| Year |
Citation |
Score |
| 2024 |
Du J, Khemmani M, Halverson T, Ene A, Limeira R, Tinawi L, Hochstedler-Kramer BR, Noronha MF, Putonti C, Wolfe AJ. Cataloging the phylogenetic diversity of human bladder bacterial isolates. Genome Biology. 25: 75. PMID 38515176 DOI: 10.1186/s13059-024-03216-8 |
0.384 |
|
| 2024 |
Jablonska S, Kula A, Putonti C. Draft genome of O112, isolated from the cheek swab of a healthy female. Microbiology Resource Announcements. e0127123. PMID 38334402 DOI: 10.1128/mra.01271-23 |
0.361 |
|
| 2024 |
Steiling M, Jackson B, Stegman N, Sedano C, Putonti C. Draft genomes of UMB0908, UMB1545, and UMB5777 from the urinary tract. Microbiology Resource Announcements. e0112023. PMID 38265199 DOI: 10.1128/mra.01120-23 |
0.428 |
|
| 2023 |
Stegman N, Steiling M, Sedano C, Jackson B, Putonti C. Draft genome sequences of strains isolated from the female urinary tract. Microbiology Resource Announcements. e0112123. PMID 38133097 DOI: 10.1128/mra.01121-23 |
0.478 |
|
| 2023 |
Jackson B, Stegman N, Sedano C, Steiling M, Putonti C. Draft genome sequences of trains isolated from the female urinary tract. Microbiology Resource Announcements. e0112323. PMID 38132637 DOI: 10.1128/mra.01123-23 |
0.427 |
|
| 2023 |
Stegman N, Steiling M, Sedano C, Jackson B, Putonti C. Draft genome sequences of five strains isolated from voided urine samples. Microbiology Resource Announcements. e0111923. PMID 38132564 DOI: 10.1128/mra.01119-23 |
0.439 |
|
| 2023 |
Hochstedler-Kramer BR, Ene A, Putonti C, Wolfe AJ. Comparative genomic analysis of clinical Enterococcus faecalis distinguishes strains isolated from the bladder. Bmc Genomics. 24: 752. PMID 38062354 DOI: 10.1186/s12864-023-09818-z |
0.475 |
|
| 2023 |
Choi BI, Ene A, Du J, Johnson G, Putonti C, Schouw CH, Dargis R, Senneby E, Christensen JJ, Wolfe AJ. Taxonomic considerations on with proposal of subdivision into , sp. nov., sp. nov., and sp. nov. International Journal of Systematic and Evolutionary Microbiology. 73. PMID 37755156 DOI: 10.1099/ijsem.0.006066 |
0.407 |
|
| 2023 |
Ene A, Banerjee S, Wolfe AJ, Putonti C. Exploring the genotypic and phenotypic differences distinguishing and . Msphere. 8: e0056222. PMID 37366621 DOI: 10.1128/msphere.00562-22 |
0.454 |
|
| 2023 |
Du J, Khemmani M, Halverson T, Ene A, Limeira R, Tinawi L, Hochstedler-Kramer BR, Noronha MF, Putonti C, Wolfe AJ. Cataloging the Phylogenetic Diversity of Human Bladder Bacterial Isolates. Biorxiv : the Preprint Server For Biology. PMID 37292924 DOI: 10.1101/2023.05.23.541916 |
0.503 |
|
| 2023 |
Crum E, Merchant Z, Ene A, Miller-Ensminger T, Johnson G, Wolfe AJ, Putonti C. Coliphages of the human urinary microbiota. Plos One. 18: e0283930. PMID 37053131 DOI: 10.1371/journal.pone.0283930 |
0.394 |
|
| 2023 |
Miller-Ensminger T, Johnson G, Banerjee S, Putonti C. When Plaquing Is Not Possible: Computational Methods for Detecting Induced Phages. Viruses. 15. PMID 36851634 DOI: 10.3390/v15020420 |
0.42 |
|
| 2023 |
Prasad A, Ene A, Jablonska S, Du J, Wolfe AJ, Putonti C. Comparative Genomic Study of Streptococcus anginosus Reveals Distinct Group of Urinary Strains. Msphere. e0068722. PMID 36744899 DOI: 10.1128/msphere.00687-22 |
0.443 |
|
| 2022 |
Johnson G, Bataclan S, So M, Banerjee S, Wolfe AJ, Putonti C. Plasmids of the urinary microbiota. Access Microbiology. 4: acmi000429. PMID 36644432 DOI: 10.1099/acmi.0.000429 |
0.454 |
|
| 2022 |
Jablonska S, Wolfe AJ, Putonti C. Draft Genome Sequence of Staphylococcus epidermidis UMB7543, Isolated from a Female Patient with Recurrent Urinary Tract Infections. Microbiology Resource Announcements. 11: e0096222. PMID 36354363 DOI: 10.1128/mra.00962-22 |
0.434 |
|
| 2022 |
Montelongo C, Mores CR, Putonti C, Wolfe AJ, Abouelfetouh A. Whole-Genome Sequencing of and Clinical Isolates from Egypt. Microbiology Spectrum. e0241321. PMID 35727037 DOI: 10.1128/spectrum.02413-21 |
0.456 |
|
| 2022 |
Ene A, Stegman N, Wolfe A, Putonti C. Genomic insights into and . Peerj. 10: e13479. PMID 35694384 DOI: 10.7717/peerj.13479 |
0.412 |
|
| 2022 |
Montelongo Hernandez C, Putonti C, Wolfe AJ. Profiling the plasmid conjugation potential of urinary . Microbial Genomics. 8. PMID 35536743 DOI: 10.1099/mgen.0.000814 |
