Edward S. Boyden - Publications

Affiliations: 
Massachusetts Institute of Technology, Cambridge, MA, United States 
Area:
neuroengineering, systematic neuroscience, disease
Website:
http://edboyden.org

184 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Shin TW, Wang H, Zhang C, An B, Lu Y, Zhang E, Lu X, Karagiannis ED, Kang JS, Emenari A, Symvoulidis P, Asano S, Lin L, Costa EK, Marblestone AH, ... ... Boyden ES, et al. Dense, Continuous Membrane Labeling and Expansion Microscopy Visualization of Ultrastructure in Tissues. Biorxiv : the Preprint Server For Biology. PMID 38496681 DOI: 10.1101/2024.03.07.583776  0.775
2024 Page Vizcaíno J, Symvoulidis P, Wang Z, Jelten J, Favaro P, Boyden ES, Lasser T. Fast light-field 3D microscopy with out-of-distribution detection and adaptation through conditional normalizing flows. Biomedical Optics Express. 15: 1219-1232. PMID 38404325 DOI: 10.1364/BOE.504039  0.715
2024 Valdes PA, Yu CJ, Aronson J, Ghosh D, Zhao Y, An B, Bernstock JD, Bhere D, Felicella MM, Viapiano MS, Shah K, Chiocca EA, Boyden ES. Improved immunostaining of nanostructures and cells in human brain specimens through expansion-mediated protein decrowding. Science Translational Medicine. 16: eabo0049. PMID 38295184 DOI: 10.1126/scitranslmed.abo0049  0.415
2023 Wang Z, Zhang J, Symvoulidis P, Guo W, Zhang L, Wilson MA, Boyden ES. Imaging the voltage of neurons distributed across entire brains of larval zebrafish. Biorxiv : the Preprint Server For Biology. PMID 38168290 DOI: 10.1101/2023.12.15.571964  0.739
2023 Lowet E, Sheehan DJ, Chialva U, De Oliveira Pena R, Mount RA, Xiao S, Zhou SL, Tseng HA, Gritton H, Shroff S, Kondabolu K, Cheung C, Wang Y, Piatkevich KD, Boyden ES, et al. Theta and gamma rhythmic coding through two spike output modes in the hippocampus during spatial navigation. Cell Reports. 42: 112906. PMID 37540599 DOI: 10.1016/j.celrep.2023.112906  0.733
2023 Zhang J, Newman J, Wang Z, Qian Y, Guo W, Chen ZS, Linghu C, Etienne-Cummings R, Fossum E, Boyden E, Wilson M. Pixel-wise programmability enables dynamic high-SNR cameras for high-speed microscopy. Biorxiv : the Preprint Server For Biology. PMID 37425952 DOI: 10.1101/2023.06.27.546748  0.79
2023 Vizcaíno JP, Symvoulidis P, Wang Z, Jelten J, Favaro P, Boyden ES, Lasser T. Fast light-field 3D microscopy with out-of-distribution detection and adaptation through Conditional Normalizing Flows. Arxiv. PMID 37396615  0.713
2023 Pigoni M, Uzquiano A, Paulsen B, Kedaigle A, Yang SM, Symvoulidis P, Adiconis X, Velasco S, Sartore R, Kim K, Tucewicz A, Tropp SY, Tsafou K, Jin X, Barrett L, ... ... Boyden E, et al. Cell-type specific defects in PTEN-mutant cortical organoids converge on abnormal circuit activity. Human Molecular Genetics. PMID 37384417 DOI: 10.1093/hmg/ddad107  0.739
2023 Lauenburg L, Lin Z, Zhang R, Santos MD, Huang S, Arganda-Carreras I, Boyden ES, Pfister H, Wei D. 3D Domain Adaptive Instance Segmentation Via Cyclic Segmentation GANs. Ieee Journal of Biomedical and Health Informatics. PMID 37252868 DOI: 10.1109/JBHI.2023.3281332  0.574
2023 Al Mahbuba D, Masuko S, Wang S, Syangtan D, Kang JS, Song Y, Shin TW, Xia K, Zhang F, Linhardt RJ, Boyden ES, Kiessling LL. Dynamic Changes in Heparan Sulfate Nanostructure in Human Pluripotent Stem Cell Differentiation. Acs Nano. PMID 37042659 DOI: 10.1021/acsnano.2c10072  0.603
2023 Linghu C, An B, Shpokayte M, Celiker OT, Shmoel N, Zhang R, Zhang C, Park D, Park WM, Ramirez S, Boyden ES. Recording of cellular physiological histories along optically readable self-assembling protein chains. Nature Biotechnology. PMID 36593405 DOI: 10.1038/s41587-022-01586-7  0.793
2022 Sarkar D, Kang J, Wassie AT, Schroeder ME, Peng Z, Tarr TB, Tang AH, Niederst ED, Young JZ, Su H, Park D, Yin P, Tsai LH, Blanpied TA, Boyden ES. Revealing nanostructures in brain tissue via protein decrowding by iterative expansion microscopy. Nature Biomedical Engineering. PMID 36038771 DOI: 10.1038/s41551-022-00912-3  0.656
2022 Torres Cabán CC, Yang M, Lai C, Yang L, Subach FV, Smith BO, Piatkevich KD, Boyden ES. Tuning the Sensitivity of Genetically Encoded Fluorescent Potassium Indicators through Structure-Guided and Genome Mining Strategies. Acs Sensors. PMID 35427452 DOI: 10.1021/acssensors.1c02201  0.702
2022 Paulsen B, Velasco S, Kedaigle AJ, Pigoni M, Quadrato G, Deo AJ, Adiconis X, Uzquiano A, Sartore R, Yang SM, Simmons SK, Symvoulidis P, Kim K, Tsafou K, Podury A, ... ... Boyden ES, et al. Autism genes converge on asynchronous development of shared neuron classes. Nature. PMID 35110736 DOI: 10.1038/s41586-021-04358-6  0.713
2021 Babakhanova S, Jung EE, Namikawa K, Zhang H, Wang Y, Subach OM, Korzhenevskiy DA, Rakitina TV, Xiao X, Wang W, Shi J, Drobizhev M, Park D, Eisenhard L, Tang H, ... ... Boyden ES, et al. Rapid Directed Molecular Evolution of Fluorescent Proteins in Mammalian Cells. Protein Science : a Publication of the Protein Society. PMID 34913537 DOI: 10.1002/pro.4261  0.757
2021 Xiao S, Lowet E, Gritton HJ, Fabris P, Wang Y, Sherman J, Mount RA, Tseng HA, Man HY, Straub C, Piatkevich KD, Boyden ES, Mertz J, Han X. Large-scale voltage imaging in behaving mice using targeted illumination. Iscience. 24: 103263. PMID 34761183 DOI: 10.1016/j.isci.2021.103263  0.748
2021 Gao R, Yu CJ, Gao L, Piatkevich KD, Neve RL, Munro JB, Upadhyayula S, Boyden ES. A highly homogeneous polymer composed of tetrahedron-like monomers for high-isotropy expansion microscopy. Nature Nanotechnology. PMID 33782587 DOI: 10.1038/s41565-021-00875-7  0.641
2021 Liu S, Punthambaker S, Iyer EPR, Ferrante T, Goodwin D, Fürth D, Pawlowski AC, Jindal K, Tam JM, Mifflin L, Alon S, Sinha A, Wassie AT, Chen F, Cheng A, ... ... Boyden ES, et al. Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses. Nucleic Acids Research. PMID 33693773 DOI: 10.1093/nar/gkab120  0.714
2021 Alon S, Goodwin DR, Sinha A, Wassie AT, Chen F, Daugharthy ER, Bando Y, Kajita A, Xue AG, Marrett K, Prior R, Cui Y, Payne AC, Yao CC, Suk HJ, ... ... Boyden ES, et al. Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems. Science (New York, N.Y.). 371. PMID 33509999 DOI: 10.1126/science.aax2656  0.725
2020 Linghu C, Johnson SL, Valdes PA, Shemesh OA, Park WM, Park D, Piatkevich KD, Wassie AT, Liu Y, An B, Barnes SA, Celiker OT, Yao CC, Yu CJ, Wang R, ... ... Boyden ES, et al. Spatial Multiplexing of Fluorescent Reporters for Imaging Signaling Network Dynamics. Cell. PMID 33232692 DOI: 10.1016/j.cell.2020.10.035  0.783
