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Diego A. Martinez, Ph.D. - Publications

Affiliations: 
2010 Biology University of New Mexico, Albuquerque, NM, United States 
Area:
Bioinformatics Biology, Genetics
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25 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Gaskell J, Kersten P, Larrondo LF, Canessa P, Martinez D, Hibbett D, Schmoll M, Kubicek CP, Martinez AT, Yadav J, Master E, Magnuson JK, Yaver D, Berka R, Lail K, et al. Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12. Genomics Data. 14: 21-23. PMID 28831381 DOI: 10.1016/J.Gdata.2017.08.003  0.306
2015 Hirakawa MP, Martinez DA, Sakthikumar S, Anderson MZ, Berlin A, Gujja S, Zeng Q, Zisson E, Wang JM, Greenberg JM, Berman J, Bennett RJ, Cuomo CA. Genetic and phenotypic intra-species variation in Candida albicans. Genome Research. 25: 413-25. PMID 25504520 DOI: 10.1101/Gr.174623.114  0.325
2012 Martinez DA, Oliver BG, Gräser Y, Goldberg JM, Li W, Martinez-Rossi NM, Monod M, Shelest E, Barton RC, Birch E, Brakhage AA, Chen Z, Gurr SJ, Heiman D, Heitman J, et al. Comparative genome analysis of Trichophyton rubrum and related dermatophytes reveals candidate genes involved in infection. Mbio. 3: e00259-12. PMID 22951933 DOI: 10.1128/Mbio.00259-12  0.396
2011 Berka RM, Grigoriev IV, Otillar R, Salamov A, Grimwood J, Reid I, Ishmael N, John T, Darmond C, Moisan MC, Henrissat B, Coutinho PM, Lombard V, Natvig DO, Lindquist E, ... ... Martinez D, et al. Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris. Nature Biotechnology. 29: 922-7. PMID 21964414 DOI: 10.1038/Nbt.1976  0.368
2011 Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, ... ... Martinez D, et al. Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. Genome Research. 21: 885-97. PMID 21543515 DOI: 10.1101/Gr.112169.110  0.452
2011 Kubicek CP, Herrera-Estrella A, Seidl-Seiboth V, Martinez DA, Druzhinina IS, Thon M, Zeilinger S, Casas-Flores S, Horwitz BA, Mukherjee PK, Mukherjee M, Kredics L, Alcaraz LD, Aerts A, Antal Z, et al. Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma. Genome Biology. 12: R40. PMID 21501500 DOI: 10.1186/Gb-2011-12-4-R40  0.339
2010 Arvas M, Haiminen N, Smit B, Rautio J, Vitikainen M, Wiebe M, Martinez D, Chee C, Kunkel J, Sanchez C, Nelson MA, Pakula T, Saloheimo M, Penttilä M, Kivioja T. Detecting novel genes with sparse arrays. Gene. 467: 41-51. PMID 20691772 DOI: 10.1016/J.Gene.2010.07.009  0.576
2010 Martinez DA, Nelson MA. The next generation becomes the now generation. Plos Genetics. 6: e1000906. PMID 20386747 DOI: 10.1371/Journal.Pgen.1000906  0.588
2009 Roy S, Martinez D, Platero H, Lane T, Werner-Washburne M. Exploiting amino acid composition for predicting protein-protein interactions. Plos One. 4: e7813. PMID 19936254 DOI: 10.1371/Journal.Pone.0007813  0.379
2009 Schübbe S, Williams TJ, Xie G, Kiss HE, Brettin TS, Martinez D, Ross CA, Schüler D, Cox BL, Nealson KH, Bazylinski DA. Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1. Applied and Environmental Microbiology. 75: 4835-52. PMID 19465526 DOI: 10.1128/Aem.02874-08  0.386
2009 Vanden Wymelenberg A, Gaskell J, Mozuch M, Kersten P, Sabat G, Martinez D, Cullen D. Transcriptome and secretome analyses of Phanerochaete chrysosporium reveal complex patterns of gene expression. Applied and Environmental Microbiology. 75: 4058-68. PMID 19376920 DOI: 10.1128/Aem.00314-09  0.468
2009 Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, et al. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences of the United States of America. 106: 1954-9. PMID 19193860 DOI: 10.1073/Pnas.0809575106  0.345
