☰

Jeffrey A Pleiss - Publications

Affiliations: 
Cornell University, Ithaca, NY, United States 
Area:
pre-mRNA splicing
Tree Info Similar researchers PubMed Report error

35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dwyer ZW, Pleiss JA. The problem of selection bias in studies of pre-mRNA splicing. Nature Communications. 14: 1966. PMID 37031238 DOI: 10.1038/s41467-023-37650-2  0.697
2022 Gildea MA, Dwyer ZW, Pleiss JA. Transcript-specific determinants of pre-mRNA splicing revealed through in vivo kinetic analyses of the 1 and 2 chemical steps. Molecular Cell. PMID 35830855 DOI: 10.1016/j.molcel.2022.06.020  0.748
2020 Williams JA, Dwyer Z, Fair B, Larson A, Pleiss JA, Inada M. The Search for Novel Splicing Factors: Mapping Mutations in a Temperature‐Sensitive Schizosaccharomyces pombe Library The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.04400  0.695
2019 Gildea MA, Dwyer ZW, Pleiss JA. Multiplexed Primer Extension sequencing: a targeted RNA-seq method that enables high-precision quantitation of mRNA splicing isoforms and rare pre-mRNA splicing intermediates. Methods (San Diego, Calif.). PMID 31121301 DOI: 10.1016/J.Ymeth.2019.05.013  0.777
2019 Xu H, Fair BJ, Dwyer ZW, Gildea M, Pleiss JA. Detection of splice isoforms and rare intermediates using multiplexed primer extension sequencing. Nature Methods. 16: 55-58. PMID 30573814 DOI: 10.1038/S41592-018-0258-X  0.757
2017 Thakran P, Pandit PA, Datta S, Kolathur KK, Pleiss JA, Mishra SK. Sde2 is an intron-specific pre-mRNA splicing regulator activated by ubiquitin-like processing. The Embo Journal. PMID 28947618 DOI: 10.15252/Embj.201796751  0.79
2017 Yeh CS, Chang SL, Chen JH, Wang HK, Chou YC, Wang CH, Huang SH, Larson A, Pleiss JA, Chang WH, Chang TH. The conserved AU dinucleotide at the 5' end of nascent U1 snRNA is optimized for the interaction with nuclear cap-binding-complex. Nucleic Acids Research. 45: 9679-9693. PMID 28934473 DOI: 10.1093/Nar/Gkx608  0.747
2017 Mayerle M, Raghavan M, Ledoux S, Price A, Stepankiw N, Hadjivassiliou H, Moehle EA, Mendoza SD, Pleiss JA, Guthrie C, Abelson J. Structural toggle in the RNaseH domain of Prp8 helps balance splicing fidelity and catalytic efficiency. Proceedings of the National Academy of Sciences of the United States of America. PMID 28416677 DOI: 10.1073/Pnas.1701462114  0.754
2016 Fair BJ, Pleiss JA. The power of fission: yeast as a tool for understanding complex splicing. Current Genetics. PMID 27628706 DOI: 10.1007/S00294-016-0647-6  0.767
2016 Inada M, Nichols RJ, Parsa JY, Homer CM, Benn RA, Hoxie RS, Madhani HD, Shuman S, Schwer B, Pleiss JA. Phospho-site mutants of the RNA Polymerase II C-terminal domain alter subtelomeric gene expression and chromatin modification state in fission yeast. Nucleic Acids Research. PMID 27402158 DOI: 10.1093/Nar/Gkw603  0.812
2016 Larson A, Fair BJ, Pleiss JA. Interconnections Between RNA-Processing Pathways Revealed by a Sequencing Based Genetic Screen for Pre-mRNA Splicing Mutants in Fission Yeast. G3 (Bethesda, Md.). PMID 27172183 DOI: 10.1534/G3.116.027508  0.785
2016 Alfonso-Parra C, Ahmed-Braimah YH, Degner EC, Avila FW, Villarreal SM, Pleiss JA, Wolfner MF, Harrington LC. Mating-Induced Transcriptome Changes in the Reproductive Tract of Female Aedes aegypti. Plos Neglected Tropical Diseases. 10: e0004451. PMID 26901677 DOI: 10.1371/Journal.Pntd.0004451  0.715
2016 Vo TV, Das J, Meyer MJ, Cordero NA, Akturk N, Wei X, Fair BJ, Degatano AG, Fragoza R, Liu LG, Matsuyama A, Trickey M, Horibata S, Grimson A, Yamano H, ... ... Pleiss JA, et al. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Cell. 164: 310-323. PMID 26771498 DOI: 10.1016/J.Cell.2015.11.037  0.721
2015 Henne WM, Zhu L, Balogi Z, Stefan C, Pleiss JA, Emr SD. Mdm1/Snx13 is a novel ER-endolysosomal interorganelle tethering protein. The Journal of Cell Biology. 210: 541-51. PMID 26283797 DOI: 10.1083/Jcb.201503088  0.705
2015 Stepankiw N, Raghavan M, Fogarty EA, Grimson A, Pleiss JA. Widespread alternative and aberrant splicing revealed by lariat sequencing. Nucleic Acids Research. 43: 8488-501. PMID 26261211 DOI: 10.1093/Nar/Gkv763  0.763
2013 Cui J, Sartain CV, Pleiss JA, Wolfner MF. Cytoplasmic polyadenylation is a major mRNA regulator during oogenesis and egg activation in Drosophila. Developmental Biology. 383: 121-31. PMID 23978535 DOI: 10.1016/J.Ydbio.2013.08.013  0.744