2020 Qian Y, Cosio DMO, Piatkevich KD, Aufmkolk S, Su WC, Celiker OT, Schohl A, Murdock MH, Aggarwal A, Chang YF, Wiseman PW, Ruthazer ES, Boyden ES, Campbell RE. Improved genetically encoded near-infrared fluorescent calcium ion indicators for in vivo imaging. Plos Biology. 18: e3000965. PMID 33232322 DOI: 10.1371/journal.pbio.3000965  0.743
2020 Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F. RNA timestamps identify the age of single molecules in RNA sequencing. Nature Biotechnology. PMID 33077959 DOI: 10.1038/s41587-020-0704-z  0.614
2020 Shen FY, Harrington MM, Walker LA, Cheng HPJ, Boyden ES, Cai D. Light microscopy based approach for mapping connectivity with molecular specificity. Nature Communications. 11: 4632. PMID 32934230 DOI: 10.1038/s41467-020-18422-8  0.716
2020 Gong X, Mendoza-Halliday D, Ting JT, Kaiser T, Sun X, Bastos AM, Wimmer RD, Guo B, Chen Q, Zhou Y, Pruner M, Wu CW, Park D, Deisseroth K, Barak B, ... Boyden ES, et al. An Ultra-Sensitive Step-Function Opsin for Minimally Invasive Optogenetic Stimulation in Mice and Macaques. Neuron. 107: 197. PMID 32645306 DOI: 10.1016/j.neuron.2020.06.018  0.642
2020 Shemesh OA, Linghu C, Piatkevich KD, Goodwin D, Celiker OT, Gritton HJ, Romano MF, Gao R, Yu CJ, Tseng HA, Bensussen S, Narayan S, Yang CT, Freifeld L, Siciliano CA, ... ... Boyden ES, et al. Precision Calcium Imaging of Dense Neural Populations via a Cell-Body-Targeted Calcium Indicator. Neuron. PMID 32592656 DOI: 10.1016/J.Neuron.2020.05.029  0.797
2020 Zhang C, Kang JS, Asano SM, Gao R, Boyden ES. Expansion Microscopy for Beginners: Visualizing Microtubules in Expanded Cultured HeLa Cells. Current Protocols in Neuroscience. 92: e96. PMID 32497404 DOI: 10.1002/Cpns.96  0.333
2020 Yu CJ, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Expansion microscopy of . Elife. 9. PMID 32356725 DOI: 10.7554/Elife.46249  0.464
2020 Gong X, Mendoza-Halliday D, Ting JT, Kaiser T, Sun X, Bastos AM, Wimmer RD, Guo B, Chen Q, Zhou Y, Pruner M, Wu CW, Park D, Deisseroth K, Barak B, ... Boyden ES, et al. An Ultra-Sensitive Step-Function Opsin for Minimally Invasive Optogenetic Stimulation in Mice and Macaques. Neuron. PMID 32353253 DOI: 10.1016/J.Neuron.2020.03.032  0.729
2020 Bucur O, Fu F, Calderon M, Mylvaganam GH, Ly NL, Day J, Watkin S, Walker BD, Boyden ES, Zhao Y. Nanoscale imaging of clinical specimens using conventional and rapid-expansion pathology. Nature Protocols. PMID 32238952 DOI: 10.1038/S41596-020-0300-1  0.458
2020 Subach OM, Sotskov VP, Plusnin VV, Gruzdeva AM, Barykina NV, Ivashkina OI, Anokhin KV, Nikolaeva AY, Korzhenevskiy DA, Vlaskina AV, Lazarenko VA, Boyko KM, Rakitina TV, Varizhuk AM, Pozmogova GE, ... ... Boyden ES, et al. Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein. International Journal of Molecular Sciences. 21. PMID 32121243 DOI: 10.3390/Ijms21051644  0.702
2020 Fan LZ, Kheifets S, Böhm UL, Wu H, Piatkevich KD, Xie ME, Parot V, Ha Y, Evans KE, Boyden ES, Takesian AE, Cohen AE. All-Optical Electrophysiology Reveals the Role of Lateral Inhibition in Sensory Processing in Cortical Layer 1. Cell. PMID 31978320 DOI: 10.1016/J.Cell.2020.01.001  0.676
2020 Yu C(, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Author response: Expansion microscopy of C. elegans Elife. DOI: 10.7554/Elife.46249.Sa2  0.319
2020 Yoon Y, Wang Z, Pak N, Park D, Dai P, Kang JS, Suk H, Symvoulidis P, Guner-Ataman B, Wang K, Boyden ES. Sparse decomposition light-field microscopy for high speed imaging of neuronal activity Optica. 7: 1457. DOI: 10.1364/OPTICA.392805  0.611
2020 Sunshine MD, Cassarà AM, Neufeld EM, Grossman N, Otto KJ, Boyden ES, Fuller DD. Phrenic motor neuron activation using temporal interference stimulation The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.06546  0.306
2019 Piatkevich KD, Bensussen S, Tseng HA, Shroff SN, Lopez-Huerta VG, Park D, Jung EE, Shemesh OA, Straub C, Gritton HJ, Romano MF, Costa E, Sabatini BL, Fu Z, Boyden ES, et al. Population imaging of neural activity in awake behaving mice. Nature. PMID 31597963 DOI: 10.1038/S41586-019-1641-1  0.793
2019 Ramirez-Zamora A, Giordano J, Boyden ES, Gradinaru V, Gunduz A, Starr PA, Sheth SA, McIntyre CC, Fox MD, Vitek J, Vedam-Mai V, Akbar U, Almeida L, Bronte-Stewart HM, Mayberg HS, et al. Proceedings of the Sixth Deep Brain Stimulation Think Tank Modulation of Brain Networks and Application of Advanced Neuroimaging, Neurophysiology, and Optogenetics. Frontiers in Neuroscience. 13: 936. PMID 31572109 DOI: 10.3389/Fnins.2019.00936  0.565
2019 Anikeeva P, Boyden E, Brangwynne C, Cissé II, Fiehn O, Fromme P, Gingras AC, Greene CS, Heard E, Hell SW, Hillman E, Jensen GJ, Karchin R, Kiessling LL, Kleinstiver BP, et al. Voices in methods development. Nature Methods. 16: 945-951. PMID 31562479 DOI: 10.1038/S41592-019-0585-6  0.476
2019 Guo SM, Veneziano R, Gordonov S, Li L, Danielson E, Perez de Arce K, Park D, Kulesa AB, Wamhoff EC, Blainey PC, Boyden ES, Cottrell JR, Bathe M. Multiplexed and high-throughput neuronal fluorescence imaging with diffusible probes. Nature Communications. 10: 4377. PMID 31558769 DOI: 10.1038/S41467-019-12372-6  0.414
2019 Saka SK, Wang Y, Kishi JY, Zhu A, Zeng Y, Xie W, Kirli K, Yapp C, Cicconet M, Beliveau BJ, Lapan SW, Yin S, Lin M, Boyden ES, Kaeser PS, et al. Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues. Nature Biotechnology. PMID 31427819 DOI: 10.1038/S41587-019-0207-Y  0.336
2019 Suk HJ, Boyden ES, van Welie I. Advances in the automation of whole-cell patch clamp technology. Journal of Neuroscience Methods. 326: 108357. PMID 31336060 DOI: 10.1016/j.jneumeth.2019.108357  0.331
2019 Adaikkan C, Middleton SJ, Marco A, Pao PC, Mathys H, Kim DN, Gao F, Young JZ, Suk HJ, Boyden ES, McHugh TJ, Tsai LH. Gamma Entrainment Binds Higher-Order Brain Regions and Offers Neuroprotection. Neuron. PMID 31076275 DOI: 10.1016/j.neuron.2019.04.011  0.341
2019 Kolb I, Landry C, Yip M, Lewallen C, Stoy W, Lee J, Felouzis A, Yang B, Boyden E, Rozell CJ, Forest C. PatcherBot: a single-cell electrophysiology robot for adherent cells and brain slices. Journal of Neural Engineering. PMID 30970335 DOI: 10.1088/1741-2552/Ab1834  0.303
2019 Holst G, Stoy WA, Yang B, Kolb I, Kodandaramaiah SB, Li L, Knoblich U, Zeng H, Haider B, Boyden ES, Forest CR. Autonomous patch clamp robot for functional characterization of neurons in vivo: development and application to mouse visual cortex. Journal of Neurophysiology. PMID 30969898 DOI: 10.1152/Jn.00738.2018  0.356