0.309 |
|
| 2022 |
Giannattasio-Ferraz S, Ene A, Johnson G, Maskeri L, Oliveira AP, Banerjee S, Barbosa-Stancioli EF, Putonti C. Multidrug-Resistant Klebsiella variicola Isolated in the Urine of Healthy Bovine Heifers, a Potential Risk as an Emerging Human Pathogen. Applied and Environmental Microbiology. e0004422. PMID 35416681 DOI: 10.1128/aem.00044-22 |
0.822 |
|
| 2022 |
Ene A, Putonti C. Draft Genome Assemblies of 4 Lactobacillus jensenii and 3 Lactobacillus mulieris Strains from the Urinary Tract. Microbiology Resource Announcements. 11: e0003222. PMID 35389247 DOI: 10.1128/mra.00032-22 |
0.492 |
|
| 2022 |
Giannattasio-Ferraz S, Ene A, Gomes VJ, Queiroz CO, Maskeri L, Oliveira AP, Putonti C, Barbosa-Stancioli EF. and Isolated From Urine of Healthy Bovine Have Potential as Emerging Human and Bovine Pathogens. Frontiers in Microbiology. 13: 764760. PMID 35330764 DOI: 10.3389/fmicb.2022.764760 |
0.811 |
|
| 2022 |
Johnson G, Banerjee S, Putonti C. Diversity of Pseudomonas aeruginosa Temperate Phages. Msphere. 7: e0101521. PMID 35196122 DOI: 10.1128/msphere.01015-21 |
0.487 |
|
| 2022 |
Dehlinger B, Jurss J, Lychuk K, Putonti C. The Dynamic Codon Biaser: calculating prokaryotic codon usage biases. Microbial Genomics. 7. PMID 34699346 DOI: 10.1099/mgen.0.000663 |
0.355 |
|
| 2021 |
Montelongo Hernandez C, Putonti C, Wolfe AJ. Characterizing Plasmids in Bacteria Species Relevant to Urinary Health. Microbiology Spectrum. 9: e0094221. PMID 34937183 DOI: 10.1128/spectrum.00942-21 |
0.407 |
|
| 2021 |
Shapiro JW, Putonti C. Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies. Peerj. 9: e11950. PMID 34434663 DOI: 10.7717/peerj.11950 |
0.411 |
|
| 2021 |
Giannattasio-Ferraz S, Ene A, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. , resident member of the urogenital microbiota? Microbiology (Reading, England). 167. PMID 34269674 DOI: 10.1099/mic.0.001068 |
0.825 |
|
| 2021 |
Mores CR, Montelongo C, Putonti C, Wolfe AJ, Abouelfetouh A. Investigation of Plasmids Among Clinical and Isolates From Egypt. Frontiers in Microbiology. 12: 659116. PMID 34149648 DOI: 10.3389/fmicb.2021.659116 |
0.359 |
|
| 2021 |
Mormando R, Wolfe AJ, Putonti C. Discriminating between JCPyV and BKPyV in Urinary Virome Data Sets. Viruses. 13. PMID 34072839 DOI: 10.3390/v13061041 |
0.405 |
|
| 2021 |
Putonti C, Thomas-White K, Crum E, Hilt EE, Price TK, Wolfe AJ. Genome Investigation of Urinary Strains and Their Relationship to Isolates of the Vaginal Microbiota. Msphere. 6. PMID 33980674 DOI: 10.1128/mSphere.00154-21 |
0.479 |
|
| 2021 |
Ene A, Miller-Ensminger T, Mores CR, Giannattasio-Ferraz S, Wolfe AJ, Abouelfetouh A, Putonti C. Examination of Prophages Circulating in Egypt. Viruses. 13. PMID 33671574 DOI: 10.3390/v13020337 |
0.406 |
|
| 2021 |
Mores CR, Price TK, Wolff B, Halverson T, Limeira R, Brubaker L, Mueller ER, Putonti C, Wolfe AJ. Genomic relatedness and clinical significance of strains isolated from the urogenital tract of sexual partners. Microbial Genomics. PMID 33629947 DOI: 10.1099/mgen.0.000535 |
0.347 |
|
| 2021 |
Giannattasio-Ferraz S, Ene A, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. Vagococcus fluvialis isolation and sequencing from urine of healthy cattle. G3 (Bethesda, Md.). 11. PMID 33561240 DOI: 10.1093/g3journal/jkaa034 |
0.834 |
|
| 2020 |
Garretto A, Miller-Ensminger T, Ene A, Merchant Z, Shah A, Gerodias A, Biancofiori A, Canchola S, Canchola S, Castillo E, Chowdhury T, Gandhi N, Hamilton S, Hatton K, Hyder S, ... ... Putonti C, et al. Genomic Survey of From the Bladders of Women With and Without Lower Urinary Tract Symptoms. Frontiers in Microbiology. 11: 2094. PMID 33013764 DOI: 10.3389/Fmicb.2020.02094 |
0.815 |
|
| 2020 |
Miller-Ensminger T, Garretto A, Stark N, Putonti C. Mimicking prophage induction in the body: induction in the lab with pH gradients. Peerj. 8: e9718. PMID 32944418 DOI: 10.7717/Peerj.9718 |
0.39 |
|
| 2020 |
Putonti C, Shapiro JW, Ene A, Tsibere O, Wolfe AJ. Comparative Genomic Study of Lactobacillus jensenii and the Newly Defined Lactobacillus mulieris Species Identifies Species-Specific Functionality. Msphere. 5. PMID 32817455 DOI: 10.1128/mSphere.00560-20 |
