| Year |
Citation |
Score |
| 2024 |
Abe Y, Kofman ER, Ouyang Z, Cruz-Becerra G, Spann NJ, Seidman JS, Troutman TD, Stender JD, Taylor H, Fan W, Link VM, Shen Z, Sakai J, Downes M, Evans RM, ... Kadonaga JT, et al. A TLR4/TRAF6-dependent signaling pathway mediates NCoR coactivator complex formation for inflammatory gene activation. Proceedings of the National Academy of Sciences of the United States of America. 121: e2316104121. PMID 38165941 DOI: 10.1073/pnas.2316104121 |
0.336 |
|
| 2023 |
Abe Y, Kofman ER, Almeida M, Ouyang Z, Ponte F, Mueller JR, Cruz-Becerra G, Sakai M, Prohaska TA, Spann NJ, Resende-Coelho A, Seidman JS, Stender JD, Taylor H, Fan W, ... ... Kadonaga JT, et al. RANK ligand converts the NCoR/HDAC3 co-repressor to a PGC1β- and RNA-dependent co-activator of osteoclast gene expression. Molecular Cell. 83: 3421-3437.e11. PMID 37751740 DOI: 10.1016/j.molcel.2023.08.029 |
0.405 |
|
| 2023 |
Kadonaga JT. Perspectives on ATP-dependent chromatin remodeling. The Enzymes. 53: 1-6. PMID 37748834 DOI: 10.1016/bs.enz.2023.03.002 |
0.509 |
|
| 2022 |
Fei J, Xu J, Li Z, Xu K, Wang D, Kassavetis GA, Kadonaga JT. NDF is a transcription factor that stimulates elongation by RNA polymerase II. Genes & Development. PMID 35273076 DOI: 10.1101/gad.349150.121 |
0.682 |
|
| 2021 |
Cruz-Becerra G, Kadonaga JT. Reconstitution of Chromatin by Stepwise Salt Dialysis. Bio-Protocol. 11: e3977. PMID 33889671 DOI: 10.21769/BioProtoc.3977 |
0.495 |
|
| 2020 |
Vo Ngoc L, Huang CY, Cassidy CJ, Medrano C, Kadonaga JT. Identification of the human DPR core promoter element using machine learning. Nature. 585: 459-463. PMID 32908305 DOI: 10.1038/S41586-020-2689-7 |
0.493 |
|
| 2020 |
Cruz-Becerra G, Kadonaga JT. Enhancement of homology-directed repair with chromatin donor templates in cells. Elife. 9. PMID 32343230 DOI: 10.7554/Elife.55780 |
0.487 |
|
| 2020 |
Cruz-Becerra G, Kadonaga JT. Author response: Enhancement of homology-directed repair with chromatin donor templates in cells Elife. DOI: 10.7554/Elife.55780.Sa2 |
0.372 |
|
| 2019 |
Chavez C, Cruz-Becerra G, Fei J, Kassavetis GA, Kadonaga JT. The tardigrade damage suppressor protein binds to nucleosomes and protects DNA from hydroxyl radicals. Elife. 8. PMID 31571581 DOI: 10.7554/Elife.47682 |
0.688 |
|
| 2019 |
Kadonaga JT. The transformation of the DNA template in RNA polymerase II transcription: a historical perspective. Nature Structural & Molecular Biology. PMID 31439939 DOI: 10.1038/S41594-019-0278-Y |
0.494 |
|
| 2019 |
Vo Ngoc L, Kassavetis GA, Kadonaga JT. The RNA Polymerase II Core Promoter in . Genetics. 212: 13-24. PMID 31053615 DOI: 10.1534/Genetics.119.302021 |
0.538 |
|
| 2019 |
Shir-Shapira H, Sloutskin A, Adato O, Ovadia-Shochat A, Ideses D, Zehavi Y, Kassavetis G, Kadonaga JT, Unger R, Juven-Gershon T. Identification of evolutionarily conserved downstream core promoter elements required for the transcriptional regulation of Fushi tarazu target genes. Plos One. 14: e0215695. PMID 30998799 DOI: 10.1371/Journal.Pone.0215695 |
0.546 |
|
| 2019 |
Wang W, Xu J, Limbo O, Fei J, Kassavetis GA, Chong J, Kadonaga JT, Russell P, Li B, Wang D. Molecular basis of chromatin remodeling by Rhp26, a yeast CSB ortholog. Proceedings of the National Academy of Sciences of the United States of America. PMID 30867290 DOI: 10.1073/Pnas.1818163116 |
0.77 |
|
| 2019 |
Chavez C, Cruz-Becerra G, Fei J, Kassavetis GA, Kadonaga JT. Author response: The tardigrade damage suppressor protein binds to nucleosomes and protects DNA from hydroxyl radicals Elife. DOI: 10.7554/Elife.47682.014 |
0.669 |
|
| 2018 |
Fei J, Ishii H, Hoeksema MA, Meitinger F, Kassavetis GA, Glass CK, Ren B, Kadonaga JT. NDF, a nucleosome destabilizing factor that facilitates transcription through nucleosomes. Genes & Development. PMID 29759984 DOI: 10.1101/Gad.313973.118 |
0.742 |
|
| 2017 |
Khuong MT, Fei J, Cruz-Becerra G, Kadonaga JT. A simple and versatile system for the ATP-dependent assembly of chromatin. The Journal of Biological Chemistry. PMID 28982979 DOI: 10.1074/Jbc.M117.815365 |
0.775 |
|
| 2017 |
Vo Ngoc L, Wang YL, Kassavetis GA, Kadonaga JT. The punctilious RNA polymerase II core promoter. Genes & Development. 31: 1289-1301. PMID 28808065 DOI: 10.1101/Gad.303149.117 |
0.586 |
|
| 2017 |
Vo Ngoc L, Cassidy CJ, Huang CY, Duttke SH, Kadonaga JT. The human initiator is a distinct and abundant element that is precisely positioned in focused core promoters. Genes & Development. PMID 28108474 DOI: 10.1101/Gad.293837.116 |
