Dong Wang - Publications

Affiliations: 
2002-2004 Department of Chemistry Tsinghua University, Beijing, Beijing Shi, China 

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Unarta IC, Goonetilleke EC, Wang D, Huang X. Nucleotide Addition and Cleavage by RNA Polymerase II: Coordination of Two Catalytic Reactions using a Single Active Site. The Journal of Biological Chemistry. 102844. PMID 36581202 DOI: 10.1016/j.jbc.2022.102844  0.353
2022 Pei Y, Sun Y, Huang M, Zhang Z, Yan D, Cui J, Zhu D, Zeng Z, Wang D, Tang B. Ir(III) Complexes with AIE Characteristics for Biological Applications. Biosensors. 12. PMID 36551071 DOI: 10.3390/bios12121104  0.669
2021 Li B, Wang D, Lee MMS, Wang W, Tan Q, Zhao Z, Tang BZ, Huang X. Fabrics Attached with Highly Efficient Aggregation-Induced Emission Photosensitizer: Toward Self-Antiviral Personal Protective Equipment. Acs Nano. PMID 34313425 DOI: 10.1021/acsnano.1c06071  0.328
2021 Oh J, Shin J, Unarta IC, Wang W, Feldman AW, Karadeema RJ, Xu L, Xu J, Chong J, Krishnamurthy R, Huang X, Romesberg FE, Wang D. Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nature Chemical Biology. PMID 34140682 DOI: 10.1038/s41589-021-00817-3  0.355
2021 Konovalov KA, Wang W, Wang G, Goonetilleke EC, Gao X, Wang D, Huang X. A Comprehensive mechanism for 5-carboxylcytosine induced transcriptional pausing revealed by Markov state models. The Journal of Biological Chemistry. 100735. PMID 33991521 DOI: 10.1016/j.jbc.2021.100735  0.377
2021 Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, ... Wang D, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition). Autophagy. 1-382. PMID 33634751 DOI: 10.1080/15548627.2020.1797280  0.323
2019 Ma H, Yu H, Peng Q, An Z, Wang D, Shuai Z. Hydrogen Bonding Induced Morphology Dependence of Long-lived Organic Room-Temperature Phosphorescence: A Computational Study. The Journal of Physical Chemistry Letters. PMID 31652064 DOI: 10.1021/Acs.Jpclett.9B02568  0.507
2019 Ka Man Tse C, Xu J, Xu L, Sheong FK, Wang S, Chow HY, Gao X, Li X, Cheung PP, Wang D, Zhang Y, Huang X. Intrinsic Cleavage of RNA Polymerase II Adopts a Nucleobase-independent Mechanism Assisted by Transcript Phosphate. Nature Energy. 2: 228-235. PMID 31179024 DOI: 10.1038/S41929-019-0227-5  0.359
2019 Liu Y, Shi W, Zhao T, Wang D, Shuai Z. Boosting the Seebeck Coefficient for Organic Coordination Polymers: Role of Doping-Induced Polaron Band Formation. The Journal of Physical Chemistry Letters. PMID 31026169 DOI: 10.1021/Acs.Jpclett.9B00716  0.576
2019 Wang D, Lee MMS, Xu W, Shan G, Zheng X, Kwok RTK, Lam JWY, Hu X, Tang BZ. Boosting Non-Radiative Decay to Do Useful Work: Development of Multi-Modality Theranostic System from AIEgen. Angewandte Chemie (International Ed. in English). PMID 30834634 DOI: 10.1002/anie.201900366  0.464
2019 Konovalov KA, Pardo-Avila F, Tse CKM, Oh J, Wang D, Huang X. 8-oxo-guanine DNA damage induces transcription errors by escaping two distinct fidelity control checkpoints of RNA polymerase II. The Journal of Biological Chemistry. PMID 30718278 DOI: 10.1074/Jbc.Ra118.007333  0.37