0.45 |
|
| 2020 |
Shapiro JW, Putonti C. UPΦ phages, a new group of filamentous phages found in several members of . Virus Evolution. 6: veaa030. PMID 32607251 DOI: 10.1093/Ve/Veaa030 |
0.503 |
|
| 2020 |
Miller-Ensminger T, Mormando R, Maskeri L, Shapiro JW, Wolfe AJ, Putonti C. Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract. Plos One. 15: e0234159. PMID 32525961 DOI: 10.1371/Journal.Pone.0234159 |
0.82 |
|
| 2020 |
Belmonte M, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Escherichia coli UMB9246, Isolated from the Bladder of a Woman with Recurrent Urinary Tract Infection. Microbiology Resource Announcements. 9. PMID 32499352 DOI: 10.1128/MRA.00437-20 |
0.473 |
|
| 2020 |
Truckenbrod A, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Staphylococcus epidermidis UMB8493, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32499349 DOI: 10.1128/MRA.00419-20 |
0.482 |
|
| 2020 |
Crawford T, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Escherichia coli UMB1353, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32499348 DOI: 10.1128/MRA.00416-20 |
0.506 |
|
| 2020 |
Scott T, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Streptococcus anginosus UMB0839, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32499347 DOI: 10.1128/MRA.00411-20 |
0.457 |
|
| 2020 |
Khan F, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Lactobacillus crispatus UMB1163, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32499346 DOI: 10.1128/MRA.00404-20 |
0.465 |
|
| 2020 |
Markovic T, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Actinomyces neuii UMB1295, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32499345 DOI: 10.1128/MRA.00402-20 |
0.484 |
|
| 2020 |
Schwartz A, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Enterococcus faecalis UMB1309, Isolated from Catheterized Urine. Microbiology Resource Announcements. 9. PMID 32467279 DOI: 10.1128/MRA.00406-20 |
0.511 |
|
| 2020 |
Kalski M, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Enterococcus faecalis UMB7780, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32467278 DOI: 10.1128/MRA.00400-20 |
0.468 |
|
| 2020 |
Eskandar S, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Corynebacterium aurimucosum UMB7769, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32467275 DOI: 10.1128/MRA.00391-20 |
0.471 |
|
| 2020 |
Miller S, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Streptococcus anginosus UMB7768, Isolated from a Woman with Recurrent UTI Symptoms. Microbiology Resource Announcements. 9. PMID 32439677 DOI: 10.1128/MRA.00418-20 |
0.512 |
|
| 2020 |
Rivera I, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Lactobacillus jensenii UMB0836, Isolated from the Female Bladder. Microbiology Resource Announcements. 9. PMID 32439676 DOI: 10.1128/MRA.00410-20 |
0.47 |
|
| 2020 |
Tsibere O, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Lactobacillus mulieris UMB7784, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32439675 DOI: 10.1128/MRA.00403-20 |
0.464 |
|
| 2020 |
Gallian N, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Proteus mirabilis Strain UMB0038, Isolated from the Female Bladder. Microbiology Resource Announcements. 9. PMID 32439674 DOI: 10.1128/MRA.00401-20 |
0.515 |
|
| 2020 |
Giannattasio-Ferraz S, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. Three Draft Genome Sequences of Species Isolated from the Urine of Healthy Bovine Heifers (Gyr Breed). Microbiology Resource Announcements. 9. PMID 32439673 DOI: 10.1128/MRA.00389-20 |
0.822 |
|
| 2020 |
Giannattasio-Ferraz S, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. Draft Genome Sequences of Three Enterococcus casseliflavus Strains Isolated from the Urine of Healthy Bovine Heifers (Gyr Breed). Microbiology Resource Announcements. 9. PMID 32439672 DOI: 10.1128/MRA.00386-20 |
0.816 |
|
| 2020 |
Giannattasio-Ferraz S, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. Draft Genome Sequence of Enterobacter asburiae UFMG-H9, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed). Microbiology Resource Announcements. 9. PMID 32439671 DOI: 10.1128/MRA.00385-20 |
