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Zhaoshi Jiang, Ph.D. - Publications

Affiliations: 
Genome Sciences University of Washington, Seattle, Seattle, WA 
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31 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Podlaha O, Wu G, Downie B, Ramamurthy R, Gaggar A, Subramanian M, Ye Z, Jiang Z. Genomic modeling of hepatitis B virus integration frequency in the human genome. Plos One. 14: e0220376. PMID 31356634 DOI: 10.1371/Journal.Pone.0220376  0.347
2019 Podlaha O, Gane E, Brunetto M, Fung S, Chuang WL, Pan CQ, Jiang Z, Liu Y, Bhardwaj N, Mukherjee P, Flaherty J, Gaggar A, Subramanian M, Izumi N, Shalimar, et al. Large-scale viral genome analysis identifies novel clinical associations between hepatitis B virus and chronically infected patients. Scientific Reports. 9: 10529. PMID 31324819 DOI: 10.1038/S41598-019-46609-7  0.345
2019 Podlaha O, Wu G, Downie B, Ramamurthy RR, Gaggar A, Subramanian M, Ye Z, Jiang Z. SAT-191-Host genome integration of hepatitis B is prolific and is the primary contributor to viral HBs antigen gene expression Journal of Hepatology. 70: e714. DOI: 10.1016/S0618-8278(19)31426-4  0.343
2019 Shea PR, Kleinstein S, Stong N, Gane E, Agarwal K, Jiang Z, Flaherty JF, Suri V, Gaggar A, Subramanian M, Buti M, Chuang W, Fung S, Goldstein D. THU-233-Whole exome sequencing analysis of the role of rare human variation in chronic hepatitis B infection Journal of Hepatology. 70: e267-e268. DOI: 10.1016/S0618-8278(19)30506-7  0.324
2018 Podlaha O, Agarwal K, Thompson A, Foster G, Samuel D, Yatsuhashi H, Gaggar A, Kitrinos K, Jiang Z, Tong M, Gane E, Brunetto M. Whole genome viral sequencing reveals subgenotype specific dynamics of antiviral treatment response in HBeAg positive and treatment naive chronic hepatitis B patients Journal of Hepatology. 68: S778-S779. DOI: 10.1016/S0168-8278(18)31824-5  0.344
2017 Podlaha O, Revill P, Bhardwaj N, Zhuo L, Kitrinos K, Gaggar A, Jiang Z, Marcellin P, Locarnini S, Chan HL. Whole-genome deep sequencing of hepatitis B virus in chronic hepatitis B patients reveals single nucleotide variants associated with baseline HBV DNA levels and HBeAg status Journal of Hepatology. 66. DOI: 10.1016/S0168-8278(17)31829-9  0.33
2016 Li X, Lei X, Zhang C, Jiang Z, Shi Y, Wang S, Wang L, Hong B. Complete genome sequence of Streptomyces globisporus C-1027, the producer of an enediyne antibiotic lidamycin. Journal of Biotechnology. PMID 26853480 DOI: 10.1016/j.jbiotec.2016.02.004  0.318
2015 Klijn C, Durinck S, Stawiski EW, Haverty PM, Jiang Z, Liu H, Degenhardt J, Mayba O, Gnad F, Liu J, Pau G, Reeder J, Cao Y, Mukhyala K, Selvaraj SK, et al. A comprehensive transcriptional portrait of human cancer cell lines. Nature Biotechnology. 33: 306-12. PMID 25485619 DOI: 10.1038/Nbt.3080  0.382
2015 Kleinstein S, Urban T, Long N, Thompson A, Gane E, Zeuzem S, Jiang Z, Ge D, Paulson M, Hyland R, Brainard D, Gaggar A, Mani Subramanian G, McHutchison J, Muir A, et al. P0711 : Genome-wide association study of response to sofosbuvir-ribavirin treatment in GT2/3 HCV patients Journal of Hepatology. 62: S590. DOI: 10.1016/S0168-8278(15)30914-4  0.302
