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Zhiao Shi, Ph.D. - Publications

Affiliations: 
2006 The University of Tennessee, Knoxville, TN, United States 
Area:
Computer Science
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, ... ... Shi Z, et al. Proteogenomic Characterization of Endometrial Carcinoma. Cell. PMID 32059776 DOI: 10.1016/J.Cell.2020.01.026  0.328
2019 Savage SR, Shi Z, Liao Y, Zhang B. Graph algorithms for condensing and consolidating gene set analysis results. Molecular & Cellular Proteomics : McP. PMID 31142576 DOI: 10.1074/Mcp.Tir118.001263  0.373
2019 Liao Y, Wang J, Jaehnig EJ, Shi Z, Zhang B. WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs. Nucleic Acids Research. PMID 31114916 DOI: 10.1093/Nar/Gkz401  0.341
2019 Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, Moore RJ, et al. Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities. Cell. PMID 31031003 DOI: 10.1016/J.Cell.2019.03.030  0.34
2019 Zhang B, Vasaikar S, Huang C, Wang X, Petyuk VA, Savage SR, Wen B, Dou Y, Zhang Y, Shi Z, Arshad OA, Gritsenko MA, Zimmerman LJ, McDermott JE, Clauss TR, et al. Abstract LB-006: Proteogenomic characterization of human colon cancer reveals new therapeutic opportunities Cancer Research. 79. DOI: 10.1158/1538-7445.Am2019-Lb-006  0.37
2017 Wang J, Mouradov D, Wang X, Jorissen RN, Chambers MC, Zimmerman LJ, Vasaikar S, Love CG, Li S, Lowes K, Leuchowius KJ, Jousset H, Weinstock J, Yau C, Mariadason J, ... Shi Z, et al. Colorectal cancer cell line proteomes are representative of primary tumors and predict drug sensitivity. Gastroenterology. PMID 28625833 DOI: 10.1053/J.Gastro.2017.06.008  0.301
2017 Wang J, Vasaikar S, Shi Z, Greer M, Zhang B. WebGestalt 2017: a more comprehensive, powerful, flexible and interactive gene set enrichment analysis toolkit. Nucleic Acids Research. PMID 28472511 DOI: 10.1093/Nar/Gkx356  0.37
2015 Zhu J, Shi Z, Wang J, Zhang B. Empowering biologists with multi-omics data: colorectal cancer as a paradigm. Bioinformatics (Oxford, England). 31: 1436-43. PMID 25527095 DOI: 10.1093/Bioinformatics/Btu834  0.349
2014 Tripathi MK, Deane NG, Zhu J, An H, Mima S, Wang X, Padmanabhan S, Shi Z, Prodduturi N, Ciombor KK, Chen X, Washington MK, Zhang B, Beauchamp RD. Nuclear factor of activated T-cell activity is associated with metastatic capacity in colon cancer. Cancer Research. 74: 6947-57. PMID 25320007 DOI: 10.1158/0008-5472.Can-14-1592  0.349
2014 Zhang B, Wang J, Wang X, Zhu J, Liu Q, Shi Z, Chambers MC, Zimmerman LJ, Shaddox KF, Kim S, Davies SR, Wang S, Wang P, Kinsinger CR, Rivers RC, et al. Proteogenomic characterization of human colon and rectal cancer. Nature. 513: 382-7. PMID 25043054 DOI: 10.1038/Nature13438  0.343
2013 Zhu J, Wang J, Shi Z, Franklin JL, Deane NG, Coffey RJ, Beauchamp RD, Zhang B. Deciphering genomic alterations in colorectal cancer through transcriptional subtype-based network analysis. Plos One. 8: e79282. PMID 24260186 DOI: 10.1371/Journal.Pone.0079282  0.346
2013 Shi Z, Wang J, Zhang B. NetGestalt: integrating multidimensional omics data over biological networks. Nature Methods. 10: 597-8. PMID 23807191 DOI: 10.1038/Nmeth.2517  0.373
2013 Wang J, Duncan D, Shi Z, Zhang B. WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013. Nucleic Acids Research. 41: W77-83. PMID 23703215 DOI: 10.1093/Nar/Gkt439  0.368
2012 Shi Z, Wang J, Zhang B. Abstract 3976: NetGestalt: A web application for the integration of multidimensional omics data within a network context Cancer Research. 72: 3976-3976. DOI: 10.1158/1538-7445.Am2012-3976  0.399
2011 Zhang B, Shi Z, Duncan DT, Prodduturi N, Marnett LJ, Liebler DC. Relating protein adduction to gene expression changes: a systems approach. Molecular Biosystems. 7: 2118-27. PMID 21594272 DOI: 10.1039/C1Mb05014A  0.309
2011 Shi Z, Zhang B. Fast network centrality analysis using GPUs. Bmc Bioinformatics. 12: 149. PMID 21569426 DOI: 10.1186/1471-2105-12-149  0.311
2010 Shi Z, Derow CK, Zhang B. Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression. Bmc Systems Biology. 4: 74. PMID 20507583 DOI: 10.1186/1752-0509-4-74  0.35
2006 Shi Z, Dongarra JJ. Scheduling workflow applications on processors with different capabilities Future Generation Computer Systems. 22: 665-675. DOI: 10.1016/J.Future.2005.11.002  0.421
2004 Cooper K, Dasgupta A, Kennedy K, Koelbel C, Mandal A, Marin G, Mazina M, Mellor-Crummey J, Berman F, Casanova H, Chien A, Dail H, Liu X, Olugbile A, Sievert O, ... ... Shi Z, et al. New grid scheduling and rescheduling methods in the GrADS project Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 2775-2782. DOI: 10.1007/S10766-005-3584-4  0.423
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