2018 Sun Y, Shuai Z, Wang D. Janus monolayer of WSeTe, a new structural phase transition material driven by electrostatic gating. Nanoscale. PMID 30457143 DOI: 10.1039/C8Nr08151D  0.547
2018 Sun Y, Shuai Z, Wang D. Lattice thermal conductivity of monolayer AsP from first-principles molecular dynamics. Physical Chemistry Chemical Physics : Pccp. PMID 29745395 DOI: 10.1039/C8Cp01840E  0.57
2018 Niu Y, Li W, Peng Q, Geng H, Yi Y, Wang L, Nan G, Wang D, Shuai Z. MOlecular MAterials Property Prediction Package (MOMAP) 1.0: a software package for predicting the luminescent properties and mobility of organic functional materials Molecular Physics. 116: 1078-1090. DOI: 10.1080/00268976.2017.1402966  0.339
2017 Zhao T, Shi W, Xi J, Wang D, Shuai Z. Erratum: Intrinsic and Extrinsic Charge Transport in CH3NH3PbI3 Perovskites Predicted from First-Principles. Scientific Reports. 7: 46200. PMID 28378821 DOI: 10.1038/srep46200  0.493
2017 Zheng X, Zhu L, Zeng X, Meng L, Zhang L, Wang D, Huang X. Kinetics-Controlled Amphiphiles Self-Assembly Processes. The Journal of Physical Chemistry Letters. PMID 28365997 DOI: 10.1021/Acs.Jpclett.7B00160  0.531
2017 Sun Y, Wang D, Shuai Z. Puckered Arsenene: A Promising Room-Temperature Thermoelectric Material from First-Principles Prediction Journal of Physical Chemistry C. 121: 19080-19086. DOI: 10.1021/Acs.Jpcc.7B06196  0.336
2017 Zhao T, Sun Y, Shuai Z, Wang D. GeAs2: A IV–V Group Two-Dimensional Semiconductor with Ultralow Thermal Conductivity and High Thermoelectric Efficiency Chemistry of Materials. 29: 6261-6268. DOI: 10.1021/Acs.Chemmater.7B01343  0.32
2017 Zhao T, Wang D, Shuai Z. Doping optimization of organic-inorganic hybrid perovskite CH3NH3PbI3 for high thermoelectric efficiency Synthetic Metals. 225: 108-114. DOI: 10.1016/J.Synthmet.2017.01.003  0.311
2017 Zhu J, Sun X, Wang S, Xu Y, Wang D. Formation of nanocomplexes comprising whey proteins and fucoxanthin: Characterization, spectroscopic analysis, and molecular docking Food Hydrocolloids. 63: 391-403. DOI: 10.1016/j.foodhyd.2016.09.027  0.361
2017 Wang J, Shi W, Liu D, Zhang ZJ, Zhu Y, Wang D. Supramolecular organic nanofibers with highly efficient and stable visible light photooxidation performance Applied Catalysis B: Environmental. 202: 289-297. DOI: 10.1016/J.Apcatb.2016.09.037  0.312
2017 Chen J, Shi W, Jiang Y, Wang D, Shuai Z. Strain induced polymorphism and band structure modulation in low-temperature 2,7-dioctyl[1]benzothieno[3,2-b][1]benzothiophene single crystal Science China-Chemistry. 60: 275-283. DOI: 10.1007/S11426-016-0240-Y  0.311
2017 Nakamura Y, Zhao T, Xi J, Shi W, Wang D, Shuai Z. Intrinsic Charge Transport in Stanene: Roles of Bucklings and Electron–Phonon Couplings Advanced Electronic Materials. 3: 1700143. DOI: 10.1002/Aelm.201700143  0.329
2016 Qi G, Li N, Sun XS, Shi YC, Wang D. Effects of glycerol and nanoclay on physiochemical properties of camelina gum-based films. Carbohydrate Polymers. 152: 747-54. PMID 27516326 DOI: 10.1016/J.Carbpol.2016.07.068  0.323
2016 He W, Gao X, Pang L, Wang D, Gao N, Wang Z. First-principles investigation of vacancies in LiTaO3. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 28: 315501. PMID 27300697 DOI: 10.1088/0953-8984/28/31/315501  0.408