2019 Rodriques SG, Marblestone AH, Boyden ES. A theoretical analysis of single molecule protein sequencing via weak binding spectra. Plos One. 14: e0212868. PMID 30921350 DOI: 10.1371/Journal.Pone.0212868  0.304
2019 Martorell AJ, Paulson AL, Suk HJ, Abdurrob F, Drummond GT, Guan W, Young JZ, Kim DN, Kritskiy O, Barker SJ, Mangena V, Prince SM, Brown EN, Chung K, Boyden ES, et al. Multi-sensory Gamma Stimulation Ameliorates Alzheimer's-Associated Pathology and Improves Cognition. Cell. PMID 30879788 DOI: 10.1016/J.Cell.2019.02.014  0.769
2019 Stahlberg MA, Ramakrishnan C, Willig KI, Boyden ES, Deisseroth K, Dean C. Investigating the feasibility of channelrhodopsin variants for nanoscale optogenetics. Neurophotonics. 6: 015007. PMID 30854405 DOI: 10.1117/1.NPh.6.1.015007  0.522
2019 Qian Y, Piatkevich KD, Mc Larney B, Abdelfattah AS, Mehta S, Murdock MH, Gottschalk S, Molina RS, Zhang W, Chen Y, Wu J, Drobizhev M, Hughes TE, Zhang J, Schreiter ER, ... ... Boyden ES, et al. A genetically encoded near-infrared fluorescent calcium ion indicator. Nature Methods. PMID 30664778 DOI: 10.1038/S41592-018-0294-6  0.729
2019 Gao R, Asano SM, Upadhyayula S, Pisarev I, Milkie DE, Liu TL, Singh V, Graves A, Huynh GH, Zhao Y, Bogovic J, Colonell J, Ott CM, Zugates C, Tappan S, ... ... Boyden ES, et al. Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution. Science (New York, N.Y.). 363. PMID 30655415 DOI: 10.1126/Science.Aau8302  0.533
2019 Mederos S, Hernández-Vivanco A, Ramírez-Franco J, Martín-Fernández M, Navarrete M, Yang A, Boyden ES, Perea G. Melanopsin for precise optogenetic activation of astrocyte-neuron networks. Glia. PMID 30632636 DOI: 10.1002/glia.23580  0.388
2019 Cho YK, Park D, Yang A, Chen F, Chuong AS, Klapoetke NC, Boyden ES. Multidimensional screening yields channelrhodopsin variants having improved photocurrent and order-of-magnitude reductions in calcium and proton currents. The Journal of Biological Chemistry. PMID 30610117 DOI: 10.1074/Jbc.Ra118.006996  0.416
2019 Wassie AT, Zhao Y, Boyden ES. Expansion microscopy: principles and uses in biological research. Nature Methods. 16: 33-41. PMID 30573813 DOI: 10.1038/S41592-018-0219-4  0.485
2019 Gambarotto D, Zwettler FU, Le Guennec M, Schmidt-Cernohorska M, Fortun D, Borgers S, Heine J, Schloetel JG, Reuss M, Unser M, Boyden ES, Sauer M, Hamel V, Guichard P. Imaging cellular ultrastructures using expansion microscopy (U-ExM). Nature Methods. 16: 71-74. PMID 30559430 DOI: 10.1038/S41592-018-0238-1  0.307
2018 Oran D, Rodriques SG, Gao R, Asano S, Skylar-Scott MA, Chen F, Tillberg PW, Marblestone AH, Boyden ES. 3D nanofabrication by volumetric deposition and controlled shrinkage of patterned scaffolds. Science (New York, N.Y.). 362: 1281-1285. PMID 30545883 DOI: 10.1126/Science.Aau5119  0.344
2018 Scholvin J, Zorzos A, Kinney J, Bernstein J, Moore-Kochlacs C, Kopell N, Fonstad C, Boyden ES. Scalable, Modular Three-Dimensional Silicon Microelectrode Assembly via Electroless Plating. Micromachines. 9. PMID 30424369 DOI: 10.3390/Mi9090436  0.624
2018 Igarashi M, Nozumi M, Wu LG, Cella Zanacchi F, Katona I, Barna L, Xu P, Zhang M, Xue F, Boyden E. New observations in neuroscience using superresolution microscopy. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 38: 9459-9467. PMID 30381437 DOI: 10.1523/Jneurosci.1678-18.2018  0.31
2018 Asano SM, Gao R, Wassie AT, Tillberg PW, Chen F, Boyden ES. Expansion Microscopy: Protocols for Imaging Proteins and RNA in Cells and Tissues. Current Protocols in Cell Biology. e56. PMID 30070431 DOI: 10.1002/Cpcb.56  0.444
2018 Iaccarino HF, Singer AC, Martorell AJ, Rudenko A, Gao F, Gillingham TZ, Mathys H, Seo J, Kritskiy O, Abdurrob F, Adaikkan C, Canter RG, Rueda R, Brown EN, Boyden ES, et al. Author Correction: Gamma frequency entrainment attenuates amyloid load and modifies microglia. Nature. PMID 30046102 DOI: 10.1038/S41586-018-0351-4  0.514
2018 Daigle TL, Madisen L, Hage TA, Valley MT, Knoblich U, Larsen RS, Takeno MM, Huang L, Gu H, Larsen R, Mills M, Bosma-Moody A, Siverts LA, Walker M, Graybuck LT, ... ... Boyden ES, et al. A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality. Cell. 174: 465-480.e22. PMID 30007418 DOI: 10.1016/J.Cell.2018.06.035  0.331
2018 Allen BD, Moore-Kochlacs C, Bernstein JG, Kinney J, Scholvin J, Seoane L, Chronopoulos C, Lamantia C, Kodandaramaiah SB, Tegmark M, Boyden ES. Automated in vivo patch clamp evaluation of extracellular multielectrode array spike recording capability. Journal of Neurophysiology. PMID 29995597 DOI: 10.1152/Jn.00650.2017  0.656
2018 Alon S, Huynh GH, Boyden ES. Expansion Microscopy: Enabling Single Cell Analysis In Intact Biological Systems. The Febs Journal. PMID 29938896 DOI: 10.1111/febs.14597  0.333
2018 Migliori B, Datta MS, Dupre C, Apak MC, Asano S, Gao R, Boyden ES, Hermanson O, Yuste R, Tomer R. Light sheet theta microscopy for rapid high-resolution imaging of large biological samples. Bmc Biology. 16: 57. PMID 29843722 DOI: 10.1186/S12915-018-0521-8  0.336
2018 Shemesh OA, Tanese D, Zampini V, Linghu C, Piatkevich K, Ronzitti E, Papagiakoumou E, Boyden ES, Emiliani V. Publisher Correction: Temporally precise single-cell-resolution optogenetics. Nature Neuroscience. PMID 29549318 DOI: 10.1038/s41593-018-0097-1  0.763
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, ... ... Boyden ES, et al. Publisher Correction: A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29520042 DOI: 10.1038/S41589-018-0023-6  0.754
2018 Piatkevich KD, Jung EE, Straub C, Linghu C, Park D, Suk HJ, Hochbaum DR, Goodwin D, Pnevmatikakis E, Pak N, Kawashima T, Yang CT, Rhoades JL, Shemesh O, Asano S, ... ... Boyden ES, et al. A robotic multidimensional directed evolution approach applied to fluorescent voltage reporters. Nature Chemical Biology. PMID 29483642 DOI: 10.1038/S41589-018-0004-9  0.799
2018 Senova S, Poupon C, Dauguet J, Stewart HJ, Dugué GP, Jan C, Hosomi K, Ralph GS, Barnes L, Drouot X, Pouzat C, Mangin JF, Pain F, Doignon I, Aron-Badin R, ... ... Boyden ES, et al. Optogenetic Tractography for anatomo-functional characterization of cortico-subcortical neural circuits in non-human primates. Scientific Reports. 8: 3362. PMID 29463867 DOI: 10.1038/S41598-018-21486-8  0.324
