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Wu Xu, Ph.D. - Publications

Affiliations: 
2001 Iowa State University, Ames, IA, United States 
Area:
Biochemistry, General Biophysics, Molecular Biology
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Huang C, Duan X, Ge H, Xiao Z, Zheng L, Wang G, Dong J, Wang Y, Zhang Y, Huang X, An H, Xu W, Wang Y. Parallel proteomic comparison of mutants with altered carbon metabolism reveals Hik8 regulation of P phosphorylation and glycogen accumulation in a cyanobacterium. Molecular & Cellular Proteomics : McP. 100582. PMID 37225018 DOI: 10.1016/j.mcpro.2023.100582  0.406
2023 Wang Y, Ge H, Xiao Z, Huang C, Wang G, Duan X, Zheng L, Dong J, Huang X, Zhang Y, An H, Xu W, Wang Y. Spatial Proteome Reorganization of a Photosynthetic Model Cyanobacterium in Response to Abiotic Stresses. Journal of Proteome Research. PMID 36930737 DOI: 10.1021/acs.jproteome.2c00759  0.369
2022 Xiao Z, Huang C, Ge H, Wang Y, Duan X, Wang G, Zheng L, Dong J, Huang X, Zhang Y, An H, Xu W, Wang Y. Proximity labeling facilitates defining the proteome neighborhood of photosystem II oxygen evolution complex in a model cyanobacterium. Molecular & Cellular Proteomics : McP. 100440. PMID 36356940 DOI: 10.1016/j.mcpro.2022.100440  0.402
2021 Wang J, Huang X, Ge H, Wang Y, Chen W, Zheng L, Huang C, Yang H, Li L, Sui N, Wang Y, Zhang Y, Lu D, Fang L, Xu W, et al. The Quantitative Proteome Atlas of a Model Cyanobacterium. Journal of Genetics and Genomics = Yi Chuan Xue Bao. PMID 34775074 DOI: 10.1016/j.jgg.2021.09.007  0.345
2021 Chen W, Zheng L, Dong J, Ge H, Huang X, Wang G, Huang C, Wang Y, Lu D, Xu W, Wang Y. A Systematic Survey of the Light/Dark-dependent Protein Degradation Events in a Model Cyanobacterium. Molecular & Cellular Proteomics : McP. 20: 100162. PMID 34655801 DOI: 10.1016/j.mcpro.2021.100162  0.394
2020 Xu W, Wang Y. Post-translational Modifications of Serine/Threonine and Histidine Kinases and Their Roles in Signal Transductions in Synechocystis Sp. PCC 6803. Applied Biochemistry and Biotechnology. PMID 33159456 DOI: 10.1007/s12010-020-03435-2  0.359
2020 Agarwala N, Makita H, Luo L, Xu W, Hastings G. Reversible inhibition and reactivation of electron transfer in photosystem I. Photosynthesis Research. PMID 32447611 DOI: 10.1007/S11120-020-00760-9  0.301
2019 Zhang Y, Huang X, Wang J, Wang X, Liu X, Chen Y, Xu W, Wang Y. Nitration-Induced Ubiquitination and Degradation Control Quality of ERK1. The Biochemical Journal. PMID 31196894 DOI: 10.1042/Bcj20190240  0.427
2019 Xu W, Wang Y. Sequences, Domain Architectures, and Biological Functions of the Serine/Threonine and Histidine Kinases in Synechocystis sp. PCC 6803. Applied Biochemistry and Biotechnology. PMID 30778824 DOI: 10.1007/S12010-019-02971-W  0.409
2019 Xu W, Zhang Y, Achi OY, Knierim KD, Hanks JG, Wang Y. Tyrosine nitration of human ERK1 introduces an intra-hydrogen bond by molecular dynamics simulations Structural Chemistry. 30: 1459-1470. DOI: 10.1007/S11224-019-01306-Z  0.439