0.834 |
|
| 2020 |
Salgado LM, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Streptococcus agalactiae UMB7782, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409558 DOI: 10.1128/MRA.00423-20 |
0.504 |
|
| 2020 |
Kemper L, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Staphylococcus epidermidis UMB7765, Isolated from the Urobiome of a Woman with Recurrent Urinary Tract Infection. Microbiology Resource Announcements. 9. PMID 32409557 DOI: 10.1128/MRA.00417-20 |
0.439 |
|
| 2020 |
Temelkova S, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Streptococcus anginosus UMB1296, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409556 DOI: 10.1128/MRA.00409-20 |
0.49 |
|
| 2020 |
Ramotowski L, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of UMB9245, Isolated from the Female Bladder. Microbiology Resource Announcements. 9. PMID 32409555 DOI: 10.1128/MRA.00408-20 |
0.479 |
|
| 2020 |
Purta N, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Antibiotic-Resistant Enterococcus faecalis Strain UMB0843, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409554 DOI: 10.1128/MRA.00407-20 |
0.449 |
|
| 2020 |
Gondi S, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Klebsiella pneumoniae UMB8492, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409553 DOI: 10.1128/MRA.00405-20 |
0.474 |
|
| 2020 |
Bhimalli P, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Klebsiella pneumoniae UMB7779, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409552 DOI: 10.1128/MRA.00396-20 |
0.519 |
|
| 2020 |
West-Pelak E, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Lactobacillus jensenii UMB0847, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409551 DOI: 10.1128/MRA.00395-20 |
0.421 |
|
| 2020 |
Ali Khan A, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Corynebacterium coyleae UMB8490, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409550 DOI: 10.1128/MRA.00393-20 |
0.454 |
|
| 2020 |
Miller-Ensminger T, Wolfe AJ, Putonti C. Draft Genome Sequence of Lactobacillus jensenii Strain UMB7766, Isolated from the Female Bladder. Microbiology Resource Announcements. 9. PMID 32409549 DOI: 10.1128/MRA.00392-20 |
0.47 |
|
| 2020 |
Allen O, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Proteus mirabilis UMB1310, Isolated from the Female Urinary Tract. Microbiology Resource Announcements. 9. PMID 32409548 DOI: 10.1128/MRA.00390-20 |
0.468 |
|
| 2020 |
Balce E, Miller-Ensminger T, Voukadinova A, Wolfe AJ, Putonti C. Draft Genome Sequence of Klebsiella pneumoniae UMB7783, Isolated from the Female Bladder. Microbiology Resource Announcements. 9. PMID 32381623 DOI: 10.1128/MRA.00394-20 |
0.504 |
|
| 2020 |
Giannattasio-Ferraz S, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. Draft Genome Sequence of Aeromonas caviae UFMG-H8, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed). Microbiology Resource Announcements. 9. PMID 32381622 DOI: 10.1128/MRA.00388-20 |
0.831 |
|
| 2020 |
Giannattasio-Ferraz S, Maskeri L, Oliveira AP, Barbosa-Stancioli EF, Putonti C. Draft Genome Sequence of Citrobacter freundii UFMG-H9, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed). Microbiology Resource Announcements. 9. PMID 32381621 DOI: 10.1128/MRA.00387-20 |
0.84 |
|
| 2020 |
Brassil B, Mores CR, Wolfe AJ, Putonti C. Characterization and spontaneous induction of urinary tract prophages. The Journal of General Virology. PMID 32310742 DOI: 10.1099/Jgv.0.001407 |
0.531 |
|
| 2020 |
Hilt EE, Putonti C, Thomas-White K, Lewis AL, Visick KL, Gilbert NM, Wolfe AJ. isolated from women with lower urinary tract symptoms: aggregation and genome analysis. Journal of Bacteriology. PMID 32284319 DOI: 10.1128/Jb.00170-20 |
0.546 |
|
| 2020 |
Mores CR, Price TK, Brassil B, Putonti C, Wolfe AJ. Complete Genome Sequences of Streptococcus mitis Strains Isolated from the Oral Cavity and Urogenital Tract of a Woman and Her Male Sexual Partner. Microbiology Resource Announcements. 9. PMID 31896651 DOI: 10.1128/MRA.01379-19 |
0.396 |
|
| 2020 |
