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Alan M. Zahler - Publications

Affiliations: 
University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Molecular Biology, Biochemistry
Website:
https://mcd.ucsc.edu/faculty/zahler.html
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sarka K, Katzman S, Zahler AM. A Role for SNU66 in Maintaining 5' Splice Site Identity During Spliceosome Assembly. Rna (New York, N.Y.). PMID 38443114 DOI: 10.1261/rna.079971.124  0.329
2024 Osterhoudt K, Bagno OR, Katzman S, Zahler AM. Spliceosomal helicases DDX41/SACY-1 and PRP22/MOG-5 both contribute to proofreading against proximal 3' splice site usage. Rna (New York, N.Y.). PMID 38282418 DOI: 10.1261/rna.079888.123  0.444
2022 Cartwright-Acar CH, Osterhoudt K, Suzuki JMNGL, Gomez DR, Katzman S, Zahler AM. A forward genetic screen in C. elegans identifies conserved residues of spliceosomal proteins PRP8 and SNRNP200/BRR2 with a role in maintaining 5' splice site identity. Nucleic Acids Research. 50: 11834-11857. PMID 36321655 DOI: 10.1093/nar/gkac991  0.379
2022 Suzuki JMNGL, Osterhoudt K, Cartwright-Acar CH, Gomez DR, Katzman S, Zahler AM. A genetic screen in C. elegans reveals roles for KIN17 and PRCC in maintaining 5' splice site identity. Plos Genetics. 18: e1010028. PMID 35143478 DOI: 10.1371/journal.pgen.1010028  0.454
2019 Mayerle M, Yitiz S, Soulette C, Rogel LE, Ramirez A, Ragle JM, Katzman S, Guthrie C, Zahler AM. Prp8 impacts cryptic but not alternative splicing frequency. Proceedings of the National Academy of Sciences of the United States of America. PMID 30674666 DOI: 10.1073/Pnas.1819020116  0.542
2018 Zahler AM, Rogel LE, Glover ML, Yitiz S, Ragle JM, Katzman S. SNRP-27, the C. elegans homolog of the tri-snRNP 27K protein, has a role in 5' splice site positioning in the spliceosome. Rna (New York, N.Y.). PMID 30006499 DOI: 10.1261/Rna.066878.118  0.53
2017 Neeb ZT, Hogan DJ, Katzman S, Zahler AM. Preferential expression of scores of functionally and evolutionarily diverse DNA and RNA-binding proteins during Oxytricha trifallax macronuclear development. Plos One. 12: e0170870. PMID 28207760 DOI: 10.1371/Journal.Pone.0170870  0.474
2015 Ragle JM, Katzman S, Akers TF, Barberan-Soler S, Zahler AM. Coordinated tissue-specific regulation of adjacent alternative 3' splice sites in C. elegans. Genome Research. 25: 982-94. PMID 25922281 DOI: 10.1101/Gr.186783.114  0.81
2014 Neeb ZT, Zahler AM. An expanding world of small RNAs. Developmental Cell. 28: 111-2. PMID 24480639 DOI: 10.1016/J.Devcel.2014.01.009  0.346
2012 Zahler AM, Neeb ZT, Lin A, Katzman S. Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus. Plos One. 7: e42371. PMID 22900016 DOI: 10.1371/Journal.Pone.0042371  0.413
2012 Zahler AM. Pre-mRNA splicing and its regulation in Caenorhabditis elegans. Wormbook : the Online Review of C. Elegans Biology. 1-21. PMID 22467343 DOI: 10.1895/Wormbook.1.31.2  0.602
2011 Lambert NJ, Gu SG, Zahler AM. The conformation of microRNA seed regions in native microRNPs is prearranged for presentation to mRNA targets. Nucleic Acids Research. 39: 4827-35. PMID 21335607 DOI: 10.1093/Nar/Gkr077  0.708
2011 Barberan-Soler S, Medina P, Estella J, Williams J, Zahler AM. Co-regulation of alternative splicing by diverse splicing factors in Caenorhabditis elegans. Nucleic Acids Research. 39: 666-74. PMID 20805248 DOI: 10.1093/Nar/Gkq767  0.82
2009 Kabat JL, Barberan-Soler S, Zahler AM. HRP-2, the Caenorhabditis elegans homolog of mammalian heterogeneous nuclear ribonucleoproteins Q and R, is an alternative splicing factor that binds to UCUAUC splicing regulatory elements. The Journal of Biological Chemistry. 284: 28490-7. PMID 19706616 DOI: 10.1074/Jbc.M109.023101  0.747
2009 Barberan-Soler S, Lambert NJ, Zahler AM. Global analysis of alternative splicing uncovers developmental regulation of nonsense-mediated decay in C. elegans. Rna (New York, N.Y.). 15: 1652-60. PMID 19617316 DOI: 10.1261/Rna.1711109  0.804
2009 Dassah M, Patzek S, Hunt VM, Medina PE, Zahler AM. A genetic screen for suppressors of a mutated 5' splice site identifies factors associated with later steps of spliceosome assembly. Genetics. 182: 725-34. PMID 19380478 DOI: 10.1534/Genetics.109.103473  0.782
2008 Barberan-Soler S, Zahler AM. Alternative splicing and the steady-state ratios of mRNA isoforms generated by it are under strong stabilizing selection in Caenorhabditis elegans. Molecular Biology and Evolution. 25: 2431-7. PMID 18718918 DOI: 10.1093/Molbev/Msn181  0.793
2008 Barberan-Soler S, Zahler AM. Alternative splicing regulation during C. elegans development: splicing factors as regulated targets. Plos Genetics. 4: e1000001. PMID 18454200 DOI: 10.1371/Journal.Pgen.1000001  0.816
2007 Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM. Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans Rna. 13: 1492-1504. PMID 17652138 DOI: 10.1261/Rna.581907  0.763
