| Year |
Citation |
Score |
| 2024 |
Claramunt S, Braun EL, Cracraft J, Fjeldså J, Ho SYW, Houde P, Nguyen JMT, Stiller J. Calibrating the genomic clock of modern birds using fossils. Proceedings of the National Academy of Sciences of the United States of America. 121: e2405887121. PMID 39284060 DOI: 10.1073/pnas.2405887121 |
0.589 |
|
| 2024 |
Hogg CJ, Edwards RJ, Farquharson KA, Silver LW, Brandies P, Peel E, Escalona M, Jaya FR, Thavornkanlapachai R, Batley K, Bradford TM, Chang JK, Chen Z, Deshpande N, Dziminski M, ... ... Ho SYW, et al. Author Correction: Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature Ecology & Evolution. PMID 39075174 DOI: 10.1038/s41559-024-02519-0 |
0.636 |
|
| 2024 |
Hogg CJ, Edwards RJ, Farquharson KA, Silver LW, Brandies P, Peel E, Escalona M, Jaya FR, Thavornkanlapachai R, Batley K, Bradford TM, Chang JK, Chen Z, Deshpande N, Dziminski M, ... ... Ho SYW, et al. Extant and extinct bilby genomes combined with Indigenous knowledge improve conservation of a unique Australian marsupial. Nature Ecology & Evolution. PMID 38945974 DOI: 10.1038/s41559-024-02436-2 |
0.645 |
|
| 2024 |
Ewart KM, Ho SYW, Chowdhury AA, Jaya FR, Kinjo Y, Bennett J, Bourguignon T, Rose HA, Lo N. Pervasive relaxed selection in termite genomes. Proceedings. Biological Sciences. 291: 20232439. PMID 38772424 DOI: 10.1098/rspb.2023.2439 |
0.645 |
|
| 2024 |
Stiller J, Feng S, Chowdhury AA, Rivas-González I, Duchêne DA, Fang Q, Deng Y, Kozlov A, Stamatakis A, Claramunt S, Nguyen JMT, Ho SYW, Faircloth BC, Haag J, Houde P, et al. Complexity of avian evolution revealed by family-level genomes. Nature. PMID 38560995 DOI: 10.1038/s41586-024-07323-1 |
0.49 |
|
| 2024 |
Duchêne DA, Duchêne S, Stiller J, Heller R, Ho SYW. ClockstaRX: Testing molecular clock hypotheses with genomic data. Genome Biology and Evolution. PMID 38526019 DOI: 10.1093/gbe/evae064 |
0.339 |
|
| 2024 |
Tea YK, Zhou Y, Ewart KM, Cheng G, Kawasaki K, DiBattista JD, Ho SYW, Lo N, Fan S. The spotted parrotfish genome provides insights into the evolution of a coral reef dietary specialist (Teleostei: Labridae: Scarini: ). Ecology and Evolution. 14: e11148. PMID 38476702 DOI: 10.1002/ece3.11148 |
0.522 |
|
| 2024 |
Beasley-Hall PG, Kinjo Y, Rose HA, Walker J, Foster CSP, Kovacs TGL, Bourguignon T, Ho SYW, Lo N. Shrinking in the dark: Parallel endosymbiont genome erosions are associated with repeated host transitions to an underground life. Insect Science. PMID 38462506 DOI: 10.1111/1744-7917.13339 |
0.383 |
|
| 2024 |
Kovacs TGL, Walker J, Hellemans S, Bourguignon T, Tatarnic NJ, McRae JM, Ho SYW, Lo N. Dating in the Dark: Elevated Substitution Rates in Cave Cockroaches (Blattodea: Nocticolidae) Have Negative Impacts on Molecular Date Estimates. Systematic Biology. PMID 38320290 DOI: 10.1093/sysbio/syae002 |
0.413 |
|
| 2023 |
Asar Y, Sauquet H, Ho SYW. Evaluating the Accuracy of Methods for Detecting Correlated Rates of Molecular and Morphological Evolution. Systematic Biology. PMID 37695237 DOI: 10.1093/sysbio/syad055 |
0.328 |
|
| 2022 |
Kawakubo S, Tomitaka Y, Tomimura K, Koga R, Matsuoka H, Uematsu S, Yamashita K, Ho SYW, Ohshima K. The recombinogenic history of turnip mosaic potyvirus reveals its introduction to Japan in the 19th century. Virus Evolution. 8: veac060. PMID 35903148 DOI: 10.1093/ve/veac060 |
0.444 |
|
| 2021 |