0.514 |
|
| 2016 |
Khuong MT, Fei J, Ishii H, Kadonaga JT. Prenucleosomes and Active Chromatin. Cold Spring Harbor Symposia On Quantitative Biology. PMID 26767995 DOI: 10.1101/Sqb.2015.80.027300 |
0.77 |
|
| 2015 |
Fei J, Torigoe SE, Brown CR, Khuong MT, Kassavetis GA, Boeger H, Kadonaga JT. The prenucleosome, a stable conformational isomer of the nucleosome. Genes & Development. 29: 2563-75. PMID 26680301 DOI: 10.1101/Gad.272633.115 |
0.82 |
|
| 2015 |
Ishii H, Kadonaga JT, Ren B. MPE-seq, a new method for the genome-wide analysis of chromatin structure. Proceedings of the National Academy of Sciences of the United States of America. 112: E3457-65. PMID 26080409 DOI: 10.1073/Pnas.1424804112 |
0.55 |
|
| 2015 |
Duttke SH, Lacadie SA, Ibrahim MM, Glass CK, Corcoran DL, Benner C, Heinz S, Kadonaga JT, Ohler U. Human promoters are intrinsically directional. Molecular Cell. 57: 674-84. PMID 25639469 DOI: 10.1016/J.Molcel.2014.12.029 |
0.55 |
|
| 2014 |
Wang L, Limbo O, Fei J, Chen L, Kim B, Luo J, Chong J, Conaway RC, Conaway JW, Ranish JA, Kadonaga JT, Russell P, Wang D. Regulation of the Rhp26ERCC6/CSB chromatin remodeler by a novel conserved leucine latch motif. Proceedings of the National Academy of Sciences of the United States of America. 111: 18566-71. PMID 25512493 DOI: 10.1073/Pnas.1420227112 |
0.716 |
|
| 2014 |
Duttke SH, Doolittle RF, Wang YL, Kadonaga JT. TRF2 and the evolution of the bilateria. Genes & Development. 28: 2071-6. PMID 25274724 DOI: 10.1101/Gad.250563.114 |
0.469 |
|
| 2014 |
Wang YL, Duttke SH, Chen K, Johnston J, Kassavetis GA, Zeitlinger J, Kadonaga JT. TRF2, but not TBP, mediates the transcription of ribosomal protein genes. Genes & Development. 28: 1550-5. PMID 24958592 DOI: 10.1101/Gad.245662.114 |
0.538 |
|
| 2014 |
Kassavetis GA, Kadonaga JT. The annealing helicase and branch migration activities of Drosophila HARP. Plos One. 9: e98173. PMID 24866343 DOI: 10.1371/Journal.Pone.0098173 |
0.421 |
|
| 2013 |
Torigoe SE, Patel A, Khuong MT, Bowman GD, Kadonaga JT. ATP-dependent chromatin assembly is functionally distinct from chromatin remodeling. Elife. 2: e00863. PMID 23986862 DOI: 10.7554/Elife.00863 |
0.814 |
|
| 2013 |
Theisen JW, Gucwa JS, Yusufzai T, Khuong MT, Kadonaga JT. Biochemical analysis of histone deacetylase-independent transcriptional repression by MeCP2. The Journal of Biological Chemistry. 288: 7096-104. PMID 23349465 DOI: 10.1074/Jbc.M112.438697 |
0.843 |
|
| 2013 |
Cianfrocco MA, Kassavetis GA, Grob P, Fang J, Juven-Gershon T, Kadonaga JT, Nogales E. Human TFIID binds to core promoter DNA in a reorganized structural state. Cell. 152: 120-31. PMID 23332750 DOI: 10.1016/J.Cell.2012.12.005 |
0.506 |
|
| 2013 |
Torigoe SE, Patel A, Khuong MT, Bowman GD, Kadonaga JT. Author response: ATP-dependent chromatin assembly is functionally distinct from chromatin remodeling Elife. DOI: 10.7554/Elife.00863.013 |
0.809 |
|
| 2012 |
Kadonaga JT. Perspectives on the RNA polymerase II core promoter. Wiley Interdisciplinary Reviews. Developmental Biology. 1: 40-51. PMID 23801666 DOI: 10.1002/Wdev.21 |
0.59 |
|
| 2011 |
Torigoe SE, Urwin DL, Ishii H, Smith DE, Kadonaga JT. Identification of a rapidly formed nonnucleosomal histone-DNA intermediate that is converted into chromatin by ACF. Molecular Cell. 43: 638-48. PMID 21855802 DOI: 10.1016/J.Molcel.2011.07.017 |
0.834 |
|
| 2011 |
Yusufzai T, Kadonaga JT. Branching out with DNA helicases. Current Opinion in Genetics & Development. 21: 214-8. PMID 21324673 DOI: 10.1016/J.Gde.2011.01.019 |
0.408 |
|
| 2011 |
De Vlaminck I, Yusufzai T, van Loenhout MT, Vidic I, Kanaar R, Lebbink JH, Kadonaga JT, Dekker C. Annealing Helicase HARP: A Single Molecule Study Biophysical Journal. 100: 240a. DOI: 10.1016/J.Bpj.2010.12.1529 |
0.391 |
|
| 2010 |
Yusufzai T, Kadonaga JT. Annealing helicase 2 (AH2), a DNA-rewinding motor with an HNH motif. Proceedings of the National Academy of Sciences of the United States of America. 107: 20970-3. PMID 21078962 DOI: 10.1073/Pnas.1011196107 |
0.465 |
|
| 2010 |
Parry TJ, Theisen JW, Hsu JY, Wang YL, Corcoran DL, Eustice M, Ohler U, Kadonaga JT. The TCT motif, a key component of an RNA polymerase II transcription system for the translational machinery. Genes & Development. 24: 2013-8. PMID 20801935 DOI: 10.1101/Gad.1951110 |
0.825 |
|
| 2010 |
Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K. Evidence against a genomic code for nucleosome positioning. Reply to "Nucleosome sequence preferences influence in vivo nucleosome organization.". Nature Structural & Molecular Biology. 17: 920-3. PMID 20683474 DOI: 10.1038/Nsmb0810-920 |
0.367 |
|
| 2010 |
Theisen JW, Lim CY, Kadonaga JT. Three key subregions contribute to the function of the downstream RNA polymerase II core promoter. Molecular and Cellular Biology. 30: 3471-9. PMID 20457814 DOI: 10.1128/Mcb.00053-10 |
0.825 |
|
| 2010 |
Juven-Gershon T, Kadonaga JT. Regulation of gene expression via the core promoter and the basal transcriptional machinery. Developmental Biology. 339: 225-9. PMID 19682982 DOI: 10.1016/J.Ydbio.2009.08.009 |
0.512 |
|
| 2009 |
Yusufzai T, Kong X, Yokomori K, Kadonaga JT. The annealing helicase HARP is recruited to DNA repair sites via an interaction with RPA. Genes & Development. 23: 2400-4. PMID 19793863 DOI: 10.1101/Gad.1831509 |
0.436 |
|
| 2009 |
Zhang Y, Moqtaderi Z, Rattner BP, Euskirchen G, Snyder M, Kadonaga JT, Liu XS, Struhl K. Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo. Nature Structural & Molecular Biology. 16: 847-52. PMID 19620965 DOI: 10.1038/Nsmb.1636 |
0.584 |
|
| 2009 |
Rattner BP, Yusufzai T, Kadonaga JT. HMGN proteins act in opposition to ATP-dependent chromatin remodeling factors to restrict nucleosome mobility. Molecular Cell. 34: 620-6. PMID 19524541 DOI: 10.1016/J.Molcel.2009.04.014 |
0.535 |
|
| 2008 |
Yusufzai T, Kadonaga JT. HARP is an ATP-driven annealing helicase. Science (New York, N.Y.). 322: 748-50. PMID 18974355 DOI: 10.1126/Science.1161233 |
0.464 |
|
| 2008 |
Juven-Gershon T, Hsu JY, Kadonaga JT. Caudal, a key developmental regulator, is a DPE-specific transcriptional factor. Genes & Development. 22: 2823-30. PMID 18923080 DOI: 10.1101/Gad.1698108 |
0.534 |
|
| 2008 |
Hsu JY, Juven-Gershon T, Marr MT, Wright KJ, Tjian R, Kadonaga JT. TBP, Mot1, and NC2 establish a regulatory circuit that controls DPE-dependent versus TATA-dependent transcription. Genes & Development. 22: 2353-8. PMID 18703680 DOI: 10.1101/Gad.1681808 |
0.738 |
|
| 2008 |
Pfeiffer BD, Jenett A, Hammonds AS, Ngo TT, Misra S, Murphy C, Scully A, Carlson JW, Wan KH, Laverty TR, Mungall C, Svirskas R, Kadonaga JT, Doe CQ, Eisen MB, et al. Tools for neuroanatomy and neurogenetics in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 105: 9715-20. PMID 18621688 DOI: 10.1073/Pnas.0803697105 |
0.302 |
|
| 2008 |
Juven-Gershon T, Hsu JY, Theisen JW, Kadonaga JT. The RNA polymerase II core promoter - the gateway to transcription. Current Opinion in Cell Biology. 20: 253-9. PMID 18436437 DOI: 10.1016/J.Ceb.2008.03.003 |
0.831 |
|
| 2007 |
Konev AY, Tribus M, Park SY, Podhraski V, Lim CY, Emelyanov AV, Vershilova E, Pirrotta V, Kadonaga JT, Lusser A, Fyodorov DV. CHD1 motor protein is required for deposition of histone variant H3.3 into chromatin in vivo. Science (New York, N.Y.). 317: 1087-90. PMID 17717186 DOI: 10.1126/Science.1145339 |
0.824 |
|
| 2006 |
Juven-Gershon T, Cheng S, Kadonaga JT. Rational design of a super core promoter that enhances gene expression. Nature Methods. 3: 917-22. PMID 17124735 DOI: 10.1038/Nmeth937 |
0.556 |
|
| 2006 |
Juven-Gershon T, Hsu JY, Kadonaga JT. Perspectives on the RNA polymerase II core promoter. Biochemical Society Transactions. 34: 1047-50. PMID 17073747 DOI: 10.1042/Bst0341047 |
0.548 |
|
| 2006 |
Santoso B, Kadonaga JT. Reconstitution of chromatin transcription with purified components reveals a chromatin-specific repressive activity of p300. Nature Structural & Molecular Biology. 13: 131-9. PMID 16415879 DOI: 10.1038/Nsmb1048 |
0.765 |
|
| 2005 |
Lebedeva LA, Nabirochkina EN, Kurshakova MM, Robert F, Krasnov AN, Evgen'ev MB, Kadonaga JT, Georgieva SG, Tora L. Occupancy of the Drosophila hsp70 promoter by a subset of basal transcription factors diminishes upon transcriptional activation. Proceedings of the National Academy of Sciences of the United States of America. 102: 18087-92. PMID 16330756 DOI: 10.1073/Pnas.0509063102 |
0.453 |
|
| 2005 |
Gemmen GJ, Sim R, Haushalter KA, Ke PC, Kadonaga JT, Smith DE. Forced unraveling of nucleosomes assembled on heterogeneous DNA using core histones, NAP-1, and ACF. Journal of Molecular Biology. 351: 89-99. PMID 16002089 DOI: 10.1016/J.Jmb.2005.05.058 |
0.54 |
|
| 2005 |