2016 Zhu J, Sun X, Chen X, Wang S, Wang D. Chemical cleavage of fucoxanthin from Undaria pinnatifida and formation of apo-fucoxanthinones and apo-fucoxanthinals identified using LC-DAD-APCI-MS/MS. Food Chemistry. 211: 365-73. PMID 27283644 DOI: 10.1016/j.foodchem.2016.05.064  0.325
2016 Da LT, Pardo-Avila F, Xu L, Silva DA, Zhang L, Gao X, Wang D, Huang X. Bridge helix bending promotes RNA polymerase II backtracking through a critical and conserved threonine residue. Nature Communications. 7: 11244. PMID 27091704 DOI: 10.1038/Ncomms11244  0.375
2016 Hwang CS, Xu L, Wang W, Ulrich S, Zhang L, Chong J, Shin JH, Huang X, Kool ET, McKenna CE, Wang D. Functional interplay between NTP leaving group and base pair recognition during RNA polymerase II nucleotide incorporation revealed by methylene substitution. Nucleic Acids Research. PMID 27060150 DOI: 10.1093/Nar/Gkw220  0.372
2016 Zhang L, Pardo-Avila F, Unarta IC, Cheung PP, Wang G, Wang D, Huang X. Elucidation of the Dynamics of Transcription Elongation by RNA Polymerase II using Kinetic Network Models. Accounts of Chemical Research. PMID 26991064 DOI: 10.1021/Acs.Accounts.5B00536  0.409
2016 Zhao T, Shi W, Xi J, Wang D, Shuai Z. Intrinsic and Extrinsic Charge Transport in CH3NH3PbI3 Perovskites Predicted from First-Principles. Scientific Reports. 7: 19968. PMID 26822239 DOI: 10.1038/Srep19968  0.572
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... Wang D, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356  0.346
2016 Ma Z, Geng H, Wang D, Shuai Z. Influence of alkyl side-chain length on the carrier mobility in organic semiconductors: herringbone vs. pi–pi stacking Journal of Materials Chemistry C. 4: 4546-4555. DOI: 10.1039/C6Tc00755D  0.323
2016 Yang Q, Wang D, Zhang M, Gao T, Xue H, Wang Z, Xiong Z. Lead-free (Na0.83K0.17)0.5Bi0.5TiO3 nanofibers for wearable piezoelectric nanogenerators Journal of Alloys and Compounds. 688: 1066-1071. DOI: 10.1016/j.jallcom.2016.07.131  0.368
2015 Zhou G, Wang D. High thermoelectric performance from optimization of hole-doped CuInTe2. Physical Chemistry Chemical Physics : Pccp. PMID 26593866 DOI: 10.1039/C5Cp05129K  0.342
2015 Shi W, Zhao T, Xi J, Wang D, Shuai Z. Unravelling Doping Effects on PEDOT at the Molecular Level: From Geometry to Thermoelectric Transport Properties. Journal of the American Chemical Society. PMID 26406937 DOI: 10.1021/Jacs.5B06584  0.578
2015 Zhang L, Silva DA, Pardo-Avila F, Wang D, Huang X. Structural Model of RNA Polymerase II Elongation Complex with Complete Transcription Bubble Reveals NTP Entry Routes. Plos Computational Biology. 11: e1004354. PMID 26134169 DOI: 10.1371/Journal.Pcbi.1004354  0.363
2015 Xu L, Wang W, Zhang L, Chong J, Huang X, Wang D. Impact of template backbone heterogeneity on RNA polymerase II transcription. Nucleic Acids Research. 43: 2232-41. PMID 25662224 DOI: 10.1093/Nar/Gkv059  0.352
2015 Xi J, Wang D, Shuai Z. Electronic properties and charge carrier mobilities of graphynes and graphdiynes from first principles Wiley Interdisciplinary Reviews: Computational Molecular Science. 5: 215-227. DOI: 10.1002/Wcms.1213  0.345
