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Jason D. Fernandes, Ph.D. - Publications

Affiliations: 
2013 Pharmaceutical Sciences and Pharmacogenomics University of California, San Francisco, San Francisco, CA 
Area:
Evolution and Development Biology, Virology Biology
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Safari M, Jayaraman B, Yang S, Smith C, Fernandes JD, Frankel AD. Functional and structural segregation of overlapping helices in HIV-1. Elife. 11. PMID 35511220 DOI: 10.7554/eLife.72482  0.672
2020 Fernandes JD, Hinrichs AS, Clawson H, Gonzalez JN, Lee BT, Nassar LR, Raney BJ, Rosenbloom KR, Nerli S, Rao AA, Schmelter D, Fyfe A, Maulding N, Zweig AS, Lowe TM, et al. The UCSC SARS-CoV-2 Genome Browser. Nature Genetics. PMID 32908258 DOI: 10.1038/S41588-020-0700-8  0.333
2020 Okhovat M, Nevonen KA, Davis BA, Michener P, Ward S, Milhaven M, Harshman L, Sohota A, Fernandes JD, Salama SR, O'Neill RJ, Ahituv N, Veeramah KR, Carbone L. Co-option of the lineage-specific retrotransposon in the gibbon genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 32690705 DOI: 10.1073/Pnas.2006038117  0.437
2020 Fernandes JD, Zamudio-Hurtado A, Clawson H, Kent WJ, Haussler D, Salama SR, Haeussler M. The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families. Mobile Dna. 11: 13. PMID 32266012 DOI: 10.1186/S13100-020-00208-W  0.301
2019 Jayaraman B, Fernandes JD, Yang S, Smith C, Frankel AD. Highly Mutable Linker Regions Regulate HIV-1 Rev Function and Stability. Scientific Reports. 9: 5139. PMID 30914719 DOI: 10.1038/S41598-019-41582-7  0.718
2016 Fernandes JD, Faust TB, Strauli NB, Smith C, Crosby DC, Nakamura RL, Hernandez RD, Frankel AD. Functional Segregation of Overlapping Genes in HIV. Cell. 167: 1762-1773.e12. PMID 27984726 DOI: 10.1016/J.Cell.2016.11.031  0.73
2016 Jayaraman B, Smith AM, Fernandes JD, Frankel AD. Oligomeric viral proteins: small in size, large in presence. Critical Reviews in Biochemistry and Molecular Biology. 1-16. PMID 27685368 DOI: 10.1080/10409238.2016.1215406  0.712
2016 Fernandes JD, Booth DS, Frankel AD. A structurally plastic ribonuceloprotein complex mediates post-transcriptional gene regulation in HIV-1. Wiley Interdisciplinary Reviews. Rna. PMID 26929078 DOI: 10.1002/Wrna.1342  0.72
2012 Fernandes J, Jayaraman B, Frankel A. The HIV-1 Rev response element: an RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex. Rna Biology. 9: 6-11. PMID 22258145 DOI: 10.4161/Rna.9.1.18178  0.725
2012 Jäger S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, Shales M, Mercenne G, Pache L, Li K, Hernandez H, Jang GM, Roth SL, Akiva E, Marlett J, ... ... Fernandes J, et al. Global landscape of HIV-human protein complexes. Nature. 481: 365-70. PMID 22190034 DOI: 10.1038/Nature10719  0.691
2011 Jäger S, Gulbahce N, Cimermancic P, Kane J, He N, Chou S, D'Orso I, Fernandes J, Jang G, Frankel AD, Alber T, Zhou Q, Krogan NJ. Purification and characterization of HIV-human protein complexes. Methods (San Diego, Calif.). 53: 13-9. PMID 20708689 DOI: 10.1016/J.Ymeth.2010.08.007  0.65
2009 Bushman FD, Malani N, Fernandes J, D'Orso I, Cagney G, Diamond TL, Zhou H, Hazuda DJ, Espeseth AS, König R, Bandyopadhyay S, Ideker T, Goff SP, Krogan NJ, Frankel AD, et al. Host cell factors in HIV replication: meta-analysis of genome-wide studies. Plos Pathogens. 5: e1000437. PMID 19478882 DOI: 10.1371/Journal.Ppat.1000437  0.695
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