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Jeffery M. Coller, Ph.D. - Publications

Affiliations: 
University of Wisconsin, Madison, Madison, WI 
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Pinkard O, McFarland S, Sweet T, Coller J. Quantitative tRNA-sequencing uncovers metazoan tissue-specific tRNA regulation. Nature Communications. 11: 4104. PMID 32796835 DOI: 10.1038/S41467-020-17879-X  0.434
2020 Buschauer R, Matsuo Y, Sugiyama T, Chen YH, Alhusaini N, Sweet T, Ikeuchi K, Cheng J, Matsuki Y, Nobuta R, Gilmozzi A, Berninghausen O, Tesina P, Becker T, Coller J, et al. The Ccr4-Not complex monitors the translating ribosome for codon optimality. Science (New York, N.Y.). 368. PMID 32299921 DOI: 10.1126/Science.Aay6912  0.603
2020 Forrest ME, Pinkard O, Martin S, Sweet TJ, Hanson G, Coller J. Codon and amino acid content are associated with mRNA stability in mammalian cells. Plos One. 15: e0228730. PMID 32053646 DOI: 10.1371/Journal.Pone.0228730  0.557
2019 Schaffer AE, Pinkard O, Coller JM. tRNA Metabolism and Neurodevelopmental Disorders. Annual Review of Genomics and Human Genetics. PMID 31082281 DOI: 10.1146/Annurev-Genom-083118-015334  0.369
2019 Seth P, Hsieh PN, Jamal S, Wang L, Gygi SP, Jain MK, Coller J, Stamler JS. Regulation of MicroRNA Machinery and Development by Interspecies S-Nitrosylation. Cell. 176: 1014-1025.e12. PMID 30794773 DOI: 10.1016/J.Cell.2019.01.037  0.334
2018 Mugridge JS, Coller J, Gross JD. Publisher Correction: Structural and molecular mechanisms for the control of eukaryotic 5'-3' mRNA decay. Nature Structural & Molecular Biology. PMID 30575809 DOI: 10.1038/S41594-018-0178-6  0.407
2018 Mugridge JS, Coller J, Gross JD. Structural and molecular mechanisms for the control of eukaryotic 5'-3' mRNA decay. Nature Structural & Molecular Biology. PMID 30518847 DOI: 10.1038/S41594-018-0164-Z  0.48
2018 Arango D, Sturgill D, Alhusaini N, Dillman AA, Sweet TJ, Hanson G, Hosogane M, Sinclair WR, Nanan KK, Mandler MD, Fox SD, Zengeya TT, Andresson T, Meier JL, Coller J, et al. Acetylation of Cytidine in mRNA Promotes Translation Efficiency. Cell. PMID 30449621 DOI: 10.1016/J.Cell.2018.10.030  0.624
2018 Burow DA, Martin S, Quail JF, Alhusaini N, Coller J, Cleary MD. Attenuated Codon Optimality Contributes to Neural-Specific mRNA Decay in Drosophila. Cell Reports. 24: 1704-1712. PMID 30110627 DOI: 10.1016/J.Celrep.2018.07.039  0.537
2018 Hanson G, Alhusaini N, Morris N, Sweet T, Coller J. Translation elongation and mRNA stability are coupled through the ribosomal A-site. Rna (New York, N.Y.). PMID 29997263 DOI: 10.1261/Rna.066787.118  0.618
2018 Webster MW, Chen YH, Stowell JAW, Alhusaini N, Sweet T, Graveley BR, Coller J, Passmore LA. mRNA Deadenylation Is Coupled to Translation Rates by the Differential Activities of Ccr4-Not Nucleases. Molecular Cell. 70: 1089-1100.e8. PMID 29932902 DOI: 10.1016/J.Molcel.2018.05.033  0.612
2018 Coller J, Grayhack EJ. The analysis of translational mechanisms that modulate gene expression. Methods (San Diego, Calif.). 137: 1-2. PMID 29571431 DOI: 10.1016/J.Ymeth.2018.03.005  0.34
2017 Lima SA, Chipman LB, Nicholson AL, Chen YH, Yee BA, Yeo GW, Coller J, Pasquinelli AE. Short poly(A) tails are a conserved feature of highly expressed genes. Nature Structural & Molecular Biology. PMID 29106412 DOI: 10.1038/Nsmb.3499  0.625
2017 Hanson G, Coller J. Codon optimality, bias and usage in translation and mRNA decay. Nature Reviews. Molecular Cell Biology. PMID 29018283 DOI: 10.1038/Nrm.2017.91  0.598
2017 Coller J. mRNA decapping in 3D. Nature Structural & Molecular Biology. 23: 954-956. PMID 27814348 DOI: 10.1038/Nsmb.3315  0.496