2008 Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EG, Grigoriev IV, Harris P, Jackson M, Kubicek CP, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina). Nature Biotechnology. 26: 553-60. PMID 18454138 DOI: 10.1038/Nbt1403  0.596
2008 Martinez D, Berka RM, Henrissat B, Saloheimo M, Arvas M, Baker SE, Chapman J, Chertkov O, Coutinho PM, Cullen D, Danchin EGJ, Grigoriev IV, Harris P, Jackson M, Kubicek CP, et al. Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) (Nature Biotechnology (2008) 26, (553-560)) Nature Biotechnology. 26: 1193. DOI: 10.1038/Nbt1008-1193A  0.579
2007 Montsant A, Allen AE, Coesel S, Martino AD, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, ... ... Martinez D, et al. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana Journal of Phycology. 43: 585-604. DOI: 10.1111/J.1529-8817.2007.00342.X  0.393
2006 Vanden Wymelenberg A, Minges P, Sabat G, Martinez D, Aerts A, Salamov A, Grigoriev I, Shapiro H, Putnam N, Belinky P, Dosoretz C, Gaskell J, Kersten P, Cullen D. Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins. Fungal Genetics and Biology : Fg & B. 43: 343-56. PMID 16524749 DOI: 10.1016/J.Fgb.2006.01.003  0.418
2006 Grigoriev IV, Martinez DA, Salamov AA. Fungal genomic annotation Applied Mycology and Biotechnology. 6: 123-142. DOI: 10.1016/S1874-5334(06)80008-0  0.387
2005 Wymelenberg AV, Sabat G, Martinez D, Rajangam AS, Teeri TT, Gaskell J, Kersten PJ, Cullen D. The Phanerochaete chrysosporium secretome: database predictions and initial mass spectrometry peptide identifications in cellulose-grown medium. Journal of Biotechnology. 118: 17-34. PMID 15888348 DOI: 10.1016/J.Jbiotec.2005.03.010  0.372
2004 Anwaruzzaman M, Chin BL, Li XP, Lohr M, Martinez DA, Niyogi KK. Genomic analysis of mutants affecting xanthophyll biosynthesis and regulation of photosynthetic light harvesting in Chlamydomonas reinhardtii. Photosynthesis Research. 82: 265-76. PMID 16143839 DOI: 10.1007/S11120-004-2439-Y  0.329
2004 Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (New York, N.Y.). 306: 79-86. PMID 15459382 DOI: 10.1126/Science.1101156  0.401
2004 Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, ... ... Martinez D, et al. The DNA sequence and comparative analysis of human chromosome 5. Nature. 431: 268-74. PMID 15372022 DOI: 10.1038/Nature02919  0.362
2004 Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, Helfenbein KG, Ramaiya P, Detter JC, Larimer F, Coutinho PM, Henrissat B, Berka R, Cullen D, Rokhsar D. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nature Biotechnology. 22: 695-700. PMID 15122302 DOI: 10.1038/Nbt967  0.394
2004 Grimwood J, Gordon LA, Olsen A, Terry A, Schmutz J, Lamerdin J, Hellsten U, Goodstein D, Couronne O, Tran-Gyamfi M, Aerts A, Altherr M, Ashworth L, Bajorek E, Black S, ... ... Martinez D, et al. The DNA sequence and biology of human chromosome 19. Nature. 428: 529-35. PMID 15057824 DOI: 10.1038/Nature02399  0.33
2003 Grossman AR, Harris EE, Hauser C, Lefebvre PA, Martinez D, Rokhsar D, Shrager J, Silflow CD, Stern D, Vallon O, Zhang Z. Chlamydomonas reinhardtii at the crossroads of genomics. Eukaryotic Cell. 2: 1137-50. PMID 14665449 DOI: 10.1128/Ec.2.6.1137-1150.2003  0.356
2002 Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B, Di Gregorio A, Gelpke M, Goodstein DM, Harafuji N, Hastings KE, Ho I, Hotta K, Huang W, ... ... Martinez D, et al. The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Science (New York, N.Y.). 298: 2157-67. PMID 12481130 DOI: 10.1126/Science.1080049  0.426
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