Benjamin M. Akiyama, Ph.D. - Publications

Affiliations: 
Molecular Cell and Developmental Biology University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
structure and function of the telomerase ribonucleoprotein

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Graham ME, Merrick C, Akiyama BM, Szucs MJ, Leach S, Kieft JS, Beckham JD. Zika virus dumbbell-1 structure is critical for sfRNA presence and cytopathic effect during infection. Mbio. e0110823. PMID 37417764 DOI: 10.1128/mbio.01108-23  0.388
2021 Akiyama BM, Graham ME, O Donoghue Z, Beckham JD, Kieft JS. Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Research. 49: 7122-7138. PMID 34133732 DOI: 10.1093/nar/gkab462  0.544
2021 Akiyama BM, Graham ME, O Donoghue Z, Beckham JD, Kieft JS. Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication. Nucleic Acids Research. 49: 7122-7138. PMID 34133732 DOI: 10.1093/nar/gkab462  0.544
2020 Jones RA, Steckelberg AL, Vicens Q, Szucs MJ, Akiyama BM, Kieft JS. Different tertiary interactions create the same important 3-D features in a distinct flavivirus xrRNA. Rna (New York, N.Y.). PMID 33004436 DOI: 10.1261/rna.077065.120  0.498
2018 Steckelberg AL, Akiyama BM, Costantino DA, Sit TL, Nix JC, Kieft JS. A folded viral noncoding RNA blocks host cell exoribonucleases through a conformationally dynamic RNA structure. Proceedings of the National Academy of Sciences of the United States of America. PMID 29866852 DOI: 10.1073/Pnas.1802429115  0.619
2016 Akiyama BM, Laurence HM, Massey AR, Costantino DA, Xie X, Yang Y, Shi PY, Nix JC, Beckham JD, Kieft JS. Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease. Science (New York, N.Y.). 354: 1148-1152. PMID 27934765 DOI: 10.1126/Science.Aah3963  0.515
2016 Akiyama BM, Eiler D, Kieft JS. Structured RNAs that evade or confound exonucleases: function follows form. Current Opinion in Structural Biology. 36: 40-47. PMID 26797676 DOI: 10.1016/J.Sbi.2015.12.006  0.586
2015 Jansson LI, Akiyama BM, Ooms A, Lu C, Rubin SM, Stone MD. Structural basis of template-boundary definition in Tetrahymena telomerase. Nature Structural & Molecular Biology. PMID 26436828 DOI: 10.1038/Nsmb.3101  0.713
2015 Akiyama BM, Parks JW, Stone MD. The telomerase essential N-terminal domain promotes DNA synthesis by stabilizing short RNA-DNA hybrids. Nucleic Acids Research. 43: 5537-49. PMID 25940626 DOI: 10.1093/Nar/Gkv406  0.683
2014 Akiyama BM, Stone MD. Direct Visualization of DNA Dynamics During the Telomerase Catalytic Cycle Reveals the Function of a Conserved Telomerase Domain Biophysical Journal. 106: 429a-430a. DOI: 10.1016/J.Bpj.2013.11.2420  0.704
2013 Akiyama BM, Gomez A, Stone MD. A conserved motif in tetrahymena thermophila telomerase reverse transcriptase is proximal to the RNA template and is essential for boundary definition Journal of Biological Chemistry. 288: 22141-22149. PMID 23760279 DOI: 10.1074/Jbc.M113.452425  0.708
2013 Akiyama BM, Stone MD. Structural biology: A solution to the telomerase puzzle Nature. 496: 177-178. PMID 23552897 DOI: 10.1038/Nature12090  0.6
2012 Akiyama BM, Loper J, Najarro K, Stone MD. The C-terminal domain of Tetrahymena thermophila telomerase holoenzyme protein p65 induces multiple structural changes in telomerase RNA Rna. 18: 653-660. PMID 22315458 DOI: 10.1261/Rna.031377.111  0.657
2011 Berman AJ, Akiyama BM, Stone MD, Cech TR. The RNA accordion model for template positioning by telomerase RNA during telomeric DNA synthesis. Nature Structural & Molecular Biology. 18: 1371-5. PMID 22101935 DOI: 10.1038/Nsmb.2174  0.713
2011 Hengesbach M, Akiyama BM, Stone MD. Single-molecule analysis of telomerase structure and function Current Opinion in Chemical Biology. 15: 846-852. PMID 22057212 DOI: 10.1016/J.Cbpa.2011.10.008  0.61
2009 Akiyama BM, Stone MD. Assembly of complex RNAs by splinted ligation. Methods in Enzymology. 469: 27-46. PMID 20946783 DOI: 10.1016/S0076-6879(09)69002-9  0.666
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