Johnson G, Mores CR, Wolfe AJ, Putonti C. Draft Genome Sequences of Two Pseudomonas aeruginosa Isolates from the Female Urogenital Tract. Microbiology Resource Announcements. 9. PMID 31896650 DOI: 10.1128/MRA.01378-19 |
0.487 |
|
| 2019 |
Johnson G, Wolfe AJ, Putonti C. Characterization of the ϕCTX-like phage Dobby isolated from the kidney stone microbiota. Access Microbiology. 1. PMID 32864566 DOI: 10.1099/acmi.0.000002 |
0.504 |
|
| 2019 |
Johnson G, Stark N, Wolfe AJ, Putonti C. Complete Genome Sequence of a Pseudomonas aeruginosa Isolate from a Kidney Stone. Microbiology Resource Announcements. 8. PMID 31537684 DOI: 10.1128/MRA.01073-19 |
0.481 |
|
| 2019 |
Putonti C, Akhnoukh V, Anagnostopoulos Z, Bilek M, Colgan J, El Idrissi S, Magnuszewski K, Marino S, Szymulewski M, Tyahla M, Yanchuk V, Miller-Ensminger T, Batrich M, Brassil B, Mormando R, et al. Draft Genome Sequences of Six Lactobacillus gasseri and Three Strains Isolated from the Female Bladder. Microbiology Resource Announcements. 8. PMID 31515350 DOI: 10.1128/MRA.00973-19 |
0.519 |
|
| 2019 |
Putonti C, Ahmad A, Baddoo G, Diaz J, Do M, Gallian N, Lorentzen C, Mohammed H, Murphy J, Olu-Ajeigbe A, Yang T, Miller-Ensminger T, Stark N, Maskeri L, Van Dusen J, et al. Draft Genome Sequences of 11 Lactobacillus jensenii Strains Isolated from the Female Bladder. Microbiology Resource Announcements. 8. PMID 31467111 DOI: 10.1128/MRA.00970-19 |
0.826 |
|
| 2019 |
Johnson G, Putonti C. Genome Sequence of Phage UMP151, Isolated from the Female Bladder Microbiota. Microbiology Resource Announcements. 8. PMID 31416880 DOI: 10.1128/MRA.00853-19 |
0.499 |
|
| 2019 |
Garretto A, Miller-Ensminger T, Wolfe AJ, Putonti C. Bacteriophages of the lower urinary tract. Nature Reviews. Urology. PMID 31073244 DOI: 10.1038/S41585-019-0192-4 |
0.413 |
|
| 2019 |
Zilliox MJ, Schreckenberger PC, Putonti C. Draft Genome Sequence of Clinical Isolate sp. Strain 429. Microbiology Resource Announcements. 8. PMID 31072889 DOI: 10.1128/MRA.00439-19 |
0.441 |
|
| 2019 |
Garretto A, Hatzopoulos T, Putonti C. virMine: automated detection of viral sequences from complex metagenomic samples. Peerj. 7: e6695. PMID 30993039 DOI: 10.7717/Peerj.6695 |
0.501 |
|
| 2019 |
Batrich M, Maskeri L, Schubert R, Ho B, Kohout M, Abdeljaber M, Abuhasna A, Kholoki M, Psihogios P, Razzaq T, Sawhney S, Siddiqui S, Xoubi E, Cooper A, Hatzopoulos T, ... Putonti C, et al. Diversity Within Urban Freshwaters. Frontiers in Microbiology. 10: 195. PMID 30828321 DOI: 10.3389/Fmicb.2019.00195 |
0.809 |
|
| 2019 |
Johnson G, Wolfe AJ, Putonti C. Characterization of the φCTX-like Pseudomonas aeruginosa phage Dobby isolated from the kidney stone microbiota Access Microbiology. 1. DOI: 10.1099/ACMI.0.000002 |
0.306 |
|
| 2018 |
Kooistra RL, David R, Ruiz AC, Powers SW, Haselton KJ, Kiernan K, Blagborough AM, Solamen L, Olsen KW, Putonti C, Kanzok SM. Characterization of a protozoan Phosducin-like protein-3 (PhLP-3) reveals conserved redox activity. Plos One. 13: e0209699. PMID 30596727 DOI: 10.1371/Journal.Pone.0209699 |
0.302 |
|
| 2018 |
Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, ... ... Putonti C, et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. PMID 30556814 DOI: 10.1038/Nbt.4306 |
0.481 |
|
| 2018 |
Kalesinskas L, Cudone E, Fofanov Y, Putonti C. S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences. Evolutionary Bioinformatics Online. 14: 1176934318797354. PMID 30245567 DOI: 10.1177/1176934318797354 |
0.733 |
|
| 2018 |
Watkins SC, Sible E, Putonti C. PB1-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages. Viruses. 10. PMID 29914169 DOI: 10.3390/V10060331 |
0.519 |
|
| 2018 |
Garretto A, Thomas-White K, Wolfe AJ, Putonti C. Detecting viral genomes in the female urinary microbiome. The Journal of General Virology. PMID 29889019 DOI: 10.1099/Jgv.0.001097 |
0.519 |
|
| 2018 |
Kula A, Saelens J, Cox J, Schubert AM, Travisano M, Putonti C. The Evolution of Molecular Compatibility between Bacteriophage ΦX174 and its Host. Scientific Reports. 8: 8350. PMID 29844443 DOI: 10.1038/S41598-018-25914-7 |
0.666 |
|
| 2018 |
Thomas-White K, Forster SC, Kumar N, Van Kuiken M, Putonti C, Stares MD, Hilt EE, Price TK, Wolfe AJ, Lawley TD. Culturing of female bladder bacteria reveals an interconnected urogenital microbiota. Nature Communications. 9: 1557. PMID 29674608 DOI: 10.1038/S41467-018-03968-5 |
