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Jianming Xie, Ph.D. - Publications

Affiliations: 
2014- Pharmacology and Pharmaceutical Sciences University of Southern California, Los Angeles, CA, United States 
Area:
Chemical Biology, Protein Engineering, Immunology
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Guo J, Chowdhury RR, Mallajosyula V, Xie J, Dubey M, Liu Y, Li J, Wei YL, Palanski BA, Wang C, Qiu L, Ohanyan M, Kask O, Sola E, Kamalyan L, et al. γδ T cell antigen receptor polyspecificity enables T cell responses to a broad range of immune challenges. Proceedings of the National Academy of Sciences of the United States of America. 121: e2315592121. PMID 38227652 DOI: 10.1073/pnas.2315592121  0.347
2019 Yuan S, Li H, Xie J, Sun X. Quantitative Trait Module-Based Genetic Analysis of Alzheimer's Disease. International Journal of Molecular Sciences. 20. PMID 31775305 DOI: 10.3390/ijms20235912  0.331
2019 Xie J, Cai Y, Li H, Wu J, Zhao X, Luo K, Sharma A, Xie J, Sun X, Liu H. DNMHMM: an approach to identify the differential nucleosome regions in multiple cell types based on a Hidden Markov Model. Bio Systems. 104033. PMID 31541672 DOI: 10.1016/j.biosystems.2019.104033  0.342
2017 Liu L, Xie J, Sun X, Luo K, Qin ZS, Liu H. An approach of identifying differential nucleosome regions in multiple samples. Bmc Genomics. 18: 135. PMID 28173752 DOI: 10.1186/s12864-017-3541-9  0.334
2016 Chen H, Zhang Y, Shi Z, Feng H, Yao S, Xie J, Zhou H. The Efficacy and Tolerability of Mycophenolate Mofetil in Treating Neuromyelitis Optica and Neuromyelitis Optica Spectrum Disorder in Western China. Clinical Neuropharmacology. PMID 26818042 DOI: 10.1097/WNF.0000000000000131  0.311
2016 Sesay DF, Habte-Tsion HM, Zhou Q, Ren M, Xie J, Liu B, Chen R, Pan L. Effects of dietary folic acid on the growth, digestive enzyme activity, immune response and antioxidant enzyme activity of blunt snout bream (Megalobrama amblycephala) fingerling Aquaculture. 452: 142-150. DOI: 10.1016/j.aquaculture.2015.10.026  0.314
2015 Huang Q, Luo H, Liu M, Zeng J, Abdalla AE, Duan X, Li Q, Xie J. The effect of Mycobacterium tuberculosis CRISPR-associated Cas2 (Rv2816c) on stress response genes expression, morphology and macrophage survival of Mycobacterium smegmatis. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 26498723 DOI: 10.1016/j.meegid.2015.10.019  0.37
2015 Ueda H, Zhou J, Xie J, Davis MM. Distinct Roles of Cytoskeletal Components in Immunological Synapse Formation and Directed Secretion. Journal of Immunology (Baltimore, Md. : 1950). PMID 26392461 DOI: 10.4049/Jimmunol.1402175  0.399
2015 Kattah NH, Newell EW, Jarrell JA, Chu AD, Xie J, Kattah MG, Goldberger O, Ye J, Chakravarty EF, Davis MM, Utz PJ. Tetramers reveal IL-17-secreting CD4+ T cells that are specific for U1-70 in lupus and mixed connective tissue disease. Proceedings of the National Academy of Sciences of the United States of America. 112: 3044-9. PMID 25713364 DOI: 10.1073/Pnas.1424796112  0.419
2014 Ding DW, Xu J, Li L, Xie JM, Sun X. Identifying the potential extracellular electron transfer pathways from a c-type cytochrome network. Molecular Biosystems. 10: 3138-46. PMID 25227320 DOI: 10.1039/c4mb00386a  0.34
2013 Huang J, Brameshuber M, Zeng X, Xie J, Li QJ, Chien YH, Valitutti S, Davis MM. A single peptide-major histocompatibility complex ligand triggers digital cytokine secretion in CD4(+) T cells. Immunity. 39: 846-57. PMID 24120362 DOI: 10.1016/J.Immuni.2013.08.036  0.418
2013 Guy CS, Vignali KM, Temirov J, Bettini ML, Overacre AE, Smeltzer M, Zhang H, Huppa JB, Tsai YH, Lobry C, Xie J, Dempsey PJ, Crawford HC, Aifantis I, Davis MM, et al. Distinct TCR signaling pathways drive proliferation and cytokine production in T cells. Nature Immunology. 14: 262-70. PMID 23377202 DOI: 10.1038/Ni.2538  0.425
2013 Xie J, Tato CM, Davis MM. How the immune system talks to itself: the varied role of synapses. Immunological Reviews. 251: 65-79. PMID 23278741 DOI: 10.1111/Imr.12017  0.394
2013 Liu H, Luo K, Wen H, Ma X, Xie J, Sun X. Quantitative analysis reveals increased histone modifications and a broad nucleosome-free region bound by histone acetylases in highly expressed genes in human CD4+ T cells. Genomics. 101: 113-9. PMID 23195408 DOI: 10.1016/j.ygeno.2012.11.007  0.325