2014 Mayba O, Gilbert HN, Liu J, Haverty PM, Jhunjhunwala S, Jiang Z, Watanabe C, Zhang Z. MBASED: allele-specific expression detection in cancer tissues and cell lines. Genome Biology. 15: 405. PMID 25315065 DOI: 10.1186/S13059-014-0405-3  0.313
2014 Jhunjhunwala S, Jiang Z, Stawiski EW, Gnad F, Liu J, Mayba O, Du P, Diao J, Johnson S, Wong KF, Gao Z, Li Y, Wu TD, Kapadia SB, Modrusan Z, et al. Diverse modes of genomic alteration in hepatocellular carcinoma. Genome Biology. 15: 436. PMID 25159915 DOI: 10.1186/S13059-014-0436-9  0.346
2012 Liu J, Lee W, Jiang Z, Chen Z, Jhunjhunwala S, Haverty PM, Gnad F, Guan Y, Gilbert HN, Stinson J, Klijn C, Guillory J, Bhatt D, Vartanian S, Walter K, et al. Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events. Genome Research. 22: 2315-27. PMID 23033341 DOI: 10.1101/Gr.140988.112  0.32
2012 Jiang Z, Jhunjhunwala S, Liu J, Haverty PM, Kennemer MI, Guan Y, Lee W, Carnevali P, Stinson J, Johnson S, Diao J, Yeung S, Jubb A, Ye W, Wu TD, et al. The effects of hepatitis B virus integration into the genomes of hepatocellular carcinoma patients. Genome Research. 22: 593-601. PMID 22267523 DOI: 10.1101/Gr.133926.111  0.346
2011 Lai A, Kharbanda S, Pope WB, Tran A, Solis OE, Peale F, Forrest WF, Pujara K, Carrillo JA, Pandita A, Ellingson BM, Bowers CW, Soriano RH, Schmidt NO, Mohan S, ... ... Jiang Z, et al. Evidence for sequenced molecular evolution of IDH1 mutant glioblastoma from a distinct cell of origin. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 29: 4482-90. PMID 22025148 DOI: 10.1200/Jco.2010.33.8715  0.327
2010 Lee W, Jiang Z, Liu J, Haverty PM, Guan Y, Stinson J, Yue P, Zhang Y, Pant KP, Bhatt D, Ha C, Johnson S, Kennemer MI, Mohan S, Nazarenko I, et al. The mutation spectrum revealed by paired genome sequences from a lung cancer patient. Nature. 465: 473-7. PMID 20505728 DOI: 10.1038/Nature09004  0.37
2009 Antonacci F, Kidd JM, Marques-Bonet T, Ventura M, Siswara P, Jiang Z, Eichler EE. Characterization of six human disease-associated inversion polymorphisms. Human Molecular Genetics. 18: 2555-66. PMID 19383631 DOI: 10.1093/Hmg/Ddp187  0.764
2009 Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Alkan C, Aksay G, Girirajan S, Siswara P, Chen L, et al. A burst of segmental duplications in the genome of the African great ape ancestor. Nature. 457: 877-81. PMID 19212409 DOI: 10.1038/Nature07744  0.769
2009 Degenhardt JD, de Candia P, Chabot A, Schwartz S, Henderson L, Ling B, Hunter M, Jiang Z, Palermo RE, Katze M, Eichler EE, Ventura M, Rogers J, Marx P, Gilad Y, et al. Copy number variation of CCL3-like genes affects rate of progression to simian-AIDS in Rhesus Macaques (Macaca mulatta). Plos Genetics. 5: e1000346. PMID 19165326 DOI: 10.1371/Journal.Pgen.1000346  0.495
2009 Marques-Bonet T, Kidd JM, Ventura M, Graves TA, Cheng Z, Hillier LW, Jiang Z, Baker C, Malfavon-Borja R, Fulton LA, Nazareth LV, Muzny DM, Alkan C, Aksay G, Girirajan S, et al. A burst of segmental duplications in the genome of the African great ape ancestor Nature. 458: 238. DOI: 10.1038/nature07881  0.756