Lusser A, Urwin DL, Kadonaga JT. Distinct activities of CHD1 and ACF in ATP-dependent chromatin assembly. Nature Structural & Molecular Biology. 12: 160-6. PMID 15643425 DOI: 10.1038/Nsmb884 |
0.796 |
|
| 2004 |
Lusser A, Kadonaga JT. Strategies for the reconstitution of chromatin. Nature Methods. 1: 19-26. PMID 15789029 DOI: 10.1038/Nmeth709 |
0.769 |
|
| 2004 |
Lim CY, Santoso B, Boulay T, Dong E, Ohler U, Kadonaga JT. The MTE, a new core promoter element for transcription by RNA polymerase II. Genes & Development. 18: 1606-17. PMID 15231738 DOI: 10.1101/Gad.1193404 |
0.819 |
|
| 2004 |
Alexiadis V, Lusser A, Kadonaga JT. A conserved N-terminal motif in Rad54 is important for chromatin remodeling and homologous strand pairing. The Journal of Biological Chemistry. 279: 27824-9. PMID 15105430 DOI: 10.1074/Jbc.M402648200 |
0.736 |
|
| 2004 |
Fyodorov DV, Blower MD, Karpen GH, Kadonaga JT. Acf1 confers unique activities to ACF/CHRAC and promotes the formation rather than disruption of chromatin in vivo. Genes & Development. 18: 170-83. PMID 14752009 DOI: 10.1101/Gad.1139604 |
0.823 |
|
| 2004 |
Kadonaga JT. Regulation of RNA polymerase II transcription by sequence-specific DNA binding factors. Cell. 116: 247-57. PMID 14744435 DOI: 10.1016/S0092-8674(03)01078-X |
0.536 |
|
| 2003 |
Fyodorov DV, Kadonaga JT. Chromatin assembly in vitro with purified recombinant ACF and NAP-1. Methods in Enzymology. 371: 499-515. PMID 14712724 DOI: 10.1016/S0076-6879(03)71037-4 |
0.818 |
|
| 2003 |
Lusser A, Kadonaga JT. Chromatin remodeling by ATP-dependent molecular machines. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 25: 1192-200. PMID 14635254 DOI: 10.1002/Bies.10359 |
0.791 |
|
| 2003 |
Haushalter KA, Kadonaga JT. Chromatin assembly by DNA-translocating motors. Nature Reviews. Molecular Cell Biology. 4: 613-20. PMID 12923523 DOI: 10.1038/Nrm1177 |
0.574 |
|
| 2003 |
Smale ST, Kadonaga JT. The RNA polymerase II core promoter. Annual Review of Biochemistry. 72: 449-79. PMID 12651739 DOI: 10.1146/Annurev.Biochem.72.121801.161520 |
0.706 |
|
| 2003 |
Parsons XH, Garcia SN, Pillus L, Kadonaga JT. Histone deacetylation by Sir2 generates a transcriptionally repressed nucleoprotein complex. Proceedings of the National Academy of Sciences of the United States of America. 100: 1609-14. PMID 12571358 DOI: 10.1073/Pnas.0434064100 |
0.627 |
|
| 2002 |
Kadonaga JT. The DPE, a core promoter element for transcription by RNA polymerase II. Experimental & Molecular Medicine. 34: 259-64. PMID 12515390 DOI: 10.1038/Emm.2002.36 |
0.55 |
|
| 2002 |
Alexiadis V, Kadonaga JT. Strand pairing by Rad54 and Rad51 is enhanced by chromatin. Genes & Development. 16: 2767-71. PMID 12414729 DOI: 10.1101/Gad.1032102 |
0.556 |
|
| 2002 |
Butler JE, Kadonaga JT. The RNA polymerase II core promoter: a key component in the regulation of gene expression. Genes & Development. 16: 2583-92. PMID 12381658 DOI: 10.1101/Gad.1026202 |
0.371 |
|
| 2002 |
Fyodorov DV, Kadonaga JT. Dynamics of ATP-dependent chromatin assembly by ACF. Nature. 418: 897-900. PMID 12192415 DOI: 10.1038/Nature00929 |
0.805 |
|
| 2002 |
Fyodorov DV, Kadonaga JT. Binding of Acf1 to DNA involves a WAC motif and is important for ACF-mediated chromatin assembly. Molecular and Cellular Biology. 22: 6344-53. PMID 12192034 DOI: 10.1128/Mcb.22.18.6344-6353.2002 |
0.812 |
|
| 2002 |
Levenstein ME, Kadonaga JT. Biochemical analysis of chromatin containing recombinant Drosophila core histones. The Journal of Biological Chemistry. 277: 8749-54. PMID 11773058 DOI: 10.1074/Jbc.M111212200 |
0.856 |
|
| 2001 |
Kerrigan LA, Kadonaga JT. Purification of sequence-specific DNA-binding proteins by affinity chromatography. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 9.6. PMID 18429215 DOI: 10.1002/0471140864.Ps0906S11 |
0.378 |
|
| 2001 |
Butler JE, Kadonaga JT. Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs. Genes & Development. 15: 2515-9. PMID 11581157 DOI: 10.1101/Gad.924301 |
0.52 |
|
| 2001 |
Fyodorov DV, Kadonaga JT. The many faces of chromatin remodeling: SWItching beyond transcription. Cell. 106: 523-5. PMID 11551498 DOI: 10.1016/S0092-8674(01)00478-0 |
0.81 |
|
| 2001 |
Tyler JK, Collins KA, Prasad-Sinha J, Amiott E, Bulger M, Harte PJ, Kobayashi R, Kadonaga JT. Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors. Molecular and Cellular Biology. 21: 6574-84. PMID 11533245 DOI: 10.1128/Mcb.21.19.6574-6584.2001 |
0.506 |
|
| 2001 |