2018 Karagiannis ED, Boyden ES. Expansion microscopy: development and neuroscience applications. Current Opinion in Neurobiology. 50: 56-63. PMID 29316506 DOI: 10.1016/J.Conb.2017.12.012  0.339
2018 Kodandaramaiah SB, Flores FJ, Holst GL, Singer AC, Han X, Brown EN, Boyden ES, Forest CR. Multi-neuron intracellular recording in vivo via interacting autopatching robots. Elife. 7. PMID 29297466 DOI: 10.7554/Elife.24656  0.705
2017 Kolb I, Franzesi GT, Wang M, Kodandaramaiah SB, Forest CR, Boyden ES, Singer AC. Evidence for long-timescale patterns of synaptic inputs in CA1 of awake behaving mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 29279309 DOI: 10.1523/Jneurosci.1519-17.2017  0.585
2017 Shemesh OA, Tanese D, Zampini V, Linghu C, Piatkevich K, Ronzitti E, Papagiakoumou E, Boyden ES, Emiliani V. Temporally precise single-cell-resolution optogenetics. Nature Neuroscience. 20: 1796-1806. PMID 29184208 DOI: 10.1038/s41593-017-0018-8  0.808
2017 Freifeld L, Odstrcil I, Förster D, Ramirez A, Gagnon JA, Randlett O, Costa EK, Asano S, Celiker OT, Gao R, Martin-Alarcon DA, Reginato P, Dick C, Chen L, Schoppik D, ... ... Boyden ES, et al. Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proceedings of the National Academy of Sciences of the United States of America. PMID 29162696 DOI: 10.1073/Pnas.1706281114  0.782
2017 Rowlands CJ, Park D, Bruns OT, Piatkevich KD, Fukumura D, Jain RK, Bawendi MG, Boyden ES, So PT. Wide-field three-photon excitation in biological samples. Light, Science & Applications. 6: e16255. PMID 29152380 DOI: 10.1038/Lsa.2016.255  0.679
2017 Richter KN, Revelo NH, Seitz KJ, Helm MS, Sarkar D, Saleeb RS, D'Este E, Eberle J, Wagner E, Vogl C, Lazaro DF, Richter F, Coy-Vergara J, Coceano G, Boyden ES, et al. Glyoxal as an alternative fixative to formaldehyde in immunostaining and super-resolution microscopy. The Embo Journal. PMID 29146773 DOI: 10.15252/Embj.201695709  0.324
2017 Yoon YG, Dai P, Wohlwend J, Chang JB, Marblestone AH, Boyden ES. Feasibility of 3D Reconstruction of Neural Morphology Using Expansion Microscopy and Barcode-Guided Agglomeration. Frontiers in Computational Neuroscience. 11: 97. PMID 29114215 DOI: 10.3389/Fncom.2017.00097  0.636
2017 Zhang YS, Santiago GT, Alvarez MM, Schiff SJ, Boyden ES, Khademhosseini A. Expansion Mini-Microscopy: An Enabling Alternative in Point-of-Care Diagnostics. Current Opinion in Biomedical Engineering. 1: 45-53. PMID 29062977 DOI: 10.1016/J.Cobme.2017.03.001  0.313
2017 Piatkevich KD, Suk HJ, Kodandaramaiah SB, Yoshida F, DeGennaro EM, Drobizhev M, Hughes TE, Desimone R, Boyden ES, Verkhusha VV. Near-Infrared Fluorescent Proteins Engineered from Bacterial Phytochromes in Neuroimaging. Biophysical Journal. PMID 29017728 DOI: 10.1016/J.Bpj.2017.09.007  0.797
2017 Acker LC, Pino EN, Boyden ES, Desimone R. Large Volume, Behaviorally-relevant Illumination for Optogenetics in Non-human Primates. Journal of Visualized Experiments : Jove. PMID 28994798 DOI: 10.3791/56330  0.667
2017 Ronzitti E, Conti R, Zampini V, Tanese D, Foust AJ, Klapoetke N, Boyden ES, Papagiakoumou E, Emiliani V. Sub-millisecond optogenetic control of neuronal firing with two-photon holographic photoactivation of Chronos. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 28972125 DOI: 10.1523/Jneurosci.1246-17.2017  0.409
2017 Suk HJ, van Welie I, Kodandaramaiah SB, Allen B, Forest CR, Boyden ES. Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo. Neuron. 96: 244-245. PMID 28957673 DOI: 10.1016/J.Neuron.2017.09.012  0.339
2017 Wang Y, Woehrstein JB, Donoghue N, Dai M, Avendano MS, Schackmann RCJ, Zoeller J, Wang SSH, Tillberg PW, Park D, Lapan SW, Boyden ES, Brugge JS, Kaeser PS, Church G, et al. Rapid sequential in situ multiplexing with DNA-Exchange-Imaging in Neuronal Cells and Tissues. Nano Letters. PMID 28933153 DOI: 10.1021/Acs.Nanolett.7B02716  0.341
2017 Suk HJ, van Welie I, Kodandaramaiah SB, Allen B, Forest CR, Boyden ES. Closed-Loop Real-Time Imaging Enables Fully Automated Cell-Targeted Patch-Clamp Neural Recording In Vivo. Neuron. 95: 1037-1047.e11. PMID 28858614 DOI: 10.1016/J.Neuron.2017.08.011  0.384
2017 Barykina NV, Subach OM, Piatkevich KD, Jung EE, Malyshev AY, Smirnov IV, Bogorodskiy AO, Borshchevskiy VI, Varizhuk AM, Pozmogova GE, Boyden ES, Anokhin KV, Enikolopov GN, Subach FV. Green fluorescent genetically encoded calcium indicator based on calmodulin/M13-peptide from fungi. Plos One. 12: e0183757. PMID 28837632 DOI: 10.1371/Journal.Pone.0183757  0.785
2017 Zhao Y, Bucur O, Irshad H, Chen F, Weins A, Stancu AL, Oh EY, DiStasio M, Torous V, Glass B, Stillman IE, Schnitt SJ, Beck AH, Boyden ES. Nanoscale imaging of clinical specimens using pathology-optimized expansion microscopy. Nature Biotechnology. PMID 28714966 DOI: 10.1038/Nbt.3892  0.533
2017 Caravaca AS, Tsaava T, Goldman L, Silverman H, Riggott G, Chavan S, Bouton C, Tracey KJ, Desimone R, Boyden E, Sohal HS, Olofsson PS. A novel flexible cuff-like microelectrode for dual purpose, acute and chronic electrical interfacing with the mouse cervical vagus nerve. Journal of Neural Engineering. PMID 28628030 DOI: 10.1088/1741-2552/Aa7A42  0.732
2017 Stoy WA, Kolb I, Holst G, Liew YJ, Pala A, Yang B, Boyden ES, Stanley GB, Forest CR. Robotic navigation to sub-cortical neural tissue for intracellular electrophysiology in vivo. Journal of Neurophysiology. jn.00117.2017. PMID 28592685 DOI: 10.1152/Jn.00117.2017  0.329
2017 Grossman N, Bono D, Dedic N, Kodandaramaiah SB, Rudenko A, Suk HJ, Cassara AM, Neufeld E, Kuster N, Tsai LH, Pascual-Leone A, Boyden ES. Noninvasive Deep Brain Stimulation via Temporally Interfering Electric Fields. Cell. 169: 1029-1041.e16. PMID 28575667 DOI: 10.1016/j.cell.2017.05.024  0.357
2017 Singer AC, Talei Franzesi G, Kodandaramaiah SB, Flores FJ, Cohen JD, Lee AK, Börgers C, Forest CR, Kopell NJ, Boyden ES. Mesoscale-duration activated states gate spiking in response to fast rises in membrane voltage in the awake brain. Journal of Neurophysiology. jn.00116.2017. PMID 28566460 DOI: 10.1152/Jn.00116.2017  0.618
2017 Quadrato G, Nguyen T, Macosko EZ, Sherwood JL, Min Yang S, Berger DR, Maria N, Scholvin J, Goldman M, Kinney JP, Boyden ES, Lichtman JW, Williams ZM, McCarroll SA, Arlotta P. Cell diversity and network dynamics in photosensitive human brain organoids. Nature. PMID 28445462 DOI: 10.1038/Nature22047  0.393