2008 Zody MC, Jiang Z, Fung HC, Antonacci F, Hillier LW, Cardone MF, Graves TA, Kidd JM, Cheng Z, Abouelleil A, Chen L, Wallis J, Glasscock J, Wilson RK, Reily AD, et al. Evolutionary toggling of the MAPT 17q21.31 inversion region. Nature Genetics. 40: 1076-83. PMID 19165922 DOI: 10.1038/Ng.193  0.757
2008 Lomiento M, Jiang Z, D'Addabbo P, Eichler EE, Rocchi M. Evolutionary-new centromeres preferentially emerge within gene deserts. Genome Biology. 9: R173. PMID 19087244 DOI: 10.1186/Gb-2008-9-12-R173  0.558
2008 Mefford HC, Sharp AJ, Baker C, Itsara A, Jiang Z, Buysse K, Huang S, Maloney VK, Crolla JA, Baralle D, Collins A, Mercer C, Norga K, de Ravel T, Devriendt K, et al. Recurrent rearrangements of chromosome 1q21.1 and variable pediatric phenotypes. The New England Journal of Medicine. 359: 1685-99. PMID 18784092 DOI: 10.1056/Nejmoa0805384  0.719
2008 Jiang Z, Hubley R, Smit A, Eichler EE. DupMasker: a tool for annotating primate segmental duplications. Genome Research. 18: 1362-8. PMID 18502942 DOI: 10.1101/Gr.078477.108  0.598
2008 Kirsch S, Münch C, Jiang Z, Cheng Z, Chen L, Batz C, Eichler EE, Schempp W. Evolutionary dynamics of segmental duplications from human Y-chromosomal euchromatin/heterochromatin transition regions. Genome Research. 18: 1030-42. PMID 18445620 DOI: 10.1101/Gr.076711.108  0.614
2008 Sharp AJ, Mefford HC, Li K, Baker C, Skinner C, Stevenson RE, Schroer RJ, Novara F, De Gregori M, Ciccone R, Broomer A, Casuga I, Wang Y, Xiao C, Barbacioru C, ... ... Jiang Z, et al. A recurrent 15q13.3 microdeletion syndrome associated with mental retardation and seizures. Nature Genetics. 40: 322-8. PMID 18278044 DOI: 10.1038/Ng.93  0.711
2008 Cardone MF, Jiang Z, D'Addabbo P, Archidiacono N, Rocchi M, Eichler EE, Ventura M. Hominoid chromosomal rearrangements on 17q map to complex regions of segmental duplication. Genome Biology. 9: R28. PMID 18257913 DOI: 10.1186/Gb-2008-9-2-R28  0.601
2007 Jiang Z, Tang H, Ventura M, Cardone MF, Marques-Bonet T, She X, Pevzner PA, Eichler EE. Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution. Nature Genetics. 39: 1361-8. PMID 17922013 DOI: 10.1038/Ng.2007.9  0.759
2005 Yohn CT, Jiang Z, McGrath SD, Hayden KE, Khaitovich P, Johnson ME, Eichler MY, McPherson JD, Zhao S, Pääbo S, Eichler EE. Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans. Plos Biology. 3: e110. PMID 15737067 DOI: 10.1371/Journal.Pbio.0030110  0.732
2005 Locke DP, Jiang Z, Pertz LM, Misceo D, Archidiacono N, Eichler EE. Molecular evolution of the human chromosome 15 pericentromeric region. Cytogenetic and Genome Research. 108: 73-82. PMID 15545718 DOI: 10.1159/000080804  0.753
2004 She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE. Shotgun sequence assembly and recent segmental duplications within the human genome. Nature. 431: 927-30. PMID 15496912 DOI: 10.1038/Nature03062  0.723
2004 She X, Horvath JE, Jiang Z, Liu G, Furey TS, Christ L, Clark R, Graves T, Gulden CL, Alkan C, Bailey JA, Sahinalp C, Rocchi M, Haussler D, Wilson RK, et al. The structure and evolution of centromeric transition regions within the human genome. Nature. 430: 857-64. PMID 15318213 DOI: 10.1038/Nature02806  0.769
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