Manning ET, Ikehara T, Ito T, Kadonaga JT, Kraus WL. p300 forms a stable, template-committed complex with chromatin: role for the bromodomain. Molecular and Cellular Biology. 21: 3876-87. PMID 11359896 DOI: 10.1128/Mcb.21.12.3876-3887.2001 |
0.568 |
|
| 2001 |
Huang X, Kadonaga JT. Biochemical analysis of transcriptional repression by Drosophila histone deacetylase 1. The Journal of Biological Chemistry. 276: 12497-500. PMID 11278256 DOI: 10.1074/Jbc.C100034200 |
0.64 |
|
| 2000 |
Willy PJ, Kobayashi R, Kadonaga JT. A basal transcription factor that activates or represses transcription. Science (New York, N.Y.). 290: 982-5. PMID 11062130 DOI: 10.1126/Science.290.5493.982 |
0.525 |
|
| 2000 |
Jiang W, Nordeen SK, Kadonaga JT. Transcriptional analysis of chromatin assembled with purified ACF and dNAP1 reveals that acetyl-CoA is required for preinitiation complex assembly. The Journal of Biological Chemistry. 275: 39819-22. PMID 11054407 DOI: 10.1074/Jbc.C000713200 |
0.638 |
|
| 2000 |
Jones KA, Kadonaga JT. Exploring the transcription-chromatin interface. Genes & Development. 14: 1992-6. PMID 10950863 |
0.435 |
|
| 2000 |
Kutach AK, Kadonaga JT. The downstream promoter element DPE appears to be as widely used as the TATA box in Drosophila core promoters. Molecular and Cellular Biology. 20: 4754-64. PMID 10848601 DOI: 10.1128/Mcb.20.13.4754-4764.2000 |
0.824 |
|
| 2000 |
Jones KA, Kadonaga JT. Exploring the transcription–chromatin interface Genes & Development. 14: 1992-1996. DOI: 10.1101/Gad.14.16.1992 |
0.602 |
|
| 1999 |
Tyler JK, Adams CR, Chen SR, Kobayashi R, Kamakaka RT, Kadonaga JT. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature. 402: 555-60. PMID 10591219 DOI: 10.1038/990147 |
0.558 |
|
| 1999 |
Tyler JK, Kadonaga JT. The "dark side" of chromatin remodeling: repressive effects on transcription. Cell. 99: 443-6. PMID 10589670 DOI: 10.1016/S0092-8674(00)81530-5 |
0.61 |
|
| 1999 |
Kraus WL, Manning ET, Kadonaga JT. Biochemical analysis of distinct activation functions in p300 that enhance transcription initiation with chromatin templates. Molecular and Cellular Biology. 19: 8123-35. PMID 10567538 DOI: 10.1128/Mcb.19.12.8123 |
0.444 |
|
| 1999 |
Ito T, Levenstein ME, Fyodorov DV, Kutach AK, Kobayashi R, Kadonaga JT. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly. Genes & Development. 13: 1529-39. PMID 10385622 DOI: 10.1101/Gad.13.12.1529 |
0.82 |
|
| 1999 |
Kadonaga JT, Grunstein M. Chromatin: The packaging is the message Current Opinion in Genetics and Development. 9: 129-131. DOI: 10.1016/S0959-437X(99)80019-7 |
0.51 |
|
| 1999 |
Ausio J, Pazin MJ, Bhargava P, Geiduschek EP, Kadonaga JT. Nucleosome mobility and the maintenance of nucleosome positioning Chemtracts. 12: 165-170. |
0.307 |
|
| 1998 |
Burke TW, Willy PJ, Kutach AK, Butler JE, Kadonaga JT. The DPE, a conserved downstream core promoter element that is functionally analogous to the TATA box. Cold Spring Harbor Symposia On Quantitative Biology. 63: 75-82. PMID 10384272 DOI: 10.1101/Sqb.1998.63.75 |
0.804 |
|
| 1998 |
Pazin MJ, Hermann JW, Kadonaga JT. Promoter structure and transcriptional activation with chromatin templates assembled in vitro. A single Gal4-VP16 dimer binds to chromatin or to DNA with comparable affinity. The Journal of Biological Chemistry. 273: 34653-60. PMID 9852139 DOI: 10.1074/Jbc.273.51.34653 |
0.622 |
|
| 1998 |
Ito T, Muramatsu M, Kadonaga JT. [Chromatin assembly and reconfiguration]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 43: 2087-93. PMID 9838850 |
0.391 |
|
| 1998 |
Näär AM, Beaurang PA, Robinson KM, Oliner JD, Avizonis D, Scheek S, Zwicker J, Kadonaga JT, Tjian R. Chromatin, TAFs, and a novel multiprotein coactivator are required for synergistic activation by Sp1 and SREBP-1a in vitro. Genes & Development. 12: 3020-31. PMID 9765204 DOI: 10.1101/Gad.12.19.3020 |
0.708 |
|
| 1998 |
Robinson KM, Kadonaga JT. The use of chromatin templates to recreate transcriptional regulatory phenomena in vitro. Biochimica Et Biophysica Acta. 1378: M1-6. PMID 9739762 DOI: 10.1016/S0304-419X(98)00008-0 |
0.552 |
|
| 1998 |
Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science (New York, N.Y.). 281: 60-3. PMID 9679020 DOI: 10.1126/Science.281.5373.60 |
0.498 |
|
| 1998 |
Kadonaga JT. Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines. Cell. 92: 307-13. PMID 9476891 DOI: 10.1016/S0092-8674(00)80924-1 |
0.486 |
|
| 1998 |