2017 Adamala KP, Martin-Alarcon DA, Guthrie-Honea KR, Boyden ES. Engineering genetic circuit interactions within and between synthetic minimal cells. Nature Chemistry. 9: 431-439. PMID 28430194 DOI: 10.1038/Nchem.2644  0.65
2017 Chang JB, Chen F, Yoon YG, Jung EE, Babcock H, Kang JS, Asano S, Suk HJ, Pak N, Tillberg PW, Wassie AT, Cai D, Boyden ES. Iterative expansion microscopy. Nature Methods. PMID 28417997 DOI: 10.1038/Nmeth.4261  0.783
2017 Kruss S, Salem DP, Vuković L, Lima B, Vander Ende E, Boyden ES, Strano MS. High-resolution imaging of cellular dopamine efflux using a fluorescent nanosensor array. Proceedings of the National Academy of Sciences of the United States of America. PMID 28179565 DOI: 10.1073/Pnas.1613541114  0.31
2017 de Hoop M, Donoughe S, Boyden E. Webinar | What automation can do for you: The benefits and pitfalls of automating your microscopy research Science. 355: 421.2-421. DOI: 10.1126/Science.355.6323.421-B  0.304
2017 Yoshida F, Boyden ES. O3-6-04. Optogenetically induced motor evoked potentials in mice Clinical Neurophysiology. 128: e172. DOI: 10.1016/J.Clinph.2017.06.011  0.536
2016 Scholvin J, Kinney JP, Bernstein JG, Moore-Kochlacs C, Kopell NJ, Fonstad CG, Boyden ES. Heterogeneous neural amplifier integration for scalable extracellular microelectrodes. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 2789-2793. PMID 28268897 DOI: 10.1109/EMBC.2016.7591309  0.607
2016 Scholvin J, Kinney JP, Bernstein JG, Moore-Kochlacs C, Kopell NJ, Fonstad CG, Boyden ES, Scholvin J, Kinney JP, Bernstein JG, Moore-Kochlacs C, Kopell NJ, Fonstad CG, Boyden ES, Bernstein JG, ... ... Boyden ES, et al. Heterogeneous neural amplifier integration for scalable extracellular microelectrodes. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2016: 2789-2793. PMID 28227098 DOI: 10.1109/EMBC.2016.7591309  0.607
2016 Iaccarino HF, Singer AC, Martorell AJ, Rudenko A, Gao F, Gillingham TZ, Mathys H, Seo J, Kritskiy O, Abdurrob F, Adaikkan C, Canter RG, Rueda R, Brown EN, Boyden ES, et al. Gamma frequency entrainment attenuates amyloid load and modifies microglia. Nature. 540: 230-235. PMID 27929004 DOI: 10.1038/Nature20587  0.547
2016 Zhuo JM, Tseng HA, Desai M, Bucklin ME, Mohammed AI, Robinson NT, Boyden ES, Rangel LM, Jasanoff AP, Gritton HJ, Han X. Young adult born neurons enhance hippocampal dependent performance via influences on bilateral networks. Elife. 5. PMID 27914197 DOI: 10.7554/Elife.22429  0.54
2016 Acker L, Pino EN, Boyden ES, Desimone R. FEF inactivation with improved optogenetic methods. Proceedings of the National Academy of Sciences of the United States of America. PMID 27807140 DOI: 10.1073/Pnas.1610784113  0.685
2016 Taylor NE, Van Dort CJ, Kenny JD, Pei J, Guidera JA, Vlasov KY, Lee JT, Boyden ES, Brown EN, Solt K. Optogenetic activation of dopamine neurons in the ventral tegmental area induces reanimation from general anesthesia. Proceedings of the National Academy of Sciences of the United States of America. PMID 27791160 DOI: 10.1073/Pnas.1614340113  0.306
2016 Stauffer WR, Lak A, Yang A, Borel M, Paulsen O, Boyden ES, Schultz W. Dopamine Neuron-Specific Optogenetic Stimulation in Rhesus Macaques. Cell. 166: 1564-1571.e6. PMID 27610576 DOI: 10.1016/J.Cell.2016.08.024  0.361
2016 Wu Q, Kolb I, Callahan BM, Su Z, Stoy W, Kodandaramaiah SB, Neve RL, Zeng H, Boyden ES, Forest CR, Chubykin AA. Integration of autopatching with automated pipette and cell detection in vitro. Journal of Neurophysiology. jn.00386.2016. PMID 27385800 DOI: 10.1152/Jn.00386.2016  0.411
2016 Chen F, Wassie AT, Cote AJ, Sinha A, Alon S, Asano S, Daugharthy ER, Chang JB, Marblestone A, Church GM, Raj A, Boyden ES. Nanoscale imaging of RNA with expansion microscopy. Nature Methods. 13: 679-84. PMID 27376770 DOI: 10.1038/Nmeth.3899  0.396
2016 Tillberg PW, Chen F, Piatkevich KD, Zhao Y, Yu CJ, English BP, Gao L, Martorell A, Suk HJ, Yoshida F, DeGennaro EM, Roossien DH, Gong G, Seneviratne U, Tannenbaum SR, ... ... Boyden ES, et al. Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies. Nature Biotechnology. PMID 27376584 DOI: 10.1038/Nbt.3625  0.791
2016 Adamala KP, Martin-Alarcon DA, Boyden ES. Programmable RNA-binding protein composed of repeats of a single modular unit. Proceedings of the National Academy of Sciences of the United States of America. PMID 27118836 DOI: 10.1073/Pnas.1519368113  0.634
2016 Zhang YS, Chang JB, Alvarez MM, Trujillo-de Santiago G, Aleman J, Batzaya B, Krishnadoss V, Ramanujam AA, Kazemzadeh-Narbat M, Chen F, Tillberg PW, Dokmeci MR, Boyden ES, Khademhosseini A. Hybrid Microscopy: Enabling Inexpensive High-Performance Imaging through Combined Physical and Optical Magnifications. Scientific Reports. 6: 22691. PMID 26975883 DOI: 10.1038/Srep22691  0.418
2016 Kodandaramaiah SB, Holst GL, Wickersham IR, Singer AC, Franzesi GT, McKinnon ML, Forest CR, Boyden ES. Assembly and operation of the autopatcher for automated intracellular neural recording in vivo. Nature Protocols. 11: 634-54. PMID 26938115 DOI: 10.1038/Nprot.2016.007  0.755
2016 Scholvin J, Kinney JP, Bernstein JG, Moore-Kochlacs C, Kopell N, Fonstad CG, Boyden ES. Close-Packed Silicon Microelectrodes for Scalable Spatially Oversampled Neural Recording. Ieee Transactions On Bio-Medical Engineering. 63: 120-30. PMID 26699649 DOI: 10.1109/Tbme.2015.2406113  0.642
2016 Zhuo J, Tseng H, Desai M, Bucklin ME, Mohammed AI, Robinson NT, Boyden ES, Rangel LM, Jasanoff AP, Gritton HJ, Han X. Author response: Young adult born neurons enhance hippocampal dependent performance via influences on bilateral networks Elife. DOI: 10.7554/Elife.22429.012  0.524
2016 Baldauf D, Grossman N, Hu A, Boyden E, Desimone R. Transcranial alternating current stimulation (tACS) reveals causal role of brain oscillations in visual attention Journal of Vision. 16: 937. DOI: 10.1167/16.12.937  0.503
2016 Bucur O, Zhao Y, Boyden E, Beck AH. Abstract 4229: Physical expansion of tissue microarrays for high-resolution imaging of normal and cancer samples with conventional microscopy Cancer Research. 76: 4229-4229. DOI: 10.1158/1538-7445.Am2016-4229  0.458
2016 Boyden ES. Tools for Analyzing and Repairing Complex Biological Systems Biophysical Journal. 110: 364a. DOI: 10.1016/J.BPJ.2015.11.1963  0.373
2015 Bernstein JG, Allen BD, Guerra AA, Boyden ES. Processes for design, construction and utilisation of arrays of light-emitting diodes and light-emitting diode-coupled optical fibres for multi-site brain light delivery. Journal of Engineering (Stevenage, England). 2015. PMID 26798482 DOI: 10.1049/Joe.2014.0304  0.638