0.575 |
|
| 2018 |
Shapiro JW, Putonti C. Gene Co-occurrence Networks Reflect Bacteriophage Ecology and Evolution. Mbio. 9. PMID 29559574 DOI: 10.1128/Mbio.01870-17 |
0.385 |
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| 2018 |
Castignetti D, Polley N, Putonti C. Draft Genome Sequence of the Siderophore-Degrading Soil BacteriumStrain LU. Genome Announcements. 6. PMID 29439037 DOI: 10.1128/Genomea.00029-18 |
0.46 |
|
| 2018 |
Putonti C, Polley N, Castignetti D. Draft Genome Sequence of an Active Heterotrophic Nitrifier-Denitrifier,UM1. Genome Announcements. 6. PMID 29439036 DOI: 10.1128/Genomea.00028-18 |
0.503 |
|
| 2018 |
Miller-Ensminger T, Garretto A, Brenner J, Thomas-White K, Zambom A, Wolfe AJ, Putonti C. BACTERIOPHAGES OF THE URINARY MICROBIOME. Journal of Bacteriology. PMID 29378882 DOI: 10.1128/Jb.00738-17 |
0.564 |
|
| 2017 |
Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequence of Staphylococcus epidermidis (Winslow and Winslow) Evans (ATCC 14990). Genome Announcements. 5. PMID 28684584 DOI: 10.1128/Genomea.00619-17 |
0.534 |
|
| 2017 |
Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequences of Two ATCC Staphylococcus aureus subsp. aureus Strains. Genome Announcements. 5. PMID 28684583 DOI: 10.1128/Genomea.00618-17 |
0.543 |
|
| 2017 |
Putonti C, Cudone E, Kalesinskas L, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequence of Micrococcus luteus (Schroeter) Cohn (ATCC 12698). Genome Announcements. 5. PMID 28684577 DOI: 10.1128/Genomea.00576-17 |
0.531 |
|
| 2017 |
Putonti C, Kalesinskas L, Cudone E, Engelbrecht KC, Koenig DW, Wolfe AJ. Draft Genome Sequence of Enterococcus faecalis ATCC BAA-2128. Genome Announcements. 5. PMID 28684576 DOI: 10.1128/Genomea.00575-17 |
0.581 |
|
| 2017 |
Engelbrecht KC, Putonti C, Koenig DW, Wolfe AJ. Draft Genome Sequence of Escherichia coli K-12 (ATCC 29425). Genome Announcements. 5. PMID 28684575 DOI: 10.1128/Genomea.00574-17 |
0.517 |
|
| 2017 |
Dimitrova D, Engelbrecht KC, Putonti C, Koenig DW, Wolfe AJ. Draft Genome Sequence of Escherichia coli K-12 (ATCC 10798). Genome Announcements. 5. PMID 28684574 DOI: 10.1128/Genomea.00573-17 |
0.506 |
|
| 2017 |
Watkins SC, Putonti C. The use of informativity in the development of robust viromics-based examinations. Peerj. 5: e3281. PMID 28480148 DOI: 10.7717/Peerj.3281 |
0.429 |
|
| 2016 |
Hatzopoulos T, Watkins SC, Putonti C. PhagePhisher: a pipeline for the discovery of covert viral sequences in complex genomic datasets. Microbial Genomics. 2: e000053. PMID 28348848 DOI: 10.1099/mgen.0.000053 |
0.39 |
|
| 2016 |
Price TK, Shaheen M, Kalesinskas L, Malki K, Hilt EE, Putonti C, Wolfe AJ. Draft Genome Sequence of a Urinary Isolate of Lactobacillus crispatus. Genome Announcements. 4. PMID 27908986 DOI: 10.1128/Genomea.01278-16 |
0.56 |
|
| 2016 |
Malki K, Sible E, Cooper A, Garretto A, Bruder K, Watkins SC, Putonti C. Seven Bacteriophages Isolated from the Female Urinary Microbiota. Genome Announcements. 4. PMID 27881533 DOI: 10.1128/Genomea.01003-16 |
0.501 |
|
| 2016 |
Malki K, Shapiro JW, Price TK, Hilt EE, Thomas-White K, Sircar T, Rosenfeld AB, Kuffel G, Zilliox MJ, Wolfe AJ, Putonti C. Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome. Plos One. 11: e0166757. PMID 27861551 DOI: 10.1371/Journal.Pone.0166757 |
0.606 |
|
| 2016 |
Hilt EE, Price TK, Diebel K, Putonti C, Wolfe AJ. Draft Genome Sequence for a Urinary Isolate of Nosocomiicoccus ampullae. Genome Announcements. 4. PMID 27856579 DOI: 10.1128/Genomea.01248-16 |
0.536 |
|
| 2016 |
Price TK, Mehrtash A, Kalesinskas L, Malki K, Hilt EE, Putonti C, Wolfe AJ. Genome sequences and annotation of two urinary isolates of E. coli. Standards in Genomic Sciences. 11: 79. PMID 27777649 DOI: 10.1186/S40793-016-0202-6 |
0.502 |
|
| 2016 |
Ziccardi W, Zhao C, Shepelev V, Uralsky L, Alexandrov I, Andreeva T, Rogaev E, Bun C, Miller E, Putonti C, Doering J. Clusters of alpha satellite on human chromosome 21 are dispersed far onto the short arm and lack ancient layers. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 27430641 DOI: 10.1007/S10577-016-9530-Z |