Duchêne DA, Mather N, Van Der Wal C, Ho SYW. Excluding loci with substitution saturation improves inferences from phylogenomic data. Systematic Biology. PMID 34508605 DOI: 10.1093/sysbio/syab075 |
0.329 |
|
| 2021 |
Larena M, McKenna J, Sanchez-Quinto F, Bernhardsson C, Ebeo C, Reyes R, Casel O, Huang JY, Hagada KP, Guilay D, Reyes J, Allian FP, Mori V, Azarcon LS, Manera A, ... ... Ho SYW, et al. Philippine Ayta possess the highest level of Denisovan ancestry in the world. Current Biology : Cb. PMID 34388371 DOI: 10.1016/j.cub.2021.07.022 |
0.341 |
|
| 2021 |
Kawakubo S, Gao F, Li S, Tan Z, Huang YK, Adkar-Purushothama CR, Gurikar C, Maneechoat P, Chiemsombat P, Aye SS, Furuya N, Shevchenko O, Špak J, Škorić D, Ho SYW, et al. Genomic analysis of the brassica pathogen turnip mosaic potyvirus reveals its spread along the former trade routes of the Silk Road. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33741737 DOI: 10.1073/pnas.2021221118 |
0.395 |
|
| 2020 |
Gao F, Kawakubo S, Ho SYW, Ohshima K. The evolutionary history and global spatio-temporal dynamics of potato virus Y. Virus Evolution. 6: veaa056. PMID 33324488 DOI: 10.1093/ve/veaa056 |
0.36 |
|
| 2020 |
Barnett R, Westbury MV, Sandoval-Velasco M, Vieira FG, Jeon S, Zazula G, Martin MD, Ho SYW, Mather N, Gopalakrishnan S, Ramos-Madrigal J, de Manuel M, Zepeda-Mendoza ML, Antunes A, Baez AC, et al. Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens. Current Biology : Cb. PMID 33065008 DOI: 10.1016/j.cub.2020.09.051 |
0.467 |
|
| 2020 |
Duchêne S, Ho SYW, Carmichael AG, Holmes EC, Poinar H. The Recovery, Interpretation and Use of Ancient Pathogen Genomes. Current Biology : Cb. 30: R1215-R1231. PMID 33022266 DOI: 10.1016/j.cub.2020.08.081 |
0.538 |
|
| 2020 |
Karpinski E, Hackenberger D, Zazula G, Widga C, Duggan AT, Golding GB, Kuch M, Klunk J, Jass CN, Groves P, Druckenmiller P, Schubert BW, Arroyo-Cabrales J, Simpson WF, Hoganson JW, ... ... Ho SYW, et al. American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations. Nature Communications. 11: 4048. PMID 32873779 DOI: 10.1038/S41467-020-17893-Z |
0.346 |
|
| 2020 |
Bourguignon T, Kinjo Y, Villa-Martín P, Coleman NV, Tang Q, Arab DA, Wang Z, Tokuda G, Hongoh Y, Ohkuma M, Ho SYW, Pigolotti S, Lo N. Increased Mutation Rate Is Linked to Genome Reduction in Prokaryotes. Current Biology : Cb. PMID 32763167 DOI: 10.1016/J.Cub.2020.07.034 |
0.556 |
|
| 2020 |
Ewart KM, Lo N, Ogden R, Joseph L, Ho SYW, Frankham GJ, Eldridge MDB, Schodde R, Johnson RN. Phylogeography of the iconic Australian red-tailed black-cockatoo (Calyptorhynchus banksii) and implications for its conservation. Heredity. PMID 32398870 DOI: 10.1038/S41437-020-0315-Y |
0.48 |
|
| 2020 |
Mather N, Traves SM, Ho SYW. A practical introduction to sequentially Markovian coalescent methods for estimating demographic history from genomic data. Ecology and Evolution. 10: 579-589. PMID 31988743 DOI: 10.1002/ece3.5888 |
0.492 |
|
| 2020 |
Arab DA, Bourguignon T, Wang Z, Ho SYW, Lo N. Evolutionary rates are correlated between cockroach symbionts and mitochondrial genomes. Biology Letters. 16: 20190702. PMID 31910734 DOI: 10.1098/Rsbl.2019.0702 |
0.462 |
|
| 2019 |
Zhang L, Chen F, Zhang X, Li Z, Zhao Y, Lohaus R, Chang X, Dong W, Ho SYW, Liu X, Song A, Chen J, Guo W, Wang Z, Zhuang Y, et al. The water lily genome and the early evolution of flowering plants. Nature. PMID 31853069 DOI: 10.1038/S41586-019-1852-5 |
0.508 |
|
| 2019 |