Kraus WL, Kadonaga JT. p300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation. Genes & Development. 12: 331-42. PMID 9450928 DOI: 10.1101/Gad.12.3.331 |
0.431 |
|
| 1997 |
Ito T, Tyler JK, Kadonaga JT. Chromatin assembly factors: a dual function in nucleosome formation and mobilization? Genes to Cells : Devoted to Molecular & Cellular Mechanisms. 2: 593-600. PMID 9427281 DOI: 10.1046/J.1365-2443.1997.1500348.X |
0.585 |
|
| 1997 |
Burke TW, Kadonaga JT. The downstream core promoter element, DPE, is conserved from Drosophila to humans and is recognized by TAFII60 of Drosophila. Genes & Development. 11: 3020-31. PMID 9367984 DOI: 10.1101/Gad.11.22.3020 |
0.539 |
|
| 1997 |
Ito T, Bulger M, Pazin MJ, Kobayashi R, Kadonaga JT. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell. 90: 145-55. PMID 9230310 DOI: 10.1016/S0092-8674(00)80321-9 |
0.591 |
|
| 1997 |
Ouhammouch M, Sayre MH, Kadonaga JT, Geiduschek EP. Activation of RNA polymerase II by topologically linked DNA-tracking proteins. Proceedings of the National Academy of Sciences of the United States of America. 94: 6718-23. PMID 9192631 DOI: 10.1073/pnas.94.13.6718 |
0.404 |
|
| 1997 |
Pazin MJ, Kadonaga JT. What's up and down with histone deacetylation and transcription? Cell. 89: 325-8. PMID 9150131 DOI: 10.1016/S0092-8674(00)80211-1 |
0.535 |
|
| 1997 |
Pazin MJ, Kadonaga JT. SWI2/SNF2 and related proteins: ATP-driven motors that disrupt protein-DNA interactions? Cell. 88: 737-40. PMID 9118215 DOI: 10.1016/S0092-8674(00)81918-2 |
0.549 |
|
| 1997 |
Pazin MJ, Bhargava P, Geiduschek EP, Kadonaga JT. Nucleosome mobility and the maintenance of nucleosome positioning. Science (New York, N.Y.). 276: 809-12. PMID 9115208 DOI: 10.1126/Science.276.5313.809 |
0.452 |
|
| 1996 |
Tyler JK, Bulger M, Kamakaka RT, Kobayashi R, Kadonaga JT. The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. Molecular and Cellular Biology. 16: 6149-59. PMID 8887645 DOI: 10.1128/Mcb.16.11.6149 |
0.759 |
|
| 1996 |
Ito T, Tyler JK, Bulger M, Kobayashi R, Kadonaga JT. ATP-facilitated chromatin assembly with a nucleoplasmin-like protein from Drosophila melanogaster. The Journal of Biological Chemistry. 271: 25041-8. PMID 8798787 DOI: 10.1074/Jbc.271.40.25041 |
0.589 |
|
| 1996 |
Ito T, Bulger M, Kobayashi R, Kadonaga JT. Drosophila NAP-1 is a core histone chaperone that functions in ATP-facilitated assembly of regularly spaced nucleosomal arrays. Molecular and Cellular Biology. 16: 3112-24. PMID 8649423 DOI: 10.1128/Mcb.16.6.3112 |
0.59 |
|
| 1996 |
Kamakaka RT, Bulger M, Kaufman PD, Stillman B, Kadonaga JT. Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1. Molecular and Cellular Biology. 16: 810-7. PMID 8622682 DOI: 10.1128/Mcb.16.3.810 |
0.76 |
|
| 1996 |
Burke TW, Kadonaga JT. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes & Development. 10: 711-24. PMID 8598298 DOI: 10.1101/Gad.10.6.711 |
0.495 |
|
| 1996 |
Pazin MJ, Sheridan PL, Cannon K, Cao Z, Keck JG, Kadonaga JT, Jones KA. NF-kappa B-mediated chromatin reconfiguration and transcriptional activation of the HIV-1 enhancer in vitro. Genes & Development. 10: 37-49. PMID 8557193 DOI: 10.1101/Gad.10.1.37 |
0.495 |
|
| 1995 |
Bulger M, Ito T, Kamakaka RT, Kadonaga JT. Assembly of regularly spaced nucleosome arrays by Drosophila chromatin assembly factor 1 and a 56-kDa histone-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 92: 11726-30. PMID 8524837 DOI: 10.1073/Pnas.92.25.11726 |
0.799 |
|
| 1995 |
Frank DJ, Tyree CM, George CP, Kadonaga JT. Structure and function of the small subunit of TFIIF (RAP30) from Drosophila melanogaster. The Journal of Biological Chemistry. 270: 6292-7. PMID 7890767 DOI: 10.1074/Jbc.270.11.6292 |
0.465 |
|
| 1995 |
Lira-DeVito LM, Burke TW, Kadonaga JT. Structure of the genes encoding transcription factor IIB and TATA box-binding protein from Drosophila melanogaster. Gene. 153: 203-7. PMID 7875589 DOI: 10.1016/0378-1119(94)00764-J |
0.49 |
|
| 1995 |
George CP, Lira-DeVito LM, Wampler SL, Kadonaga JT. A spectrum of mechanisms for the assembly of the RNA polymerase II transcription preinitiation complex. Molecular and Cellular Biology. 15: 1049-59. PMID 7823920 DOI: 10.1128/Mcb.15.2.1049 |
0.528 |
|
| 1995 |
Sheridan PL, Sheline CT, Cannon K, Voz ML, Pazin MJ, Kadonaga JT, Jones KA. Activation of the HIV-1 enhancer by the LEF-1 HMG protein on nucleosome-assembled DNA in vitro. Genes & Development. 9: 2090-104. PMID 7657162 DOI: 10.1101/Gad.9.17.2090 |
0.515 |
|
| 1995 |