0.303 |
|
| 2016 |
Bruder K, Malki K, Cooper A, Sible E, Shapiro JW, Watkins SC, Putonti C. Freshwater Metaviromics and Bacteriophages: A Current Assessment of the State of the Art in Relation to Bioinformatic Challenges. Evolutionary Bioinformatics Online. 12: 25-33. PMID 27375355 DOI: 10.4137/Ebo.S38549 |
0.376 |
|
| 2016 |
Searle D, Sible E, Cooper A, Putonti C. 18S rDNA dataset profiling microeukaryotic populations within Chicago area nearshore waters. Data in Brief. 6: 526-9. PMID 26904716 DOI: 10.1016/J.Dib.2015.12.042 |
0.356 |
|
| 2016 |
Reisman S, Hatzopoulos T, Läufer K, Thiruvathukal GK, Putonti C. A Polyglot Approach to Bioinformatics Data Integration: A Phylogenetic Analysis of HIV-1. Evolutionary Bioinformatics Online. 12: 23-7. PMID 26819543 DOI: 10.4137/Ebo.S32757 |
0.387 |
|
| 2016 |
Watkins SC, Kuehnle N, Ruggeri CA, Malki K, Bruder K, Elayyan J, Damisch K, Vahora N, O'Malley P, Ruggles-Sage B, Romer Z, Putonti C. Assessment of a metaviromic dataset generated from nearshore Lake Michigan Marine and Freshwater Research. 67: 1700. DOI: 10.1071/Mf15172 |
0.401 |
|
| 2015 |
Malki K, Bruder K, Putonti C. Survey of microbial populations within Lake Michigan nearshore waters at two Chicago public beaches. Data in Brief. 5: 556-9. PMID 26958608 DOI: 10.1016/J.Dib.2015.10.005 |
0.373 |
|
| 2015 |
Sible E, Cooper A, Malki K, Bruder K, Hatzopoulos T, Watkins SC, Putonti C. Assessment of microbial populations within Chicago area nearshore waters and interfaces with river systems. Data in Brief. 5: 305-8. PMID 26566540 DOI: 10.1016/J.Dib.2015.09.004 |
0.343 |
|
| 2015 |
Malki K, Kula A, Bruder K, Sible E, Hatzopoulos T, Steidel S, Watkins SC, Putonti C. Bacteriophages isolated from Lake Michigan demonstrate broad host-range across several bacterial phyla. Virology Journal. 12: 164. PMID 26453042 DOI: 10.1186/S12985-015-0395-0 |
0.429 |
|
| 2015 |
Sible E, Cooper A, Malki K, Bruder K, Watkins SC, Fofanov Y, Putonti C. Survey of viral populations within Lake Michigan nearshore waters at four Chicago area beaches. Data in Brief. 5: 9-12. PMID 26380839 DOI: 10.1016/J.Dib.2015.08.001 |
0.654 |
|
| 2013 |
Putonti C, Nowicki B, Shaffer M, Fofanov Y, Nowicki S. Where does Neisseria acquire foreign DNA from: an examination of the source of genomic and pathogenic islands and the evolution of the Neisseria genus. Bmc Evolutionary Biology. 13: 184. PMID 24007216 DOI: 10.1186/1471-2148-13-184 |
0.75 |
|
| 2013 |
Putonti C, Quach B, Kooistra RL, Kanzok SM. The evolution and putative function of phosducin-like proteins in the malaria parasite Plasmodium. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 13: 49-55. PMID 22995278 DOI: 10.1016/J.Meegid.2012.08.023 |
0.307 |
|
| 2012 |
Hilterbrand A, Saelens J, Putonti C. CBDB: the codon bias database. Bmc Bioinformatics. 13: 62. PMID 22536831 DOI: 10.1186/1471-2105-13-62 |
0.439 |
|
| 2012 |
Bun C, Ziccardi W, Doering J, Putonti C. MiIP: The Monomer Identification and Isolation Program Evolutionary Bioinformatics. 2012: 293-300. DOI: 10.4137/Ebo.S9248 |
0.463 |
|
| 2011 |
Gijavanekar C, Añez-Lingerfelt M, Feng C, Putonti C, Fox GE, Sabo A, Fofanov Y, Willson RC. PCR detection of nearly any dengue virus strain using a highly sensitive primer 'cocktail'. The Febs Journal. 278: 1676-87. PMID 21410643 DOI: 10.1111/J.1742-4658.2011.08091.X |
0.656 |
|
| 2011 |
Reynoso V, Putonti C. Mapping short sequencing reads to distant relatives 2011 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2011. 420-424. DOI: 10.1145/2147805.2147862 |
0.308 |
|
| 2010 |
Colborn JM, Kosoy MY, Motin VL, Telepnev MV, Valbuena G, Myint KS, Fofanov Y, Putonti C, Feng C, Peruski L. Improved detection of Bartonella DNA in mammalian hosts and arthropod vectors by real-time PCR using the NADH dehydrogenase gamma subunit (nuoG). Journal of Clinical Microbiology. 48: 4630-3. PMID 20926707 DOI: 10.1128/Jcm.00470-10 |
0.661 |
|
| 2010 |
Cox J, Schubert AM, Travisano M, Putonti C. Adaptive evolution and inherent tolerance to extreme thermal environments. Bmc Evolutionary Biology. 10: 75. PMID 20226044 DOI: 10.1186/1471-2148-10-75 |