2014 Xi J, Zhao T, Wang D, Shuai Z. Tunable Electronic Properties of Two-Dimensional Transition Metal Dichalcogenide Alloys: A First-Principles Prediction Journal of Physical Chemistry Letters. 5: 285-291. PMID 26270701 DOI: 10.1021/Jz402375S  0.548
2014 Xu L, Zhang L, Chong J, Xu J, Huang X, Wang D. Strand-specific (asymmetric) contribution of phosphodiester linkages on RNA polymerase II transcriptional efficiency and fidelity. Proceedings of the National Academy of Sciences of the United States of America. 111: E3269-76. PMID 25074911 DOI: 10.1073/Pnas.1406234111  0.355
2014 Xi J, Wang D, Yi Y, Shuai Z. Electron-phonon couplings and carrier mobility in graphynes sheet calculated using the Wannier-interpolation approach. The Journal of Chemical Physics. 141: 034704. PMID 25053331 DOI: 10.1063/1.4887538  0.575
2014 Zhang T, Jiang Y, Niu Y, Wang D, Peng Q, Shuai Z. Aggregation effects on the optical emission of 1,1,2,3,4,5-hexaphenylsilole (HPS): a QM/MM study. The Journal of Physical Chemistry. A. 118: 9094-104. PMID 24921662 DOI: 10.1021/Jp5021017  0.563
2014 Silva DA, Weiss DR, Pardo Avila F, Da LT, Levitt M, Wang D, Huang X. Millisecond dynamics of RNA polymerase II translocation at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 7665-70. PMID 24753580 DOI: 10.1073/Pnas.1315751111  0.372
2014 Feng S, Zheng X, Wang D, Gong Y, Wang Q, Deng H. Systematic analysis of reactivities and fragmentation of glutathione and its isomer GluCysGly. The Journal of Physical Chemistry. A. 118: 8222-8. PMID 24734962 DOI: 10.1021/Jp501015K  0.481
2014 Shuai Z, Wang D, Peng Q, Geng H. Computational evaluation of optoelectronic properties for organic/carbon materials. Accounts of Chemical Research. 47: 3301-9. PMID 24702037 DOI: 10.1021/Ar400306K  0.579
2014 Wu Q, Zhang T, Peng Q, Wang D, Shuai Z. Aggregation induced blue-shifted emission--the molecular picture from a QM/MM study. Physical Chemistry Chemical Physics : Pccp. 16: 5545-52. PMID 24509542 DOI: 10.1039/C3Cp54910K  0.566
2014 Gao X, Geng H, Peng Q, Ren J, Yi Y, Wang D, Shuai Z. Nonadiabatic Molecular Dynamics Modeling of the Intrachain Charge Transport in Conjugated Diketopyrrolo-pyrrole Polymers Journal of Physical Chemistry C. 118: 6631-6640. DOI: 10.1021/Jp412782N  0.474
2014 Shi W, Chen J, Xi J, Wang D, Shuai Z. Search for Organic Thermoelectric Materials with High Mobility: The Case of 2,7-Dialkyl[1]benzothieno[3,2-b][1]benzothiophene Derivatives Chemistry of Materials. 26: 2669-2677. DOI: 10.1021/Cm500429W  0.33
2014 Zheng X, Geng H, Yi Y, Li Q, Jiang Y, Wang D, Shuai Z. Understanding Lattice Strain-Controlled Charge Transport in Organic Semiconductors: A Computational Study Advanced Functional Materials. 24: 5531-5540. DOI: 10.1002/Adfm.201400261  0.313
2013 Chen J, Xi J, Wang D, Shuai Z. Carrier Mobility in Graphyne Should Be Even Larger than That in Graphene: A Theoretical Prediction. Journal of Physical Chemistry Letters. 4: 1443-1448. PMID 26282296 DOI: 10.1021/Jz4005587  0.544
2013 Liu K, Zheng X, Samuel AZ, Ramkumar SG, Ghosh S, Tan X, Wang D, Shuai Z, Ramakrishnan S, Liu D, Zhang X. Stretching single polymer chains of donor-acceptor foldamers: toward the quantitative study on the extent of folding. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 14438-43. PMID 24168699 DOI: 10.1021/La403709U  0.643
