-43. PMID 18638197 DOI: 10.1111/J.1365-2818.2008.02024.X  0.49
2006 Melek Z, Mayerich D, Yuksel C, Keyser J. Visualization of fibrous and thread-like data. Ieee Transactions On Visualization and Computer Graphics. 12: 1165-72. PMID 17080848 DOI: 10.1109/Tvcg.2006.197  0.393
2004 McCormick BH, Mayerich DM. Three-Dimensional Imaging Using Knife-Edge Scanning Microscopy Microscopy and Microanalysis. 10: 1466-1467. DOI: 10.1017/S143192760488070X  0.379
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