2015 Kinney JP, Bernstein JG, Meyer AJ, Barber JB, Bolivar M, Newbold B, Scholvin J, Moore-Kochlacs C, Wentz CT, Kopell NJ, Boyden ES. A direct-to-drive neural data acquisition system. Frontiers in Neural Circuits. 9: 46. PMID 26388740 DOI: 10.3389/Fncir.2015.00046  0.762
2015 Boyden ES. Optogenetics and the future of neuroscience. Nature Neuroscience. 18: 1200-1. PMID 26308980 DOI: 10.1038/nn.4094  0.347
2015 Rueckemann JW, DiMauro AJ, Rangel LM, Han X, Boyden ES, Eichenbaum H. Transient optogenetic inactivation of the medial entorhinal cortex biases the active population of hippocampal neurons. Hippocampus. PMID 26299904 DOI: 10.1002/Hipo.22519  0.56
2015 Baratta MV, Kodandaramaiah SB, Monahan PE, Yao J, Weber MD, Lin PA, Gisabella B, Petrossian N, Amat J, Kim K, Yang A, Forest CR, Boyden ES, Goosens KA. Stress Enables Reinforcement-Elicited Serotonergic Consolidation of Fear Memory. Biological Psychiatry. PMID 26248536 DOI: 10.1016/J.Biopsych.2015.06.025  0.441
2015 Sakaguchi M, Kim K, Yu LM, Hashikawa Y, Sekine Y, Okumura Y, Kawano M, Hayashi M, Kumar D, Boyden ES, McHugh TJ, Hayashi Y. Inhibiting the Activity of CA1 Hippocampal Neurons Prevents the Recall of Contextual Fear Memory in Inducible ArchT Transgenic Mice. Plos One. 10: e0130163. PMID 26075894 DOI: 10.1371/Journal.Pone.0130163  0.347
2015 Guo W, Hight AE, Chen JX, Klapoetke NC, Hancock KE, Shinn-Cunningham BG, Boyden ES, Lee DJ, Polley DB. Hearing the light: neural and perceptual encoding of optogenetic stimulation in the central auditory pathway. Scientific Reports. 5: 10319. PMID 26000557 DOI: 10.1038/Srep10319  0.348
2015 Afraz A, Boyden ES, DiCarlo JJ. Optogenetic and pharmacological suppression of spatial clusters of face neurons reveal their causal role in face gender discrimination. Proceedings of the National Academy of Sciences of the United States of America. 112: 6730-5. PMID 25953336 DOI: 10.1073/pnas.1423328112  0.334
2015 Pak N, Siegle JH, Kinney JP, Denman DJ, Blanche TJ, Boyden ES. Closed-loop, ultraprecise, automated craniotomies. Journal of Neurophysiology. 113: 3943-53. PMID 25855700 DOI: 10.1152/Jn.01055.2014  0.324
2015 Allen BD, Singer AC, Boyden ES. Principles of designing interpretable optogenetic behavior experiments. Learning & Memory (Cold Spring Harbor, N.Y.). 22: 232-8. PMID 25787711 DOI: 10.1101/lm.038026.114  0.573
2015 Madisen L, Garner AR, Shimaoka D, Chuong AS, Klapoetke NC, Li L, van der Bourg A, Niino Y, Egolf L, Monetti C, Gu H, Mills M, Cheng A, Tasic B, Nguyen TN, ... ... Boyden ES, et al. Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance. Neuron. 85: 942-58. PMID 25741722 DOI: 10.1016/J.Neuron.2015.02.022  0.348
2015 Hight AE, Kozin ED, Darrow K, Lehmann A, Boyden E, Brown MC, Lee DJ. Superior temporal resolution of Chronos versus channelrhodopsin-2 in an optogenetic model of the auditory brainstem implant. Hearing Research. 322: 235-41. PMID 25598479 DOI: 10.1016/J.Heares.2015.01.004  0.323
2015 Chen F, Tillberg PW, Boyden ES. Optical imaging. Expansion microscopy. Science (New York, N.Y.). 347: 543-8. PMID 25592419 DOI: 10.1126/Science.1260088  0.429
2015 Darrow KN, Slama MC, Kozin ED, Owoc M, Hancock K, Kempfle J, Edge A, Lacour S, Boyden E, Polley D, Brown MC, Lee DJ. Optogenetic stimulation of the cochlear nucleus using channelrhodopsin-2 evokes activity in the central auditory pathways. Brain Research. 1599: 44-56. PMID 25481416 DOI: 10.1016/J.Brainres.2014.11.044  0.329
2015 Harrison RR, Kolb I, Kodandaramaiah SB, Chubykin AA, Yang A, Bear MF, Boyden ES, Forest CR. Microchip amplifier for in vitro, in vivo, and automated whole cell patch-clamp recording. Journal of Neurophysiology. 113: 1275-82. PMID 25429119 DOI: 10.1152/Jn.00629.2014  0.319
2015 Guo S, Veneziano R, McConnell RE, Agasti S, Gordonov S, Kulesa T, Gertler FB, Blainey P, Boyden E, Yin P, Bathe M. Quantitative Multiplexed Super-Resolution Neuronal Synapse Imaging using DNA-Paint Biophysical Journal. 108: 477a. DOI: 10.1016/J.Bpj.2014.11.2609  0.399
2014 Cybulski TR, Glaser JI, Marblestone AH, Zamft BM, Boyden ES, Church GM, Kording KP. Spatial information in large-scale neural recordings. Frontiers in Computational Neuroscience. 8: 172. PMID 25653613 DOI: 10.3389/Fncom.2014.00172  0.349
2014 Johansen JP, Diaz-Mataix L, Hamanaka H, Ozawa T, Ycu E, Koivumaa J, Kumar A, Hou M, Deisseroth K, Boyden ES, LeDoux JE. Hebbian and neuromodulatory mechanisms interact to trigger associative memory formation. Proceedings of the National Academy of Sciences of the United States of America. 111: E5584-92. PMID 25489081 DOI: 10.1073/Pnas.1421304111  0.479
2014 Boada MD, Martin TJ, Peters CM, Hayashida K, Harris MH, Houle TT, Boyden ES, Eisenach JC, Ririe DG. Fast-conducting mechanoreceptors contribute to withdrawal behavior in normal and nerve injured rats. Pain. 155: 2646-55. PMID 25267211 DOI: 10.1016/J.Pain.2014.09.030  0.326
2014 Chuong AS, Miri ML, Busskamp V, Matthews GA, Acker LC, Sørensen AT, Young A, Klapoetke NC, Henninger MA, Kodandaramaiah SB, Ogawa M, Ramanlal SB, Bandler RC, Allen BD, Forest CR, ... ... Boyden ES, et al. Noninvasive optical inhibition with a red-shifted microbial rhodopsin. Nature Neuroscience. 17: 1123-9. PMID 24997763 DOI: 10.1038/Nn.3752  0.748
2014 Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, Zou P, Kralj JM, Maclaurin D, Smedemark-Margulies N, Saulnier JL, Boulting GL, Straub C, Cho YK, Melkonian M, ... ... Boyden ES, et al. All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins. Nature Methods. 11: 825-33. PMID 24952910 DOI: 10.1038/Nmeth.3000  0.711
2014 Prevedel R, Yoon YG, Hoffmann M, Pak N, Wetzstein G, Kato S, Schrödel T, Raskar R, Zimmer M, Boyden ES, Vaziri A. Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy. Nature Methods. 11: 727-30. PMID 24836920 DOI: 10.1038/Nmeth.2964  0.384
2014 Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, ... ... Boyden ES, et al. Independent optical excitation of distinct neural populations. Nature Methods. 11: 338-46. PMID 24509633 DOI: 10.1038/Nmeth.2836  0.502
2014 Perea G, Yang A, Boyden ES, Sur M. Optogenetic astrocyte activation modulates response selectivity of visual cortex neurons in vivo. Nature Communications. 5: 3262. PMID 24500276 DOI: 10.1038/ncomms4262  0.348