2013 Chen Y, Xi J, Dumcenco DO, Liu Z, Suenaga K, Wang D, Shuai Z, Huang YS, Xie L. Tunable band gap photoluminescence from atomically thin transition-metal dichalcogenide alloys. Acs Nano. 7: 4610-6. PMID 23600688 DOI: 10.1021/Nn401420H  0.54
2013 Da LT, Pardo Avila F, Wang D, Huang X. A two-state model for the dynamics of the pyrophosphate ion release in bacterial RNA polymerase. Plos Computational Biology. 9: e1003020. PMID 23592966 DOI: 10.1371/Journal.Pcbi.1003020  0.364
2013 Zheng X, Shuai Z, Wang D. Anion-binding properties of π-electron deficient cavities in bis(tetraoxacalix[2]arene[2]triazine): a theoretical study. The Journal of Physical Chemistry. A. 117: 3844-51. PMID 23577704 DOI: 10.1021/Jp3113478  0.646
2013 Zheng X, Wang D, Shuai Z. Coarse-grained molecular dynamics simulations of photoswitchable assembly and disassembly. Nanoscale. 5: 3681-9. PMID 23487154 DOI: 10.1039/C3Nr33619K  0.637
2013 Zhang J, Ma Z, Zhang Q, Virk TS, Geng H, Wang D, Xu W, Shuai Z, Singh K, Hu W, Zhu D. Substitution effects on the electrical tranporting properties of tetrathia[22]annulene[2,1,2,1]: Experimental and theoretical investigations Journal of Materials Chemistry C. 1: 5765-5771. DOI: 10.1039/C3Tc30776J  0.329
2012 Chen J, Wang D, Shuai Z. First-Principles Predictions of Thermoelectric Figure of Merit for Organic Materials: Deformation Potential Approximation Journal of Chemical Theory and Computation. 8: 3338-3347. PMID 26605740 DOI: 10.1021/Ct3004436  0.582
2012 Wang D, Shi W, Chen J, Xi J, Shuai Z. Modeling thermoelectric transport in organic materials. Physical Chemistry Chemical Physics. 14: 16505-16520. PMID 23086525 DOI: 10.1039/C2Cp42710A  0.565
2012 Xi J, Long M, Tang L, Wang D, Shuai Z. First-principles prediction of charge mobility in carbon and organic nanomaterials. Nanoscale. 4: 4348-69. PMID 22695470 DOI: 10.1039/C2Nr30585B  0.578
2012 Gao X, Peng Q, Niu Y, Wang D, Shuai Z. Theoretical insight into the aggregation induced emission phenomena of diphenyldibenzofulvene: a nonadiabatic molecular dynamics study. Physical Chemistry Chemical Physics : Pccp. 14: 14207-16. PMID 22491526 DOI: 10.1039/C2Cp40347A  0.616
2012 Da LT, Wang D, Huang X. Dynamics of pyrophosphate ion release and its coupled trigger loop motion from closed to open state in RNA polymerase II. Journal of the American Chemical Society. 134: 2399-406. PMID 22206270 DOI: 10.1021/Ja210656K  0.365
2012 Zheng X, Wang D, Shuai Z, Zhang X. Molecular dynamics simulations of the supramolecular assembly between an azobenzene-containing surfactant and α-cyclodextrin: role of photoisomerization. The Journal of Physical Chemistry. B. 116: 823-32. PMID 22136486 DOI: 10.1021/Jp2073107  0.625
2011 Chen Q, Meng L, Li Q, Wang D, Guo W, Shuai Z, Jiang L. Water transport and purification in nanochannels controlled by asymmetric wettability. Small. 7: 2225-2231. PMID 21608126 DOI: 10.1002/Smll.201100287  0.53
2011 Meng L, Wang D, Li Q, Yi Y, Brédas JL, Shuai Z. An improved dynamic Monte Carlo model coupled with Poisson equation to simulate the performance of organic photovoltaic devices. The Journal of Chemical Physics. 134: 124102. PMID 21456640 DOI: 10.1063/1.3569130  0.565