2016 Radhakrishnan A, Chen YH, Martin S, Alhusaini N, Green R, Coller J. The DEAD-Box Protein Dhh1p Couples mRNA Decay and Translation by Monitoring Codon Optimality. Cell. PMID 27641505 DOI: 10.1016/J.Cell.2016.08.053  0.598
2016 Chen YH, Coller J. A Universal Code for mRNA Stability? Trends in Genetics : Tig. PMID 27594172 DOI: 10.1016/J.Tig.2016.08.007  0.564
2016 Tat TT, Maroney PA, Chamnongpol S, Coller J, Nilsen TW. Cotranslational microRNA mediated messenger RNA destabilization. Elife. 5. PMID 27058298 DOI: 10.7554/Elife.12880  0.561
2016 Alhusaini N, Coller J. The deadenylase components Not2p, Not3p, and Not5p promote mRNA decapping. Rna (New York, N.Y.). 22: 709-21. PMID 26952104 DOI: 10.1261/Rna.054742.115  0.565
2016 Tat TT, Maroney PA, Chamnongpol S, Coller J, Nilsen TW. Author response: Cotranslational microRNA mediated messenger RNA destabilization Elife. DOI: 10.7554/Elife.12880.019  0.397
2015 Richter JD, Coller J. Pausing on Polyribosomes: Make Way for Elongation in Translational Control. Cell. 163: 292-300. PMID 26451481 DOI: 10.1016/J.Cell.2015.09.041  0.526
2015 Martin S, Coller J. A Method that Will Captivate U. Molecular Cell. 59: 716-7. PMID 26340422 DOI: 10.1016/J.Molcel.2015.08.017  0.422
2015 Coller J. Caps and tales. Rna (New York, N.Y.). 21: 588-9. PMID 25780151 DOI: 10.1261/Rna.050534.115  0.386
2015 Presnyak V, Alhusaini N, Chen YH, Martin S, Morris N, Kline N, Olson S, Weinberg D, Baker KE, Graveley BR, Coller J. Codon optimality is a major determinant of mRNA stability. Cell. 160: 1111-24. PMID 25768907 DOI: 10.1016/J.Cell.2015.02.029  0.543
2014 Martin S, Coller J. PAN-orama: Three convergent views of a eukaryotic deadenylase Nature Structural and Molecular Biology. 21: 577-578. PMID 24992224 DOI: 10.1038/Nsmb.2850  0.55
2014 Smith JE, Alvarez-Dominguez JR, Kline N, Huynh NJ, Geisler S, Hu W, Coller J, Baker KE. Translation of small open reading frames within unannotated RNA transcripts in Saccharomyces cerevisiae. Cell Reports. 7: 1858-66. PMID 24931603 DOI: 10.1016/J.Celrep.2014.05.023  0.579
2013 Geisler S, Coller J. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts Nature Reviews Molecular Cell Biology. 14: 699-712. PMID 24105322 DOI: 10.1038/Nrm3679  0.476
2013 Hu W, Coller J. Polysome analysis for determining mRNA and ribosome association in Saccharomyces cerevisiae. Methods in Enzymology. 530: 193-206. PMID 24034323 DOI: 10.1016/B978-0-12-420037-1.00011-7  0.601
2013 Hu W, Coller J. Method for measuring mRNA decay rate in Saccharomyces cerevisiae. Methods in Enzymology. 530: 137-55. PMID 24034319 DOI: 10.1016/B978-0-12-420037-1.00007-5  0.613
2013 Presnyak V, Coller J. The DHH1/RCKp54 family of helicases: An ancient family of proteins that promote translational silencing Biochimica Et Biophysica Acta. 1829: 817-823. PMID 23528737 DOI: 10.1016/J.Bbagrm.2013.03.006  0.568
2012 Geisler S, Coller J. XRN1: A Major 5′ to 3′ Exoribonuclease in Eukaryotic Cells The Enzymes. 31: 97-114. PMID 27166442 DOI: 10.1016/B978-0-12-404740-2.00005-7  0.536
2012 Sweet T, Kovalak C, Coller J. The DEAD-box protein Dhh1 promotes decapping by slowing ribosome movement. Plos Biology. 10: e1001342. PMID 22719226 DOI: 10.1371/Journal.Pbio.1001342  0.668
2012 Hu W, Coller J. What comes first: translational repression or mRNA degradation? The deepening mystery of microRNA function. Cell Research. 22: 1322-4. PMID 22613951 DOI: 10.1038/Cr.2012.80  0.411
2012 Geisler S, Lojek L, Khalil AM, Baker KE, Coller J. Decapping of long noncoding RNAs regulates inducible genes. Molecular Cell. 45: 279-91. PMID 22226051 DOI: 10.1016/J.Molcel.2011.11.025  0.442