2018 Gao X, Xie XJ, Hsu FN, Li X, Liu M, Hemba-Waduge RU, Xu W, Ji JY. CDK8 Mediates the Dietary Effects on Developmental Transition in Drosophila. Developmental Biology. PMID 30352217 DOI: 10.1016/J.Ydbio.2018.10.001  0.33
2018 Ge H, Fang L, Huang X, Wang J, Chen W, Zhang Y, Wang X, Sui N, Xu W, He Q, Wang Y. Activation of the Oxidative Pentose Phosphate Pathway is Critical for Photomixotrophic Growth of a hik33-deletion mutant of Synechocystis sp. PCC 6803. Proteomics. e1800046. PMID 30194912 DOI: 10.1002/Pmic.201800046  0.445
2018 Chen W, Fang L, Huang X, Ge H, Wang J, Wang X, Zhang Y, Sui N, Xu W, Wang Y. Systematic identification of light-regulated cold-responsive proteome in a model cyanobacterium. Journal of Proteomics. PMID 29545168 DOI: 10.1016/J.Jprot.2018.03.006  0.454
2017 Ge H, Fang L, Huang X, Wang J, Chen W, Liu Y, Zhang Y, Wang X, Xu W, He Q, Wang Y. Translating Divergent Environmental Stresses into a Common Proteome Response through the Histidine Kinase 33 (Hik33) in a Model Cyanobacterium. Molecular & Cellular Proteomics : McP. 16: 1258-1274. PMID 28668777 DOI: 10.1074/Mcp.M116.068080  0.446
2017 Ge H, Fang L, Huang X, Wang J, Chen W, Liu Y, Zhang Y, Wang X, Xu W, He Q, Wang Y. Translating Divergent Environmental Stresses into a Common Proteome Response through Hik33 in a Model Cyanobacterium. Molecular & Cellular Proteomics : McP. PMID 28500030 DOI: 10.1074/Mcp.M117.068080  0.444
2017 Sun Y, Chao JR, Xu W, Pourpak A, Boyd K, Moshiach S, Qi GY, Fu A, Shao HR, Pounds S, Morris SW. MLF1 is a proapoptotic antagonist of HOP complex-mediated survival. Biochimica Et Biophysica Acta. PMID 28137643 DOI: 10.1016/J.Bbamcr.2017.01.016  0.307
2016 Fang L, Ge H, Huang X, Liu Y, Lu M, Wang J, Chen W, Xu W, Wang Y. Trophic Mode-Dependent Proteomic Analysis Reveals Functional Significance of Light-Independent Chlorophyll Synthesis in Synechocystis sp. PCC 6803. Molecular Plant. PMID 27585879 DOI: 10.1016/J.Molp.2016.08.006  0.444
2016 Odoux A, Jindal D, Tamas TC, Lim BW, Pollard D, Xu W. Experimental and molecular dynamics studies showed that CBP KIX mutation affects the stability of CBP:c-Myb complex. Computational Biology and Chemistry. 62: 47-59. PMID 27082784 DOI: 10.1016/J.Compbiolchem.2016.03.004  0.338
2015 Xie XJ, Hsu FN, Gao X, Xu W, Ni JQ, Xing Y, Huang L, Hsiao HC, Zheng H, Wang C, Zheng Y, Xiaoli AM, Yang F, Bondos SE, Ji JY. CDK8-Cyclin C Mediates Nutritional Regulation of Developmental Transitions through the Ecdysone Receptor in Drosophila. Plos Biology. 13: e1002207. PMID 26222308 DOI: 10.1371/Journal.Pbio.1002207  0.302
2015 Gao L, Ge H, Huang X, Liu K, Zhang Y, Xu W, Wang Y. Systematically ranking the tightness of membrane association for peripheral membrane proteins (PMPs). Molecular & Cellular Proteomics : McP. 14: 340-53. PMID 25505158 DOI: 10.1074/Mcp.M114.044800  0.445