2014 Schmidt D, Tillberg PW, Chen F, Boyden ES. A fully genetically encoded protein architecture for optical control of peptide ligand concentration. Nature Communications. 5: 3019. PMID 24407101 DOI: 10.1038/Ncomms4019  0.395
2014 Moore-Kochlacs C, Scholvin J, Kinney JP, Bernstein JG, Yoon YG, Arfin SK, Kopell N, Boyden ES. Principles of high–fidelity, high–density 3–d neural recording Bmc Neuroscience. 15. DOI: 10.1186/1471-2202-15-S1-P122  0.675
2014 Lehmann AE, Kozin ED, Hight AE, Darrow K, Boyden E, Brown C, Lee DJ. Histologic Analysis of Chronos in an Optogenetic-Based Auditory Brainstem Implant Model Otolaryngology–Head and Neck Surgery. 151: P207-P208. DOI: 10.1177/0194599814541629A222  0.364
2014 Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, Morimoto TK, Chuong AS, Carpenter EJ, Tian Z, Wang J, Xie Y, Yan Z, Zhang Y, Chow BY, ... ... Boyden ES, et al. Corrigendum: Independent optical excitation of distinct neural populations (Nature Methods (2014) 11, (338-346)) Nature Methods. 11: 971. DOI: 10.1038/Nmeth0914-971D  0.418
2013 Marblestone AH, Zamft BM, Maguire YG, Shapiro MG, Cybulski TR, Glaser JI, Amodei D, Stranges PB, Kalhor R, Dalrymple DA, Seo D, Alon E, Maharbiz MM, Carmena JM, Rabaey JM, ... Boyden ES, et al. Physical principles for scalable neural recording. Frontiers in Computational Neuroscience. 7: 137. PMID 24187539 DOI: 10.3389/Fncom.2013.00137  0.371
2013 Glaser JI, Zamft BM, Marblestone AH, Moffitt JR, Tyo K, Boyden ES, Church G, Kording KP. Statistical analysis of molecular signal recording. Plos Computational Biology. 9: e1003145. PMID 23874187 DOI: 10.1371/Journal.Pcbi.1003145  0.333
2013 Kodandaramaiah SB, Boyden ES, Forest CR. In vivo robotics: the automation of neuroscience and other intact-system biological fields. Annals of the New York Academy of Sciences. 1305: 63-71. PMID 23841584 DOI: 10.1111/Nyas.12171  0.303
2013 Tsunematsu T, Tabuchi S, Tanaka KF, Boyden ES, Tominaga M, Yamanaka A. Long-lasting silencing of orexin/hypocretin neurons using archaerhodopsin induces slow-wave sleep in mice. Behavioural Brain Research. 255: 64-74. PMID 23707248 DOI: 10.1016/J.Bbr.2013.05.021  0.32
2013 Kahn I, Knoblich U, Desai M, Bernstein J, Graybiel AM, Boyden ES, Buckner RL, Moore CI. Optogenetic drive of neocortical pyramidal neurons generates fMRI signals that are correlated with spiking activity. Brain Research. 1511: 33-45. PMID 23523914 DOI: 10.1016/J.Brainres.2013.03.011  0.786
2013 Chow BY, Boyden ES. Optogenetics and translational medicine. Science Translational Medicine. 5: 177ps5. PMID 23515075 DOI: 10.1126/scitranslmed.3003101  0.322
2013 Alivisatos AP, Andrews AM, Boyden ES, Chun M, Church GM, Deisseroth K, Donoghue JP, Fraser SE, Lippincott-Schwartz J, Looger LL, Masmanidis S, McEuen PL, Nurmikko AV, Park H, Peterka DS, et al. Nanotools for neuroscience and brain activity mapping. Acs Nano. 7: 1850-66. PMID 23514423 DOI: 10.1021/Nn4012847  0.557
2013 Gurkan UA, Fan Y, Xu F, Erkmen B, Urkac ES, Parlakgul G, Bernstein J, Xing W, Boyden ES, Demirci U. Simple precision creation of digitally specified, spatially heterogeneous, engineered tissue architectures. Advanced Materials (Deerfield Beach, Fla.). 25: 1192-8. PMID 23192949 DOI: 10.1002/Adma.201203261  0.637
2013 Kolb I, Holst G, Goldstein B, Kodandaramaiah SB, Boyden ES, Culurciello E, Forest CR. Automated, in-vivo, whole-cell electrophysiology using an integrated patch-clamp amplifier Bmc Neuroscience. 14: P131. DOI: 10.1186/1471-2202-14-S1-P131  0.356
2012 Cavanaugh J, Monosov IE, McAlonan K, Berman R, Smith MK, Cao V, Wang KH, Boyden ES, Wurtz RH. Optogenetic inactivation modifies monkey visuomotor behavior. Neuron. 76: 901-7. PMID 23217739 DOI: 10.1016/J.Neuron.2012.10.016  0.337
2012 Zorzos AN, Scholvin J, Boyden ES, Fonstad CG. Three-dimensional multiwaveguide probe array for light delivery to distributed brain circuits. Optics Letters. 37: 4841-3. PMID 23202064 DOI: 10.1364/Ol.37.004841  0.339
2012 Lee SH, Kwan AC, Zhang S, Phoumthipphavong V, Flannery JG, Masmanidis SC, Taniguchi H, Huang ZJ, Zhang F, Boyden ES, Deisseroth K, Dan Y. Activation of specific interneurons improves V1 feature selectivity and visual perception. Nature. 488: 379-83. PMID 22878719 DOI: 10.1038/Nature11312  0.551
2012 Gerits A, Farivar R, Rosen BR, Wald LL, Boyden ES, Vanduffel W. Optogenetically induced behavioral and functional network changes in primates. Current Biology : Cb. 22: 1722-6. PMID 22840516 DOI: 10.1016/J.Cub.2012.07.023  0.35
2012 Kodandaramaiah SB, Franzesi GT, Chow BY, Boyden ES, Forest CR. Automated whole-cell patch-clamp electrophysiology of neurons in vivo. Nature Methods. 9: 585-7. PMID 22561988 DOI: 10.1038/Nmeth.1993  0.384
2012 Kim KM, Baratta MV, Yang A, Lee D, Boyden ES, Fiorillo CD. Optogenetic mimicry of the transient activation of dopamine neurons by natural reward is sufficient for operant reinforcement. Plos One. 7: e33612. PMID 22506004 DOI: 10.1371/Journal.Pone.0033612  0.31
2012 Madisen L, Mao T, Koch H, Zhuo JM, Berenyi A, Fujisawa S, Hsu YW, Garcia AJ, Gu X, Zanella S, Kidney J, Gu H, Mao Y, Hooks BM, Boyden ES, et al. A toolbox of Cre-dependent optogenetic transgenic mice for light-induced activation and silencing. Nature Neuroscience. 15: 793-802. PMID 22446880 DOI: 10.1038/Nn.3078  0.566
2012 Börgers C, Talei Franzesi G, Lebeau FE, Boyden ES, Kopell NJ. Minimal size of cell assemblies coordinated by gamma oscillations. Plos Computational Biology. 8: e1002362. PMID 22346741 DOI: 10.1371/Journal.Pcbi.1002362  0.314
2012 Chow BY, Han X, Boyden ES. Genetically encoded molecular tools for light-driven silencing of targeted neurons. Progress in Brain Research. 196: 49-61. PMID 22341320 DOI: 10.1016/B978-0-444-59426-6.00003-3  0.587
2012 Bernstein JG, Garrity PA, Boyden ES. Optogenetics and thermogenetics: technologies for controlling the activity of targeted cells within intact neural circuits. Current Opinion in Neurobiology. 22: 61-71. PMID 22119320 DOI: 10.1016/J.Conb.2011.10.023  0.686
2012 Chow BY, Han X, Bernstein JG, Monahan PE, Boyden ES. Light-activated ion pumps and channels for temporally precise optical control of activity in genetically targeted neurons Neuromethods. 67: 305-338. DOI: 10.1007/7657_2011_10  0.687
2011 Kleinlogel S, Terpitz U, Legrum B, Gökbuget D, Boyden ES, Bamann C, Wood PG, Bamberg E. A gene-fusion strategy for stoichiometric and co-localized expression of light-gated membrane proteins. Nature Methods. 8: 1083-8. PMID 22056675 DOI: 10.1038/Nmeth.1766  0.333