2011 Castellani RJ, Gupta Y, Sheng B, Siedlak SL, Harris PL, Coller JM, Perry G, Lee HG, Tabaton M, Smith MA, Wang X, Zhu X. A novel origin for granulovacuolar degeneration in aging and Alzheimer's disease: parallels to stress granules. Laboratory Investigation; a Journal of Technical Methods and Pathology. 91: 1777-86. PMID 21968813 DOI: 10.1038/Labinvest.2011.149  0.354
2011 Blewett N, Coller J, Goldstrohm A. A quantitative assay for measuring mRNA decapping by splinted ligation reverse transcription polymerase chain reaction: qSL-RT-PCR. Rna (New York, N.Y.). 17: 535-43. PMID 21220548 DOI: 10.1261/Rna.2436411  0.574
2010 Geisler S, Coller J. Alternate Endings: A New Story for mRNA Decapping Molecular Cell. 40: 349-350. PMID 21070961 DOI: 10.1016/J.Molcel.2010.10.025  0.442
2010 Hu W, Petzold C, Coller J, Baker KE. Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae. Nature Structural & Molecular Biology. 17: 244-7. PMID 20118937 DOI: 10.1038/Nsmb.1734  0.603
2009 Hu W, Sweet TJ, Chamnongpol S, Baker KE, Coller J. Co-translational mRNA decay in Saccharomyces cerevisiae. Nature. 461: 225-9. PMID 19701183 DOI: 10.1038/Nature08265  0.645
2009 Coller J. Methods to determine mRNA half-life in Saccharomyces cerevisiae. Methods in Enzymology. 448: 267-84. PMID 19111181 DOI: 10.1016/S0076-6879(08)02614-1  0.565
2009 Coller J, Rueda D. RNA research in the rustbelt. Rna Biology. 6: 9-11. PMID 19098455 DOI: 10.4161/Rna.6.1.7459  0.351
2007 Coller J, Wickens M. Tethered function assays: an adaptable approach to study RNA regulatory proteins. Methods in Enzymology. 429: 299-321. PMID 17913629 DOI: 10.1016/S0076-6879(07)29014-7  0.707
2007 Sweet TJ, Boyer B, Hu W, Baker KE, Coller J. Microtubule disruption stimulates P-body formation. Rna (New York, N.Y.). 13: 493-502. PMID 17307817 DOI: 10.1261/Rna.355807  0.425
2007 Baker KE, Coller J. The many routes to regulating mRNA translation. Genome Biology. 7: 332. PMID 17176455 DOI: 10.1186/Gb-2006-7-12-332  0.539
2006 Barbee SA, Estes PS, Cziko AM, Hillebrand J, Luedeman RA, Coller JM, Johnson N, Howlett IC, Geng C, Ueda R, Brand AH, Newbury SF, Wilhelm JE, Levine RB, Nakamura A, et al. Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies. Neuron. 52: 997-1009. PMID 17178403 DOI: 10.1016/J.Neuron.2006.10.028  0.442
2005 Coller J, Parker R. General translational repression by activators of mRNA decapping. Cell. 122: 875-86. PMID 16179257 DOI: 10.1016/J.Cell.2005.07.012  0.588
2005 Cheng Z, Coller J, Parker R, Song H. Crystal structure and functional analysis of DEAD-box protein Dhh1p. Rna (New York, N.Y.). 11: 1258-70. PMID 15987810 DOI: 10.1261/Rna.2920905  0.472
2004 Baker KE, Coller J, Parker R. The yeast Apq12 protein affects nucleocytoplasmic mRNA transport Rna. 10: 1352-1358. PMID 15273328 DOI: 10.1261/Rna.7420504  0.608
2004 Coller J, Parker R. Eukaryotic mRNA Decapping Annual Review of Biochemistry. 73: 861-890. PMID 15189161 DOI: 10.1146/Annurev.Biochem.73.011303.074032  0.607
2002 Coller J, Wickens M. Tethered function assays using 3' untranslated regions. Methods (San Diego, Calif.). 26: 142-50. PMID 12054890 DOI: 10.1016/S1046-2023(02)00016-6  0.691
2001 Coller JM, Tucker M, Sheth U, Valencia-Sanchez MA, Parker R. The DEAD box helicase, Dhh1p, functions in mRNA decapping and interacts with both the decapping and deadenylase complexes. Rna (New York, N.Y.). 7: 1717-27. PMID 11780629 DOI: 10.1017/S135583820101994X  0.616
2000 Gray NK, Coller JM, Dickson KS, Wickens M. Multiple portions of poly(A)-binding protein stimulate translation in vivo. The Embo Journal. 19: 4723-33. PMID 10970864 DOI: 10.1093/Emboj/19.17.4723  0.683
1998 Coller JM, Gray NK, Wickens MP. mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation. Genes & Development. 12: 3226-35. PMID 9784497 DOI: 10.1101/Gad.12.20.3226  0.726
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