Thomas JE, Carvalho GR, Haile J, Rawlence NJ, Martin MD, Ho SY, Sigfússon AÞ, Jósefsson VA, Frederiksen M, Linnebjerg JF, Samaniego Castruita JA, Niemann J, Sinding MS, Sandoval-Velasco M, Soares AE, et al. Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. Elife. 8. PMID 31767056 DOI: 10.7554/Elife.47509 |
0.339 |
|
| 2019 |
Tea YK, Van Der Wal C, Ludt WB, Gill AC, Lo N, Ho SYW. Boomeranging around Australia: Historical biogeography and population genomics of the anti-equatorial fish Microcanthus strigatus (Teleostei: Microcanthidae). Molecular Ecology. PMID 31291490 DOI: 10.1111/Mec.15172 |
0.358 |
|
| 2018 |
Luo A, Ho SYW. The molecular clock and evolutionary timescales. Biochemical Society Transactions. PMID 30154097 DOI: 10.1042/BST20180186 |
0.416 |
|
| 2018 |
Zhou Z, Lundstrøm I, Tran-Dien A, Duchêne S, Alikhan NF, Sergeant MJ, Langridge G, Fotakis AK, Nair S, Stenøien HK, Hamre SS, Casjens S, Christophersen A, Quince C, Thomson NR, ... ... Ho SYW, et al. Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. Current Biology : Cb. PMID 30033331 DOI: 10.1016/J.Cub.2018.05.058 |
0.371 |
|
| 2018 |
Johnson RN, O'Meally D, Chen Z, Etherington GJ, Ho SYW, Nash WJ, Grueber CE, Cheng Y, Whittington CM, Dennison S, Peel E, Haerty W, O'Neill RJ, Colgan D, Russell TL, et al. Adaptation and conservation insights from the koala genome. Nature Genetics. PMID 29967444 DOI: 10.1038/S41588-018-0153-5 |
0.499 |
|
| 2018 |
Foster CSP, Henwood MJ, Ho SYW. Plastome sequences and exploration of tree-space help to resolve the phylogeny of riceflowers (Thymelaeaceae: Pimelea). Molecular Phylogenetics and Evolution. PMID 29803950 DOI: 10.1016/j.ympev.2018.05.018 |
0.306 |
|
| 2018 |
Hudjashov G, Endicott P, Post H, Nagle N, Ho SYW, Lawson DJ, Reidla M, Karmin M, Rootsi S, Metspalu E, Saag L, Villems R, Cox MP, Mitchell RJ, Garcia-Bertrand RL, et al. Investigating the origins of eastern Polynesians using genome-wide data from the Leeward Society Isles. Scientific Reports. 8: 1823. PMID 29379068 DOI: 10.1038/S41598-018-20026-8 |
0.463 |
|
| 2017 |
Lee C, Moroldo M, Perdomo-Sabogal A, Mach N, Marthey S, Lecardonnel J, Wahlberg P, Chong AY, Estellé J, Ho SYW, Rogel-Gaillard C, Gongora J. Inferring the evolution of the major histocompatibility complex of wild pigs and peccaries using hybridisation DNA capture-based sequencing. Immunogenetics. PMID 29256177 DOI: 10.1007/s00251-017-1048-9 |
0.399 |
|
| 2017 |
Foster CSP, Ho SYW. Strategies for Partitioning Clock Models in Phylogenomic Dating: Application to the Angiosperm Evolutionary Timescale. Genome Biology and Evolution. PMID 29036288 DOI: 10.1093/gbe/evx198 |
0.305 |
|
| 2017 |
Yasaka R, Fukagawa H, Ikematsu M, Soda H, Korkmaz S, Golnaraghi A, Katis N, Ho SYW, Gibbs AJ, Ohshima K. The Timescale of Emergence and Spread of Turnip Mosaic Potyvirus. Scientific Reports. 7: 4240. PMID 28652582 DOI: 10.1038/s41598-017-01934-7 |
0.334 |
|
| 2017 |
Raven N, Lisovski S, Klaassen M, Lo N, Madsen T, Ho SYW, Ujvari B. Purifying selection and concerted evolution of RNA-sensing toll-like receptors in migratory waders. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 28528860 DOI: 10.1016/j.meegid.2017.05.012 |
0.301 |
|
| 2017 |
Tong KJ, Duchêne S, Lo N, Ho SYW. The impacts of drift and selection on genomic evolution in insects. Peerj. 5: e3241. PMID 28462044 DOI: 10.7717/peerj.3241 |
0.437 |
|
| 2017 |