2013 Ma X, Guo J, Liu HD, Xie JM, Sun X. Sequence-based prediction of DNA-binding residues in proteins with conservation and correlation information. Ieee/Acm Transactions On Computational Biology and Bioinformatics. 9: 1766-75. PMID 22868682 DOI: 10.1109/TCBB.2012.106  0.433
2012 Xie J, Huppa JB, Newell EW, Huang J, Ebert PJ, Li QJ, Davis MM. Photocrosslinkable pMHC monomers stain T cells specifically and cause ligand-bound TCRs to be 'preferentially' transported to the cSMAC. Nature Immunology. 13: 674-80. PMID 22660579 DOI: 10.1038/Ni.2344  0.431
2012 Gong L, Yan Y, Xie J, Liu H, Sun X. Prediction of autism susceptibility genes based on association rules. Journal of Neuroscience Research. 90: 1119-25. PMID 22345019 DOI: 10.1002/jnr.23015  0.31
2011 Ma X, Guo J, Wu J, Liu H, Yu J, Xie J, Sun X. Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature. Proteins. 79: 1230-9. PMID 21268114 DOI: 10.1002/prot.22958  0.417
2009 Ebert PJ, Jiang S, Xie J, Li QJ, Davis MM. An endogenous positively selecting peptide enhances mature T cell responses and becomes an autoantigen in the absence of microRNA miR-181a. Nature Immunology. 10: 1162-9. PMID 19801983 DOI: 10.1038/Ni.1797  0.408
2009 Yang X, Huang Y, Chen JL, Xie J, Sun X, Lussier YA. Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia. Bmc Bioinformatics. 10: S6. PMID 19761576 DOI: 10.1186/1471-2105-10-S9-S6  0.317
2008 Liu H, Wu J, Xie J, Yang X, Lu Z, Sun X. Characteristics of nucleosome core DNA and their applications in predicting nucleosome positions. Biophysical Journal. 94: 4597-604. PMID 18326654 DOI: 10.1529/Biophysj.107.117028  0.312
2007 Seyedsayamdost MR, Xie J, Chan CT, Schultz PG, Stubbe J. Site-specific insertion of 3-aminotyrosine into subunit alpha2 of E. coli ribonucleotide reductase: direct evidence for involvement of Y730 and Y731 in radical propagation. Journal of the American Chemical Society. 129: 15060-71. PMID 17990884 DOI: 10.1021/Ja076043Y  0.431
2007 Xie J, Liu W, Schultz PG. A genetically encoded bidentate, metal-binding amino acid. Angewandte Chemie (International Ed. in English). 46: 9239-42. PMID 17893898 DOI: 10.1002/Anie.200703397  0.614
2007 Xie J, Supekova L, Schultz PG. A genetically encoded metabolically stable analogue of phosphotyrosine in Escherichia coli. Acs Chemical Biology. 2: 474-8. PMID 17622177 DOI: 10.1021/Cb700083W  0.55
2006 Schultz KC, Supekova L, Ryu Y, Xie J, Perera R, Schultz PG. A genetically encoded infrared probe. Journal of the American Chemical Society. 128: 13984-5. PMID 17061854 DOI: 10.1021/Ja0636690  0.731
2006 Zeng H, Xie J, Schultz PG. Genetic introduction of a diketone-containing amino acid into proteins. Bioorganic & Medicinal Chemistry Letters. 16: 5356-9. PMID 16934461 DOI: 10.1016/J.Bmcl.2006.07.094  0.673
2006 Xie J, Schultz PG. A chemical toolkit for proteins--an expanded genetic code. Nature Reviews. Molecular Cell Biology. 7: 775-82. PMID 16926858 DOI: 10.1038/Nrm2005  0.581
2006 Wang J, Xie J, Schultz PG. A genetically encoded fluorescent amino acid. Journal of the American Chemical Society. 128: 8738-9. PMID 16819861 DOI: 10.1021/Ja062666K  0.737
2006 Wang L, Xie J, Schultz PG. Expanding the genetic code. Annual Review of Biophysics and Biomolecular Structure. 35: 225-49. PMID 16689635 DOI: 10.1146/Annurev.Biophys.35.101105.121507  0.612
2006 Deiters A, Groff D, Ryu Y, Xie J, Schultz PG. A genetically encoded photocaged tyrosine. Angewandte Chemie (International Ed. in English). 45: 2728-31. PMID 16548032 DOI: 10.1002/Anie.200600264  0.701
2006 Bose M, Groff D, Xie J, Brustad E, Schultz PG. The incorporation of a photoisomerizable amino acid into proteins in E. coli. Journal of the American Chemical Society. 128: 388-9. PMID 16402807 DOI: 10.1021/Ja055467U  0.72
2005 Xie J, Schultz PG. Adding amino acids to the genetic repertoire. Current Opinion in Chemical Biology. 9: 548-54. PMID 16260173 DOI: 10.1016/J.Cbpa.2005.10.011  0.588
2005 Xie J, Schultz PG. An expanding genetic code. Methods (San Diego, Calif.). 36: 227-38. PMID 16076448 DOI: 10.1016/J.Ymeth.2005.04.010  0.577
2004 Xie J, Wang L, Wu N, Brock A, Spraggon G, Schultz PG. The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination. Nature Biotechnology. 22: 1297-301. PMID 15378068 DOI: 10.1038/Nbt1013  0.646
2003 Wang L, Xie J, Deniz AA, Schultz PG. Unnatural amino acid mutagenesis of green fluorescent protein. The Journal of Organic Chemistry. 68: 174-6. PMID 12515477 DOI: 10.1021/Jo026570U  0.693
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