2006 Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM. Intronic alternative splicing regulators identified by comparative genomics in nematodes. Plos Computational Biology. 2: e86. PMID 16839192 DOI: 10.1371/Journal.Pcbi.0020086  0.746
2005 Zahler AM. Alternative splicing in C. elegans. Wormbook : the Online Review of C. Elegans Biology. 1-13. PMID 18050427 DOI: 10.1895/Wormbook.1.31.1  0.517
2004 Zahler AM, Tuttle JD, Chisholm AD. Genetic suppression of intronic +1G mutations by compensatory U1 snRNA changes in Caenorhabditis elegans. Genetics. 167: 1689-96. PMID 15342508 DOI: 10.1534/Genetics.104.028746  0.383
2004 Zahler AM, Damgaard CK, Kjems J, Caputi M. SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. The Journal of Biological Chemistry. 279: 10077-84. PMID 14703516 DOI: 10.1074/Jbc.M312743200  0.523
2002 Farrer T, Roller AB, Kent WJ, Zahler AM. Analysis of the role of Caenorhabditis elegans GC-AG introns in regulated splicing. Nucleic Acids Research. 30: 3360-7. PMID 12140320 DOI: 10.1093/Nar/Gkf465  0.673
2002 Kent WJ, Sugnet CW, Furey TS, Roskin KM, Pringle TH, Zahler AM, Haussler D. The human genome browser at UCSC. Genome Research. 12: 996-1006. PMID 12045153 DOI: 10.1101/Gr.229102  0.617
2002 Caputi M, Zahler AM. SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. The Embo Journal. 21: 845-55. PMID 11847131 DOI: 10.1093/Emboj/21.4.845  0.473
2001 Caputi M, Zahler AM. Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family. The Journal of Biological Chemistry. 276: 43850-9. PMID 11571276 DOI: 10.1074/Jbc.M102861200  0.432
2000 Kent WJ, Zahler AM. Conservation, regulation, synteny, and introns in a large-scale C. briggsae-C. elegans genomic alignment. Genome Research. 10: 1115-25. PMID 10958630 DOI: 10.1101/Gr.10.8.1115  0.628
2000 Roller AB, Hoffman DC, Zahler AM. The allele-specific suppressor sup-39 alters use of cryptic splice sites in Caenorhabditis elegans. Genetics. 154: 1169-79. PMID 10757761  0.339
2000 Kent WJ, Zahler AM. The intronerator: exploring introns and alternative splicing in Caenorhabditis elegans. Nucleic Acids Research. 28: 91-3. PMID 10592190 DOI: 10.1093/Nar/28.1.91  0.71
1999 Zahler AM. Purification of SR protein splicing factors. Methods in Molecular Biology (Clifton, N.J.). 118: 419-32. PMID 10549540 DOI: 10.1385/1-59259-676-2:419  0.387
1999 Caputi M, Mayeda A, Krainer AR, Zahler AM. hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. The Embo Journal. 18: 4060-7. PMID 10406810 DOI: 10.1093/Emboj/18.14.4060  0.437
1998 Nagel RJ, Lancaster AM, Zahler AM. Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55. Rna (New York, N.Y.). 4: 11-23. PMID 9436904  0.525
1995 Zahler AM, Roth MB. Distinct functions of SR proteins in recruitment of U1 small nuclear ribonucleoprotein to alternative 5' splice sites Proceedings of the National Academy of Sciences of the United States of America. 92: 2642-2646. PMID 7708698 DOI: 10.1073/Pnas.92.7.2642  0.811
1995 Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA. A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer Molecular and Cellular Biology. 15: 4898-4907. PMID 7651409 DOI: 10.1128/Mcb.15.9.4898  0.811
1993 Zahler AM, Neugebauer KM, Lane WS, Roth MB. Distinct functions of SR proteins in alternative pre-mRNA splicing Science. 260: 219-222. PMID 8385799 DOI: 10.1126/Science.8385799  0.795
1993 Zahler AM, Neugebauer KM, Stolk JA, Roth MB. Human SR proteins and isolation of a cDNA encoding SRp75 Molecular and Cellular Biology. 13: 4023-4028. PMID 8321209 DOI: 10.1128/Mcb.13.7.4023  0.777
1992 Mayeda A, Zahler AM, Krainer AR, Roth MB. Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing. Proceedings of the National Academy of Sciences of the United States of America. 89: 1301-4. PMID 1741384 DOI: 10.1073/Pnas.89.4.1301  0.806
1992 Zahler AM, Lane WS, Stolk JA, Roth MB. SR proteins: A conserved family of pre-mRNA splicing factors Genes and Development. 6: 837-847. PMID 1577277 DOI: 10.1101/Gad.6.5.837  0.796
1991 Zahler AM, Williamson JR, Cech TR, Prescott DM. Inhibition of telomerase by G-quartet DNA structures. Nature. 350: 718-20. PMID 2023635 DOI: 10.1038/350718A0  0.595
1991 Roth MB, Zahler AM, Stolk JA. A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription Journal of Cell Biology. 115: 587-596. PMID 1717489 DOI: 10.1083/Jcb.115.3.587  0.792
1989 Zahler AM, Prescott DM. DNA primase and the replication of the telomeres in Oxytricha nova. Nucleic Acids Research. 17: 6299-317. PMID 2475856 DOI: 10.1093/Nar/17.15.6299  0.666
1988 Zahler AM, Prescott DM. Telomere terminal transferase activity in the hypotrichous ciliate Oxytricha nova and a model for replication of the ends of linear DNA molecules. Nucleic Acids Research. 16: 6953-72. PMID 3136437 DOI: 10.1093/Nar/16.14.6953  0.65
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