2011 Long M, Tang L, Wang D, Li Y, Shuai Z. Electronic structure and carrier mobility in graphdiyne sheet and nanoribbons: theoretical predictions. Acs Nano. 5: 2593-600. PMID 21443198 DOI: 10.1021/Nn102472S  0.576
2011 Wang D, Tang L, Long M, Shuai Z. Anisotropic thermal transport in organic molecular crystals from nonequilibrium molecular dynamics simulations Journal of Physical Chemistry C. 115: 5940-5946. DOI: 10.1021/Jp108739C  0.301
2010 Huang X, Wang D, Weiss DR, Bushnell DA, Kornberg RD, Levitt M. RNA polymerase II trigger loop residues stabilize and position the incoming nucleotide triphosphate in transcription. Proceedings of the National Academy of Sciences of the United States of America. 107: 15745-50. PMID 20798057 DOI: 10.1073/Pnas.1009898107  0.382
2010 Wang D, Zhu G, Huang X, Lippard SJ. X-ray structure and mechanism of RNA polymerase II stalled at an antineoplastic monofunctional platinum-DNA adduct. Proceedings of the National Academy of Sciences of the United States of America. 107: 9584-9. PMID 20448203 DOI: 10.1073/Pnas.1002565107  0.354
2010 Wang D, Chen L, Zheng R, Wang L, Shi Q. Communications: A nonperturbative quantum master equation approach to charge carrier transport in organic molecular crystals. The Journal of Chemical Physics. 132: 081101. PMID 20192281 DOI: 10.1063/1.3328107  0.463
2010 Wang D, Tang L, Long M, Shuai Z. First-principles investigation of organic semiconductors for thermoelectric applications. The Journal of Chemical Physics. 131: 224704. PMID 20001073 DOI: 10.1063/1.3270161  0.54
2010 Long MQ, Tang L, Wang D, Wang L, Shuai Z. Theoretical predictions of size-dependent carrier mobility and polarity in graphene. Journal of the American Chemical Society. 131: 17728-9. PMID 19924857 DOI: 10.1021/ja907528a  0.503
2009 Wang D, Voth GA. Proton transport pathway in the ClC Cl-/H+ antiporter. Biophysical Journal. 97: 121-31. PMID 19580750 DOI: 10.1016/J.Bpj.2009.04.038  0.376
2009 Wang D, Bushnell DA, Huang X, Westover KD, Levitt M, Kornberg RD. Structural basis of transcription: backtracked RNA polymerase II at 3.4 angstrom resolution. Science (New York, N.Y.). 324: 1203-6. PMID 19478184 DOI: 10.1126/Science.1168729  0.344
2009 Wang D, Tang L, Long M, Shuai Z. First-principles investigation of organic semiconductors for thermoelectric applications Journal of Chemical Physics. 131. DOI: 10.1063/1.3270161  0.346
2009 Tang L, Long M, Wang D, Shuai Z. The role of acoustic phonon scattering in charge transport in organic semiconductors: A first-principles deformation-potential study Science in China, Series B: Chemistry. 52: 1646-1652. DOI: 10.1007/S11426-009-0244-3  0.321
2005 Wang D, Geva E. Protein structure and dynamics from single-molecule fluorescence resonance energy transfer. The Journal of Physical Chemistry. B. 109: 1626-34. PMID 16851134 DOI: 10.1021/Jp0478864  0.534
2000 Wang D, Shi Q, Zhu Q. An ab initio quartic force field of PH3 The Journal of Chemical Physics. 112: 9624-9631. DOI: 10.1063/1.481579  0.418
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