Paranjape SM, Krumm A, Kadonaga JT. HMG17 is a chromatin-specific transcriptional coactivator that increases the efficiency of transcription initiation. Genes & Development. 9: 1978-91. PMID 7649479 DOI: 10.1101/Gad.9.16.1978 |
0.634 |
|
| 1994 |
Kamakaka RT, Kaufman PD, Stillman B, Mitsis PG, Kadonaga JT. Simian virus 40 origin- and T-antigen-dependent DNA replication with Drosophila factors in vitro. Molecular and Cellular Biology. 14: 5114-22. PMID 8035793 DOI: 10.1128/Mcb.14.8.5114 |
0.711 |
|
| 1994 |
Paranjape SM, Kamakaka RT, Kadonaga JT. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Annual Review of Biochemistry. 63: 265-97. PMID 7979240 DOI: 10.1146/annurev.bi.63.070194.001405 |
0.721 |
|
| 1994 |
Pazin MJ, Kamakaka RT, Kadonaga JT. ATP-dependent nucleosome reconfiguration and transcriptional activation from preassembled chromatin templates. Science (New York, N.Y.). 266: 2007-11. PMID 7801129 DOI: 10.1126/Science.7801129 |
0.805 |
|
| 1994 |
Kamakaka RT, Kadonaga JT. The soluble nuclear fraction, a highly efficient transcription extract from Drosophila embryos. Methods in Cell Biology. 44: 225-35. PMID 7707954 DOI: 10.1016/S0091-679X(08)60916-4 |
0.79 |
|
| 1993 |
Klucher KM, Sommer M, Kadonaga JT, Spector DH. In vivo and in vitro analysis of transcriptional activation mediated by the human cytomegalovirus major immediate-early proteins. Molecular and Cellular Biology. 13: 1238-50. PMID 8423789 DOI: 10.1128/Mcb.13.2.1238 |
0.486 |
|
| 1993 |
Kamakaka RT, Bulger M, Kadonaga JT. Potentiation of RNA polymerase II transcription by Gal4-VP16 during but not after DNA replication and chromatin assembly. Genes & Development. 7: 1779-95. PMID 8370526 DOI: 10.1101/Gad.7.9.1779 |
0.804 |
|
| 1993 |
Croston GE, Kadonaga JT. Role of chromatin structure in the regulation of transcription by RNA polymerase II. Current Opinion in Cell Biology. 5: 417-23. PMID 8352958 DOI: 10.1016/0955-0674(93)90006-C |
0.496 |
|
| 1993 |
Tyree CM, George CP, Lira-DeVito LM, Wampler SL, Dahmus ME, Zawel L, Kadonaga JT. Identification of a minimal set of proteins that is sufficient for accurate initiation of transcription by RNA polymerase II. Genes & Development. 7: 1254-65. PMID 8319911 DOI: 10.1101/Gad.7.7A.1254 |
0.47 |
|
| 1993 |
Kamakaka RT, Kadonaga JT. Biochemical analysis of the role of chromatin structure in the regulation of transcription by RNA polymerase II. Cold Spring Harbor Symposia On Quantitative Biology. 58: 205-12. PMID 7956031 DOI: 10.1101/Sqb.1993.058.01.025 |
0.741 |
|
| 1992 |
Wampler SL, Kadonaga JT. Functional analysis of Drosophila transcription factor IIB. Genes & Development. 6: 1542-52. PMID 1644295 DOI: 10.1101/Gad.6.8.1542 |
0.551 |
|
| 1992 |
Kerrigan LA, Kadonaga JT. Periodic binding of individual core histones to DNA: inadvertent purification of the core histone H2B as a putative enhancer-binding factor. Nucleic Acids Research. 20: 6673-80. PMID 1480489 DOI: 10.1093/Nar/20.24.6673 |
0.615 |
|
| 1992 |
Croston GE, Laybourn PJ, Paranjape SM, Kadonaga JT. Mechanism of transcriptional antirepression by GAL4-VP16. Genes & Development. 6: 2270-81. PMID 1459451 DOI: 10.1101/Gad.6.12A.2270 |
0.614 |
|
| 1992 |
Laybourn PJ, Kadonaga JT. Threshold phenomena and long-distance activation of transcription by RNA polymerase II. Science (New York, N.Y.). 257: 1682-5. PMID 1388287 DOI: 10.1126/Science.1388287 |
0.577 |
|
| 1991 |
Kamakaka RT, Tyree CM, Kadonaga JT. Accurate and efficient RNA polymerase II transcription with a soluble nuclear fraction derived from Drosophila embryos. Proceedings of the National Academy of Sciences of the United States of America. 88: 1024-8. PMID 1992453 DOI: 10.1073/Pnas.88.3.1024 |
0.746 |
|
| 1991 |
Kerrigan LA, Croston GE, Lira LM, Kadonaga JT. Sequence-specific transcriptional antirepression of the Drosophila Krüppel gene by the GAGA factor. The Journal of Biological Chemistry. 266: 574-82. PMID 1985916 |
0.414 |
|
| 1991 |
Croston GE, Kerrigan LA, Lira LM, Marshak DR, Kadonaga JT. Sequence-specific antirepression of histone H1-mediated inhibition of basal RNA polymerase II transcription. Science (New York, N.Y.). 251: 643-9. PMID 1899487 DOI: 10.1126/Science.1899487 |
0.54 |
|
| 1991 |
Croston GE, Lira LM, Kadonaga JT. A general method for purification of H1 histones that are active for repression of basal RNA polymerase II transcription. Protein Expression and Purification. 2: 162-9. PMID 1821786 DOI: 10.1016/1046-5928(91)90066-R |