2011 Bernstein JG, Boyden ES. Optogenetic tools for analyzing the neural circuits of behavior. Trends in Cognitive Sciences. 15: 592-600. PMID 22055387 DOI: 10.1016/J.Tics.2011.10.003  0.676
2011 Kahn I, Desai M, Knoblich U, Bernstein J, Henninger M, Graybiel AM, Boyden ES, Buckner RL, Moore CI. Characterization of the functional MRI response temporal linearity via optical control of neocortical pyramidal neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 15086-91. PMID 22016542 DOI: 10.1523/Jneurosci.0007-11.2011  0.778
2011 Boyden ES. A history of optogenetics: the development of tools for controlling brain circuits with light. F1000 Biology Reports. 3: 11. PMID 21876722 DOI: 10.3410/B3-11  0.402
2011 Han X, Chow BY, Zhou H, Klapoetke NC, Chuong A, Rajimehr R, Yang A, Baratta MV, Winkle J, Desimone R, Boyden ES. A high-light sensitivity optical neural silencer: development and application to optogenetic control of non-human primate cortex. Frontiers in Systems Neuroscience. 5: 18. PMID 21811444 DOI: 10.3389/Fnsys.2011.00018  0.706
2011 Tsunematsu T, Kilduff TS, Boyden ES, Takahashi S, Tominaga M, Yamanaka A. Acute optogenetic silencing of orexin/hypocretin neurons induces slow-wave sleep in mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 10529-39. PMID 21775598 DOI: 10.1523/Jneurosci.0784-11.2011  0.341
2011 Wentz CT, Bernstein JG, Monahan P, Guerra A, Rodriguez A, Boyden ES. A wirelessly powered and controlled device for optical neural control of freely-behaving animals. Journal of Neural Engineering. 8: 046021. PMID 21701058 DOI: 10.1088/1741-2560/8/4/046021  0.779
2011 McCarthy MM, Moore-Kochlacs C, Gu X, Boyden ES, Han X, Kopell N. Striatal origin of the pathologic beta oscillations in Parkinson's disease. Proceedings of the National Academy of Sciences of the United States of America. 108: 11620-5. PMID 21697509 DOI: 10.1073/Pnas.1107748108  0.491
2011 Chow BY, Chuong AS, Klapoetke NC, Boyden ES. Synthetic physiology strategies for adapting tools from nature for genetically targeted control of fast biological processes. Methods in Enzymology. 497: 425-43. PMID 21601097 DOI: 10.1016/B978-0-12-385075-1.00018-4  0.344
2011 Desai M, Kahn I, Knoblich U, Bernstein J, Atallah H, Yang A, Kopell N, Buckner RL, Graybiel AM, Moore CI, Boyden ES. Mapping brain networks in awake mice using combined optical neural control and fMRI. Journal of Neurophysiology. 105: 1393-405. PMID 21160013 DOI: 10.1152/Jn.00828.2010  0.779
2010 Zorzos AN, Boyden ES, Fonstad CG. Multiwaveguide implantable probe for light delivery to sets of distributed brain targets. Optics Letters. 35: 4133-5. PMID 21165114 DOI: 10.1364/Ol.35.004133  0.334
2010 Knöpfel T, Lin MZ, Levskaya A, Tian L, Lin JY, Boyden ES. Toward the second generation of optogenetic tools. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 14998-5004. PMID 21068304 DOI: 10.1523/Jneurosci.4190-10.2010  0.395
2010 Chan S, Bernstein J, Boyden E. Scalable fluidic injector arrays for viral targeting of intact 3-D brain circuits Journal of Visualized Experiments : Jove. PMID 20094028 DOI: 10.3791/1489  0.73
2010 Chow BY, Han X, Dobry AS, Qian X, Chuong AS, Li M, Henninger MA, Belfort GM, Lin Y, Monahan PE, Boyden ES. High-performance genetically targetable optical neural silencing by light-driven proton pumps. Nature. 463: 98-102. PMID 20054397 DOI: 10.1038/Nature08652  0.672
2009 Han X, Qian X, Stern P, Chuong AS, Boyden ES. Informational lesions: optical perturbation of spike timing and neural synchrony via microbial opsin gene fusions. Frontiers in Molecular Neuroscience. 2: 12. PMID 19753326 DOI: 10.3389/Neuro.02.012.2009  0.575
2009 Han X, Qian X, Bernstein JG, Zhou HH, Franzesi GT, Stern P, Bronson RT, Graybiel AM, Desimone R, Boyden ES. Millisecond-timescale optical control of neural dynamics in the nonhuman primate brain. Neuron. 62: 191-8. PMID 19409264 DOI: 10.1016/J.Neuron.2009.03.011  0.781
2008 Bernstein JG, Han X, Henninger MA, Ko EY, Qian X, Franzesi GT, McConnell JP, Stern P, Desimone R, Boyden ES. Prosthetic systems for therapeutic optical activation and silencing of genetically-targeted neurons. Proceedings of Spie--the International Society For Optical Engineering. 6854: 68540H. PMID 18458792 DOI: 10.1117/12.768798  0.789
2008 Liao YJ, Safa P, Chen YR, Sobel RA, Boyden ES, Tsien RW. Anti-Ca2+ channel antibody attenuates Ca2+ currents and mimics cerebellar ataxia in vivo. Proceedings of the National Academy of Sciences of the United States of America. 105: 2705-10. PMID 18272482 DOI: 10.1073/Pnas.0710771105  0.504
2007 Wang H, Peca J, Matsuzaki M, Matsuzaki K, Noguchi J, Qiu L, Wang D, Zhang F, Boyden E, Deisseroth K, Kasai H, Hall WC, Feng G, Augustine GJ. High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice. Proceedings of the National Academy of Sciences of the United States of America. 104: 8143-8. PMID 17483470 DOI: 10.1073/Pnas.0700384104  0.572
2007 Han X, Boyden ES. Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution. Plos One. 2: e299. PMID 17375185 DOI: 10.1371/Journal.Pone.0000299  0.597
2006 Zhang F, Wang LP, Boyden ES, Deisseroth K. Channelrhodopsin-2 and optical control of excitable cells. Nature Methods. 3: 785-92. PMID 16990810 DOI: 10.1038/Nmeth936  0.516
2006 Boyden ES, Katoh A, Pyle JL, Chatila TA, Tsien RW, Raymond JL. Selective engagement of plasticity mechanisms for motor memory storage. Neuron. 51: 823-34. PMID 16982426 DOI: 10.1016/J.Neuron.2006.08.026  0.766
2005 Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K. Millisecond-timescale, genetically targeted optical control of neural activity. Nature Neuroscience. 8: 1263-8. PMID 16116447 DOI: 10.1038/Nn1525  0.563
2005 Kimpo RR, Boyden ES, Katoh A, Ke MC, Raymond JL. Distinct patterns of stimulus generalization of increases and decreases in VOR gain. Journal of Neurophysiology. 94: 3092-100. PMID 16033945 DOI: 10.1152/Jn.00048.2005  0.769
2004 Boyden ES, Katoh A, Raymond JL. Cerebellum-dependent learning: the role of multiple plasticity mechanisms. Annual Review of Neuroscience. 27: 581-609. PMID 15217344 DOI: 10.1146/annurev.neuro.27.070203.144238  0.647
2003 Boyden ES, Raymond JL. Active reversal of motor memories reveals rules governing memory encoding. Neuron. 39: 1031-42. PMID 12971901 DOI: 10.1016/S0896-6273(03)00562-2  0.542
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