2014 Xu W, Amire-Brahimi B, Xie XJ, Huang L, Ji JY. All-atomic molecular dynamic studies of human CDK8: insight into the A-loop, point mutations and binding with its partner CycC. Computational Biology and Chemistry. 51: 1-11. PMID 24754906 DOI: 10.1016/J.Compbiolchem.2014.03.003  0.311
2014 Sun J, Hao S, Radle M, Xu W, Shelaev I, Nadtochenko V, Shuvalov V, Semenov A, Gordon H, van der Est A, Golbeck JH. Evidence that histidine forms a coordination bond to the A(0A) and A(0B) chlorophylls and a second H-bond to the A(1A) and A(1B) phylloquinones in M688H(PsaA) and M668H(PsaB) variants of Synechocystis sp. PCC 6803. Biochimica Et Biophysica Acta. 1837: 1362-75. PMID 24747069 DOI: 10.1016/J.Bbabio.2014.04.004  0.34
2014 Gao L, Shen C, Liao L, Huang X, Liu K, Wang W, Guo L, Jin W, Huang F, Xu W, Wang Y. Functional proteomic discovery of Slr0110 as a central regulator of carbohydrate metabolism in Synechocystis species PCC6803. Molecular & Cellular Proteomics : McP. 13: 204-19. PMID 24169622 DOI: 10.1074/Mcp.M113.033803  0.457
2013 Hao S, Sun J, Xu W, van der Est A, Golbeck J. Selective Abolishment of Electron Transfer at A1 Site in Cyanobacterial Photosystem I with Minimal Structural Disturbance Biophysical Journal. 104: 653a. DOI: 10.1016/J.Bpj.2012.11.3608  0.413
2011 Xu W, Ji JY. Dysregulation of CDK8 and Cyclin C in tumorigenesis. Journal of Genetics and Genomics = Yi Chuan Xue Bao. 38: 439-52. PMID 22035865 DOI: 10.1016/J.Jgg.2011.09.002  0.302
2011 Xu W, Wang Y, Taylor E, Laujac A, Gao L, Savikhin S, Chitnis PR. Mutational analysis of photosystem I of Synechocystis sp. PCC 6803: the role of four conserved aromatic residues in the j-helix of PsaB. Plos One. 6: e24625. PMID 21931782 DOI: 10.1371/Journal.Pone.0024625  0.701
2009 Wang Y, Xu W, Chitnis PR. Identification and bioinformatic analysis of the membrane proteins of synechocystis sp. PCC 6803. Proteome Science. 7: 11. PMID 19320970 DOI: 10.1186/1477-5956-7-11  0.644
2006 Xu W, Fukuyama T, Ney PA, Wang D, Rehg J, Boyd K, van Deursen JM, Brindle PK. Global transcriptional coactivators CREB-binding protein and p300 are highly essential collectively but not individually in peripheral B cells. Blood. 107: 4407-16. PMID 16424387 DOI: 10.1182/Blood-2005-08-3263  0.308
2005 Dashdorj N, Xu W, Cohen RO, Golbeck JH, Savikhin S. Asymmetric electron transfer in cyanobacterial Photosystem I: charge separation and secondary electron transfer dynamics of mutations near the primary electron acceptor A0. Biophysical Journal. 88: 1238-49. PMID 15542554 DOI: 10.1529/Biophysj.104.050963  0.386
2004 Dashdorj N, Xu W, Martinsson P, Chitnis PR, Savikhin S. Electrochromic shift of chlorophyll absorption in photosystem I from Synechocystis sp. PCC 6803: a probe of optical and dielectric properties around the secondary electron acceptor. Biophysical Journal. 86: 3121-30. PMID 15111425 DOI: 10.1016/S0006-3495(04)74360-X  0.663
2004 Cohen RO, Shen G, Golbeck JH, Xu W, Chitnis PR, Valieva AI, van der Est A, Pushkar Y, Stehlik D. Evidence for asymmetric electron transfer in cyanobacterial photosystem I: analysis of a methionine-to-leucine mutation of the ligand to the primary electron acceptor A0. Biochemistry. 43: 4741-54. PMID 15096043 DOI: 10.1021/Bi035633F  0.654