0.466 |
|
| 1991 |
Kadonaga JT. Purification of sequence-specific binding proteins by DNA affinity chromatography. Methods in Enzymology. 208: 10-23. PMID 1779831 DOI: 10.1016/0076-6879(91)08004-2 |
0.384 |
|
| 1991 |
Laybourn PJ, Kadonaga JT. Role of nucleosomal cores and histone H1 in regulation of transcription by RNA polymerase II. Science (New York, N.Y.). 254: 238-45. PMID 1718039 DOI: 10.1126/Science.1718039 |
0.631 |
|
| 1990 |
Wampler SL, Tyree CM, Kadonaga JT. Fractionation of the general RNA polymerase II transcription factors from Drosophila embryos. The Journal of Biological Chemistry. 265: 21223-31. PMID 2250021 |
0.33 |
|
| 1990 |
Kadonaga JT. Gene transcription: basal and regulated transcription by RNA polymerase II. Current Opinion in Cell Biology. 2: 496-501. PMID 2198898 DOI: 10.1016/0955-0674(90)90133-Y |
0.464 |
|
| 1990 |
Kadonaga JT. Assembly and disassembly of the Drosophila RNA polymerase II complex during transcription. The Journal of Biological Chemistry. 265: 2624-31. PMID 1689291 |
0.378 |
|
| 1988 |
Kadonaga JT, Courey AJ, Ladika J, Tjian R. Distinct regions of Sp1 modulate DNA binding and transcriptional activation. Science (New York, N.Y.). 242: 1566-70. PMID 3059495 DOI: 10.1126/Science.3059495 |
0.814 |
|
| 1988 |
Kadonaga JT, Courey AJ, Ladika J, Tjian R. Distinct regions of Sp1 modulate DNA binding and transcriptional activation Science. 242: 1566-1570. |
0.705 |
|
| 1987 |
Kadonaga JT, Carner KR, Masiarz FR, Tjian R. Isolation of cDNA encoding transcription factor Sp1 and functional analysis of the DNA binding domain. Cell. 51: 1079-90. PMID 3319186 DOI: 10.1016/0092-8674(87)90594-0 |
0.707 |
|
| 1987 |
Jones KA, Kadonaga JT, Rosenfeld PJ, Kelly TJ, Tjian R. A cellular DNA-binding protein that activates eukaryotic transcription and DNA replication. Cell. 48: 79-89. PMID 3024847 DOI: 10.1016/0092-8674(87)90358-8 |
0.743 |
|
| 1986 |
Briggs MR, Kadonaga JT, Bell SP, Tjian R. Purification and biochemical characterization of the promoter-specific transcription factor, Sp1. Science (New York, N.Y.). 234: 47-52. PMID 3529394 DOI: 10.1126/Science.3529394 |
0.772 |
|
| 1986 |
Kadonaga JT, Tjian R. Affinity purification of sequence-specific DNA binding proteins. Proceedings of the National Academy of Sciences of the United States of America. 83: 5889-93. PMID 3461465 DOI: 10.1073/Pnas.83.16.5889 |
0.691 |
|
| 1986 |
Ishii S, Kadonaga JT, Tjian R, Brady JN, Merlino GT, Pastan I. Binding of the Sp1 transcription factor by the human Harvey ras1 proto-oncogene promoter. Science (New York, N.Y.). 232: 1410-3. PMID 3012774 DOI: 10.1126/Science.3012774 |
0.713 |
|
| 1986 |
Jones KA, Kadonaga JT, Luciw PA, Tjian R. Activation of the AIDS retrovirus promoter by the cellular transcription factor, Sp1. Science (New York, N.Y.). 232: 755-9. PMID 3008338 DOI: 10.1126/Science.3008338 |
0.721 |
|
| 1986 |
Kadonaga JT, Jones KA, Tjian R. Promoter-specific activation of RNA polymerase II transcription by Sp1 Trends in Biochemical Sciences. 11: 20-23. DOI: 10.1016/0968-0004(86)90226-4 |
0.713 |
|
| 1985 |
Kadonaga JT, Plückthun A, Knowles JR. Signal sequence mutants of beta-lactamase. The Journal of Biological Chemistry. 260: 16192-9. PMID 3905810 |
0.54 |
|
| 1985 |
Kadonaga JT, Knowles JR. A simple and efficient method for chemical mutagenesis of DNA. Nucleic Acids Research. 13: 1733-45. PMID 3889841 DOI: 10.1093/Nar/13.5.1733 |
0.565 |
|
| 1985 |
Gidoni D, Kadonaga JT, Barrera-Saldaña H, Takahashi K, Chambon P, Tjian R. Bidirectional SV40 transcription mediated by tandem Sp1 binding interactions. Science (New York, N.Y.). 230: 511-7. PMID 2996137 DOI: 10.1126/Science.2996137 |
0.696 |
|
| 1984 |
Frost JW, Bender JL, Kadonaga JT, Knowles JR. Dehydroquinate synthase from Escherichia coli: purification, cloning, and construction of overproducers of the enzyme. Biochemistry. 23: 4470-5. PMID 6386050 DOI: 10.1021/Bi00314A036 |
0.634 |
|
| 1984 |
Kadonaga JT, Gautier AE, Straus DR, Charles AD, Edge MD, Knowles JR. The role of the beta-lactamase signal sequence in the secretion of proteins by Escherichia coli. The Journal of Biological Chemistry. 259: 2149-54. PMID 6365904 |
0.435 |
|
| 1983 |
Kadonaga JT, Knowles JR. Role of mono- and divalent metal cations in the catalysis by yeast aldolase. Biochemistry. 22: 130-6. PMID 6338913 DOI: 10.1021/Bi00270A019 |
0.493 |
|
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