Duchêne DA, Duchêne S, Ho SY. New Statistical Criteria Detect Phylogenetic Bias Caused by Compositional Heterogeneity. Molecular Biology and Evolution. PMID 28333201 DOI: 10.1093/molbev/msx092 |
0.303 |
|
| 2016 |
Soubrier J, Gower G, Chen K, Richards SM, Llamas B, Mitchell KJ, Ho SY, Kosintsev P, Lee MS, Baryshnikov G, Bollongino R, Bover P, Burger J, Chivall D, Crégut-Bonnoure E, et al. Early cave art and ancient DNA record the origin of European bison. Nature Communications. 7: 13158. PMID 27754477 DOI: 10.1038/Ncomms13158 |
0.464 |
|
| 2016 |
Foster CS, Sauquet H, van der Merwe M, McPherson H, Rossetto M, Ho SY. Evaluating the Impact of Genomic Data and Priors on Bayesian Estimates of the Angiosperm Evolutionary Timescale. Systematic Biology. PMID 27650175 DOI: 10.1093/sysbio/syw086 |
0.431 |
|
| 2016 |
Ho SY, Chen AX, Lins LS, Duchêne DA, Lo N. The Genome as an Evolutionary Timepiece. Genome Biology and Evolution. PMID 27604881 DOI: 10.1093/gbe/evw220 |
0.441 |
|
| 2016 |
Llamas B, Fehren-Schmitz L, Valverde G, Soubrier J, Mallick S, Rohland N, Nordenfelt S, Valdiosera C, Richards SM, Rohrlach A, Romero MI, Espinoza IF, Cagigao ET, Jiménez LW, Makowski K, ... ... Ho SY, et al. Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas. Science Advances. 2: e1501385. PMID 27051878 DOI: 10.1126/Sciadv.1501385 |
0.313 |
|
| 2015 |
Martin MD, Vieira FG, Ho SY, Wales N, Schubert M, Seguin-Orlando A, Ristaino JB, Gilbert MT. Genomic characterization of a South American Phytophthora hybrid mandates reassessment of the geographic origins of Phytophthora infestans. Molecular Biology and Evolution. PMID 26576850 DOI: 10.1093/Molbev/Msv241 |
0.339 |
|
| 2015 |
Ohshima K, Matsumoto K, Yasaka R, Nishiyama M, Soejima K, Korkmaz S, Ho SY, Gibbs AJ, Takeshita M. Temporal analysis of reassortment and molecular evolution of Cucumber mosaic virus: Extra clues from its segmented genome. Virology. 487: 188-197. PMID 26539800 DOI: 10.1016/j.virol.2015.09.024 |
0.41 |
|
| 2015 |
Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED. Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds". Science (New York, N.Y.). 349: 1460. PMID 26404820 DOI: 10.1126/Science.Aab1578 |
0.306 |
|
| 2015 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, et al. Phylogenomic analyses data of the avian phylogenomics project. Gigascience. 4: 4. PMID 25741440 DOI: 10.1186/S13742-014-0038-1 |
0.588 |
|
| 2015 |
Duchêne S, Ho SY. Mammalian genome evolution is governed by multiple pacemakers. Bioinformatics (Oxford, England). 31: 2061-5. PMID 25725495 DOI: 10.1093/bioinformatics/btv121 |
0.572 |
|
| 2015 |
Yasaka R, Ohba K, Schwinghamer MW, Fletcher J, Ochoa-Corona FM, Thomas JE, Ho SY, Gibbs AJ, Ohshima K. Phylodynamic evidence of the migration of turnip mosaic potyvirus from Europe to Australia and New Zealand. The Journal of General Virology. 96: 701-13. PMID 25481753 DOI: 10.1099/Jgv.0.000007 |
0.38 |
|
| 2014 |
Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Ho SY, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27 |
0.515 |
|
| 2014 |
Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, et al. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science (New York, N.Y.). 346: 1320-31. PMID 25504713 DOI: 10.1126/Science.1253451 |
0.539 |
|
| 2014 |
Jaratlerdsiri W, Isberg SR, Higgins DP, Ho SY, Salomonsen J, Skjodt K, Miles LG, Gongora J. Evolution of MHC class I in the order Crocodylia. Immunogenetics. 66: 53-65. PMID 24253731 DOI: 10.1007/s00251-013-0746-1 |