2013 Awan AR, Manfredo A, Pleiss JA. Lariat sequencing in a unicellular yeast identifies regulated alternative splicing of exons that are evolutionarily conserved with humans. Proceedings of the National Academy of Sciences of the United States of America. 110: 12762-7. PMID 23861491 DOI: 10.1073/Pnas.1218353110  0.751
2013 Das J, Vo TV, Wei X, Mellor JC, Tong V, Degatano AG, Wang X, Wang L, Cordero NA, Kruer-Zerhusen N, Matsuyama A, Pleiss JA, Lipkin SM, Yoshida M, Roth FP, et al. Cross-species protein interactome mapping reveals species-specific wiring of stress response pathways. Science Signaling. 6: ra38. PMID 23695164 DOI: 10.1126/Scisignal.2003350  0.697
2012 Weiner A, Chen HV, Liu CL, Rahat A, Klien A, Soares L, Gudipati M, Pfeffner J, Regev A, Buratowski S, Pleiss JA, Friedman N, Rando OJ. Systematic dissection of roles for chromatin regulators in a yeast stress response. Plos Biology. 10: e1001369. PMID 22912562 DOI: 10.1371/Journal.Pbio.1001369  0.737
2012 Albulescu LO, Sabet N, Gudipati M, Stepankiw N, Bergman ZJ, Huffaker TC, Pleiss JA. A quantitative, high-throughput reverse genetic screen reveals novel connections between Pre-mRNA splicing and 5' and 3' end transcript determinants. Plos Genetics. 8: e1002530. PMID 22479188 DOI: 10.1371/Journal.Pgen.1002530  0.786
2010 Inada M, Pleiss JA. Genome-wide approaches to monitor pre-mRNA splicing. Methods in Enzymology. 470: 51-75. PMID 20946806 DOI: 10.1016/S0076-6879(10)70003-3  0.787
2010 Abelson J, Blanco M, Ditzler MA, Fuller F, Aravamudhan P, Wood M, Villa T, Ryan DE, Pleiss JA, Maeder C, Guthrie C, Walter NG. Conformational dynamics of single pre-mRNA molecules during in vitro splicing. Nature Structural & Molecular Biology. 17: 504-12. PMID 20305654 DOI: 10.1038/Nsmb.1767  0.817
2010 Sahi C, Lee T, Inada M, Pleiss JA, Craig EA. Cwc23, an essential J protein critical for pre-mRNA splicing with a dispensable J domain. Molecular and Cellular Biology. 30: 33-42. PMID 19822657 DOI: 10.1128/Mcb.00842-09  0.789
2009 Zhang L, Xu T, Maeder C, Bud LO, Shanks J, Nix J, Guthrie C, Pleiss JA, Zhao R. Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2 Nature Structural and Molecular Biology. 16: 731-739. PMID 19525970 DOI: 10.1038/Nsmb.1625  0.776
2008 Coughlin DJ, Pleiss JA, Walker SC, Whitworth GB, Engelke DR. Genome-wide search for yeast RNase P substrates reveals role in maturation of intron-encoded box C/D small nucleolar RNAs. Proceedings of the National Academy of Sciences of the United States of America. 105: 12218-23. PMID 18713869 DOI: 10.1073/Pnas.0801906105  0.787
2007 Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C. Rapid, transcript-specific changes in splicing in response to environmental stress. Molecular Cell. 27: 928-37. PMID 17889666 DOI: 10.1016/J.Molcel.2007.07.018  0.773
2007 Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C. Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components. Plos Biology. 5: e90. PMID 17388687 DOI: 10.1371/Journal.Pbio.0050090  0.797
2006 Stark MR, Pleiss JA, Deras M, Scaringe SA, Rader SD. An RNA ligase-mediated method for the efficient creation of large, synthetic RNAs. Rna (New York, N.Y.). 12: 2014-9. PMID 16983143 DOI: 10.1261/Rna.93506  0.745
2002 Villa T, Pleiss JA, Guthrie C. Spliceosomal snRNAs: Mg(2+)-dependent chemistry at the catalytic core? Cell. 109: 149-52. PMID 12007401 DOI: 10.1016/S0092-8674(02)00726-2  0.765
2001 Wolfson AD, LaRiviere FJ, Pleiss JA, Dale T, Asahara H, Uhlenbeck OC. tRNA conformity. Cold Spring Harbor Symposia On Quantitative Biology. 66: 185-93. PMID 12762021  0.726
2001 Pleiss JA, Uhlenbeck OC. Identification of thermodynamically relevant interactions between EF-Tu and backbone elements of tRNA. Journal of Molecular Biology. 308: 895-905. PMID 11352580 DOI: 10.1006/Jmbi.2001.4612  0.75
2000 Pleiss JA, Wolfson AD, Uhlenbeck OC. Mapping contacts between Escherichia coli alanyl tRNA synthetase and 2' hydroxyls using a complete tRNA molecule. Biochemistry. 39: 8250-8. PMID 10889033 DOI: 10.1021/Bi0001022  0.765
2000 Piepenburg O, Pape T, Pleiss JA, Wintermeyer W, Uhlenbeck OC, Rodnina MV. Intact aminoacyl-tRNA is required to trigger GTP hydrolysis by elongation factor Tu on the ribosome. Biochemistry. 39: 1734-8. PMID 10677222 DOI: 10.1021/Bi992331Y  0.785
1998 Pleiss JA, Derrick ML, Uhlenbeck OC. T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates. Rna (New York, N.Y.). 4: 1313-7. PMID 9769105 DOI: 10.1017/S135583829800106X  0.794
1998 Wolfson AD, Pleiss JA, Uhlenbeck OC. A new assay for tRNA aminoacylation kinetics. Rna (New York, N.Y.). 4: 1019-23. PMID 9701292 DOI: 10.1017/S1355838298980700  0.735
Show low-probability matches.