2003 Xu W, Chitnis PR, Valieva A, van der Est A, Brettel K, Guergova-Kuras M, Pushkar YN, Zech SG, Stehlik D, Shen G, Zybailov B, Golbeck JH. Electron transfer in cyanobacterial photosystem I: II. Determination of forward electron transfer rates of site-directed mutants in a putative electron transfer pathway from A0 through A1 to FX. The Journal of Biological Chemistry. 278: 27876-87. PMID 12721306 DOI: 10.1074/Jbc.M302965200  0.671
2003 Xu W, Chitnis P, Valieva A, van der Est A, Pushkar YN, Krzystyniak M, Teutloff C, Zech SG, Bittl R, Stehlik D, Zybailov B, Shen G, Golbeck JH. Electron transfer in cyanobacterial photosystem I: I. Physiological and spectroscopic characterization of site-directed mutants in a putative electron transfer pathway from A0 through A1 to FX. The Journal of Biological Chemistry. 278: 27864-75. PMID 12721305 DOI: 10.1074/Jbc.M302962200  0.665
2002 Breton J, Xu W, Diner BA, Chitnis PR. The two histidine axial ligands of the primary electron donor chlorophylls (P700) in photosystem I are similarly perturbed upon P700+ formation. Biochemistry. 41: 11200-10. PMID 12220185 DOI: 10.1021/Bi0262404  0.643
2001 Xu W, Tang H, Wang Y, Chitnis PR. Proteins of the cyanobacterial photosystem I. Biochimica Et Biophysica Acta. 1507: 32-40. PMID 11687206 DOI: 10.1016/S0005-2728(01)00208-0  0.696
2001 Savikhin S, Xu W, Martinsson P, Chitnis PR, Struve WS. Kinetics of charge separation and A0- --> A1 electron transfer in photosystem I reaction centers. Biochemistry. 40: 9282-90. PMID 11478895 DOI: 10.1021/Bi0104165  0.671
2001 Golbeck J, Xu W, Zybailov B, Est Avd, Zech S, Stehlik D, Chitnis P. Electron transfer through the quinone acceptor in cyanobacterial Photosystem I Science Access. 3. DOI: 10.1071/Sa0403164  0.628
2000 Savikhin S, Xu W, Chitnis PR, Struve WS. Ultrafast primary processes in PS I from Synechocystis sp. PCC 6803: roles of P700 and A(0). Biophysical Journal. 79: 1573-86. PMID 10969018 DOI: 10.1016/S0006-3495(00)76408-3  0.66
1999 Sun J, Xu W, Hervás M, Navarro JA, Rosa MA, Chitnis PR. Oxidizing side of the cyanobacterial photosystem I. Evidence for interaction between the electron donor proteins and a luminal surface helix of the PsaB subunit. The Journal of Biological Chemistry. 274: 19048-54. PMID 10383406 DOI: 10.1074/jbc.274.27.19048  0.651
1999 Savikhin S, Xu W, Soukoulis V, Chitnis PR, Struve WS. Ultrafast primary processes in photosystem I of the cyanobacterium Synechocystis sp. PCC 6803. Biophysical Journal. 76: 3278-88. PMID 10354453 DOI: 10.1016/S0006-3495(99)77480-1  0.629
1999 Soukoulis V, Savikhin S, Xu W, Chitnis PR, Struve WS. Electronic spectra of PS I mutants: the peripheral subunits do not bind red chlorophylls in Synechocystis sp. PCC 6803. Biophysical Journal. 76: 2711-5. PMID 10233085 DOI: 10.1016/S0006-3495(99)77423-0  0.644
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