0.356 |
|
| 2013 |
Langford S SM, Kraitsek S, Baskerville B, Ho SY, Gongora J. Australian and Pacific contributions to the genetic diversity of Norfolk Island feral chickens. Bmc Genetics. 14: 91. PMID 24063717 DOI: 10.1186/1471-2156-14-91 |
0.328 |
|
| 2013 |
Martínková N, Barnett R, Cucchi T, Struchen R, Pascal M, Pascal M, Fischer MC, Higham T, Brace S, Ho SY, Quéré JP, O'Higgins P, Excoffier L, Heckel G, Hoelzel AR, et al. Divergent evolutionary processes associated with colonization of offshore islands. Molecular Ecology. 22: 5205-20. PMID 23998800 DOI: 10.1111/Mec.12462 |
0.302 |
|
| 2013 |
Martin MD, Cappellini E, Samaniego JA, Zepeda ML, Campos PF, Seguin-Orlando A, Wales N, Orlando L, Ho SY, Dietrich FS, Mieczkowski PA, Heitman J, Willerslev E, Krogh A, Ristaino JB, et al. Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nature Communications. 4: 2172. PMID 23863894 DOI: 10.1038/Ncomms3172 |
0.408 |
|
| 2013 |
Zhao Z, Su TJ, Chesters D, Wang SD, Ho SY, Zhu CD, Chen XL, Zhang CT. The mitochondrial genome of Elodia flavipalpis Aldrich (Diptera: Tachinidae) and the evolutionary timescale of Tachinid flies. Plos One. 8: e61814. PMID 23626734 DOI: 10.1371/Journal.Pone.0061814 |
0.467 |
|
| 2013 |
Brotherton P, Haak W, Templeton J, Brandt G, Soubrier J, Jane Adler C, Richards SM, Sarkissian CD, Ganslmeier R, Friederich S, Dresely V, van Oven M, Kenyon R, Van der Hoek MB, Korlach J, ... ... Ho SY, et al. Neolithic mitochondrial haplogroup H genomes and the genetic origins of Europeans. Nature Communications. 4: 1764. PMID 23612305 DOI: 10.1038/Ncomms2656 |
0.365 |
|
| 2013 |
Ãvila-Arcos MC, Ho SY, Ishida Y, Nikolaidis N, Tsangaras K, Hönig K, Medina R, Rasmussen M, Fordyce SL, Calvignac-Spencer S, Willerslev E, Gilbert MT, Helgen KM, Roca AL, Greenwood AD. One hundred twenty years of koala retrovirus evolution determined from museum skins. Molecular Biology and Evolution. 30: 299-304. PMID 22983950 DOI: 10.1093/Molbev/Mst015 |
0.313 |
|
| 2012 |
Thornhill AH, Popple LW, Carter RJ, Ho SY, Crisp MD. Are pollen fossils useful for calibrating relaxed molecular clock dating of phylogenies? A comparative study using Myrtaceae. Molecular Phylogenetics and Evolution. 63: 15-27. PMID 22197806 DOI: 10.1016/j.ympev.2011.12.003 |
0.303 |
|
| 2010 |
Endicott P, Ho SYW, Stringer C. Using genetic evidence to evaluate four palaeoanthropological hypotheses for the timing of Neanderthal and modern human origins Journal of Human Evolution. 59: 87-95. PMID 20510437 DOI: 10.1016/j.jhevol.2010.04.005 |
0.358 |
|
| 2009 |
Ho SY, Gilbert MT. Ancient mitogenomics. Mitochondrion. 10: 1-11. PMID 19788938 DOI: 10.1016/j.mito.2009.09.005 |
0.357 |
|
| 2009 |
Willerslev E, Gilbert MT, Binladen J, Ho SY, Campos PF, Ratan A, Tomsho LP, da Fonseca RR, Sher A, Kuznetsova TV, Nowak-Kemp M, Roth TL, Miller W, Schuster SC. Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution. Bmc Evolutionary Biology. 9: 95. PMID 19432984 DOI: 10.1186/1471-2148-9-95 |
0.416 |
|
| 2008 |
Gilbert MT, Drautz DI, Lesk AM, Ho SY, Qi J, Ratan A, Hsu CH, Sher A, Dalén L, Götherström A, Tomsho LP, Rendulic S, Packard M, Campos PF, Kuznetsova TV, et al. Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes. Proceedings of the National Academy of Sciences of the United States of America. 105: 8327-32. PMID 18541911 DOI: 10.1073/Pnas.0802315105 |
0.507 |
|
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