0.595 |
|
| 2010 |
Cox J, Putonti C. Mechanisms responsible for a PhiX174 mutant's ability to infect Escherichia coli by phosphorylation. Journal of Virology. 84: 4860-3. PMID 20147402 DOI: 10.1128/Jvi.00047-10 |
0.353 |
|
| 2010 |
Schubert AM, Putonti C. Evolution of the sequence composition of Flaviviruses. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 10: 129-36. PMID 19914402 DOI: 10.1016/J.Meegid.2009.11.004 |
0.46 |
|
| 2009 |
Feng C, Putonti C, Zhang M, Eggers R, Mitra R, Hogan M, Jayaraman K, Fofanov Y. Ultraspecific probes for high throughput HLA typing. Bmc Genomics. 10: 85. PMID 19232123 DOI: 10.1186/1471-2164-10-85 |
0.669 |
|
| 2008 |
Alcaraz LD, Olmedo G, Bonilla G, Cerritos R, Hernández G, Cruz A, RamÃrez E, Putonti C, Jiménez B, MartÃnez E, López V, Arvizu JL, Ayala F, Razo F, Caballero J, et al. The genome of Bacillus coahuilensis reveals adaptations essential for survival in the relic of an ancient marine environment. Proceedings of the National Academy of Sciences of the United States of America. 105: 5803-8. PMID 18408155 DOI: 10.1073/Pnas.0800981105 |
0.538 |
|
| 2008 |
Añez M, Putonti C, Fox GE, Fofanov Y, Willson RC. Exhaustive computational identification of pathogen sequences far-distant from background genomes: Identification and experimental verification of human-blind dengue PCR primers. Journal of Biotechnology. 133: 267-76. PMID 17996971 DOI: 10.1016/J.Jbiotec.2007.09.007 |
0.717 |
|
| 2007 |
Putonti C, Pettitt B, Reid J, Fofanov Y. PIDA:A new algorithm for pattern identification. Online Journal of Bioinformatics : Ojb. 8: 30-40. PMID 19834570 |
0.577 |
|
| 2007 |
Reed C, Fofanov V, Putonti C, Chumakov S, Slezak T, Fofanov Y. Effect of the mutation rate and background size on the quality of pathogen identification. Bioinformatics (Oxford, England). 23: 2665-71. PMID 17881407 DOI: 10.1093/Bioinformatics/Btm420 |
0.653 |
|
| 2007 |
Putonti C, Meizhuo Z, Johnsson L, Fofanov Y. Two challenges in genomics that can benefit from petascale platforms Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4375: 313-322. |
0.676 |
|
| 2006 |
Putonti C, Luo Y, Katili C, Chumakov S, Fox GE, Graur D, Fofanov Y. A computational tool for the genomic identification of regions of unusual compositional properties and its utilization in the detection of horizontally transferred sequences. Molecular Biology and Evolution. 23: 1863-8. PMID 16829541 DOI: 10.1093/Molbev/Msl053 |
0.729 |
|
| 2006 |
Putonti C, Chumakov S, Mitra R, Fox GE, Willson RC, Fofanov Y. Human-blind probes and primers for dengue virus identification. The Febs Journal. 273: 398-408. PMID 16403026 DOI: 10.1111/J.1742-4658.2005.05074.X |
0.764 |
|
| 2006 |
Putonti C, Chumakov S, Chavez A, Luo Y, Graur D, Fox GE, Fofanov Y. Regions of unusual statistical properties as tools in the search for horizontally transferred genes in Escherichia coli Aip Conference Proceedings. 854: 126-128. DOI: 10.1063/1.2356423 |
0.579 |
|
| 2006 |
Zhang M, Putonti C, Chumakov S, Gupta A, Fox GE, Graur D, Fofanov Y. Statistical properties of short subsequences in microbial genomes and their link to pathogen identification and evolution Aip Conference Proceedings. 854: 13-18. DOI: 10.1063/1.2356390 |
0.762 |
|
| 2005 |
Chumakov S, Belapurkar C, Putonti C, Li TB, Pettitt BM, Fox GE, Willson RC, Fofanov Y. The theoretical basis of universal identification systems for bacteria and viruses. Journal of Biological Physics and Chemistry : Jbpc. 5: 121-128. PMID 20428334 DOI: 10.4024/40501.Jbpc.05.04 |
0.731 |
|
| 2004 |
Putonti C, Fofanov Y. Analysis of promoter regions for essential genes of bacillus subtilis using PIDA Proceedings of the International Conference On Mathematics and Engineering Techniques in Medicine and Biological Sciences, Metmbs'04. 276-282. |
0.561 |
|
| 2004 |
Chumakov S, Putonti C, Pettitt BM, Fox G, Willson RC, Fofanov Y. Using statistical properties of short subsequences in microbial identification Proceedings of the International Conference On Mathematics and Engineering Techniques in Medicine and Biological Sciences, Metmbs'04. 363-367. |
0.577 |
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