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Zachary A. Lewis, Ph.D. - Publications

Affiliations: 
2004 Texas A & M University, College Station, TX, United States 
Area:
Microbiology Biology, Molecular Biology, Genetics
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Ameri AJ, Lewis ZA. Shannon Entropy as a metric for conditional gene expression in Neurospora crassa. G3 (Bethesda, Md.). PMID 33751112 DOI: 10.1093/g3journal/jkab055  0.347
2021 Kamei M, Ameri AJ, Ferraro AR, Bar-Peled Y, Zhao F, Ethridge CL, Lail K, Amirebrahimi M, Lipzen A, Ng V, Grigoriev IV, Schmitz RJ, Liu Y, Lewis ZA. IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33468665 DOI: 10.1073/pnas.2010003118  0.312
2020 Courtney AJ, Kamei M, Ferraro AR, Gai K, He Q, Honda S, Lewis ZA. Normal Patterns of Histone H3K27 Methylation Require the Histone Variant H2A.Z in . Genetics. PMID 32651262 DOI: 10.1534/Genetics.120.303442  0.311
2019 Schmitz RJ, Lewis ZA, Goll MG. DNA Methylation: Shared and Divergent Features across Eukaryotes. Trends in Genetics : Tig. PMID 31399242 DOI: 10.1016/J.Tig.2019.07.007  0.319
2019 Laue K, Rajshekar S, Courtney AJ, Lewis ZA, Goll MG. The maternal to zygotic transition regulates genome-wide heterochromatin establishment in the zebrafish embryo. Nature Communications. 10: 1551. PMID 30948728 DOI: 10.1038/S41467-019-09582-3  0.301
2018 Ferraro AR, Lewis ZA. ChIP-Seq Analysis in Neurospora crassa. Methods in Molecular Biology (Clifton, N.J.). 1775: 241-250. PMID 29876822 DOI: 10.1007/978-1-4939-7804-5_19  0.339
2017 Lewis ZA. Polycomb Group Systems in Fungi: New Models for Understanding Polycomb Repressive Complex 2. Trends in Genetics : Tig. PMID 28196760 DOI: 10.1016/J.Tig.2017.01.006  0.344
2016 Gacek-Matthews A, Berger H, Sasaki T, Wittstein K, Gruber C, Lewis ZA, Strauss J. KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. Plos Genetics. 12: e1006222. PMID 27548260 DOI: 10.1371/Journal.Pgen.1006222  0.411
2016 Seymour M, Ji L, Santos AM, Kamei M, Sasaki T, Basenko EY, Schmitz RJ, Zhang X, Lewis ZA. Histone H1 Limits DNA Methylation in Neurospora crassa. G3 (Bethesda, Md.). PMID 27172195 DOI: 10.1534/G3.116.028324  0.339
2016 Basenko EY, Kamei M, Ji L, Schmitz RJ, Lewis ZA. The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa. Plos Genetics. 12: e1005790. PMID 26771905 DOI: 10.1371/Journal.Pgen.1005790  0.31
2015 Basenko EY, Sasaki T, Ji L, Prybol CJ, Burckhardt RM, Schmitz RJ, Lewis ZA. Genome-wide redistribution of H3K27me3 is linked to genotoxic stress and defective growth. Proceedings of the National Academy of Sciences of the United States of America. 112: E6339-E6348. PMID 26578794 DOI: 10.1073/Pnas.1511377112  0.322
2015 Adhvaryu KK, Gessaman JD, Honda S, Lewis ZA, Grisafi PL, Selker EU. The cullin-4 complex DCDC does not require E3 ubiquitin ligase elements to control heterochromatin in Neurospora crassa. Eukaryotic Cell. 14: 25-8. PMID 25362134 DOI: 10.1128/Ec.00212-14  0.322
2014 Sasaki T, Lynch KL, Mueller CV, Friedman S, Freitag M, Lewis ZA. Heterochromatin controls γH2A localization in Neurospora crassa. Eukaryotic Cell. 13: 990-1000. PMID 24879124 DOI: 10.1128/Ec.00117-14  0.316
2013 Jamieson K, Rountree MR, Lewis ZA, Stajich JE, Selker EU. Regional control of histone H3 lysine 27 methylation in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 110: 6027-32. PMID 23530226 DOI: 10.1073/Pnas.1303750110  0.425
2012 Honda S, Lewis ZA, Shimada K, Fischle W, Sack R, Selker EU. Heterochromatin protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation. Nature Structural & Molecular Biology. 19: 471-7, S1. PMID 22504884 DOI: 10.1038/Nsmb.2274  0.301
2011 Belden WJ, Lewis ZA, Selker EU, Loros JJ, Dunlap JC. CHD1 remodels chromatin and influences transient DNA methylation at the clock gene frequency. Plos Genetics. 7: e1002166. PMID 21811413 DOI: 10.1371/Journal.Pgen.1002166  0.505
2010 Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Knip M, Sack R, Selker EU. DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferase complex, DCDC. Plos Genetics. 6: e1001196. PMID 21079689 DOI: 10.1371/Journal.Pgen.1001196  0.351
2010 Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Selker EU. Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin. Proceedings of the National Academy of Sciences of the United States of America. 107: 8310-5. PMID 20404183 DOI: 10.1073/Pnas.1000328107  0.364
2010 Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y, Selker EU. The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa. Genes & Development. 24: 443-54. PMID 20139222 DOI: 10.1101/Gad.1893210  0.341
2009 Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schübeler D, Selker EU. Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa. Genome Research. 19: 427-37. PMID 19092133 DOI: 10.1101/Gr.086231.108  0.326
2007 Lewis ZA, Shiver AL, Stiffler N, Miller MR, Johnson EA, Selker EU. High-density detection of restriction-site-associated DNA markers for rapid mapping of mutated loci in Neurospora. Genetics. 177: 1163-71. PMID 17660537 DOI: 10.1534/Genetics.107.078147  0.332
2006 de Paula RM, Lewis ZA, Greene AV, Seo KS, Morgan LW, Vitalini MW, Bennett L, Gomer RH, Bell-Pedersen D. Two circadian timing circuits in Neurospora crassa cells share components and regulate distinct rhythmic processes. Journal of Biological Rhythms. 21: 159-68. PMID 16731655 DOI: 10.1177/0748730406288338  0.678
2004 Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, Ebbole DJ. Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genetics and Biology : Fg & B. 41: 1104-19. PMID 15531214 DOI: 10.1016/J.Fgb.2004.08.009  0.682
2003 Correa A, Lewis ZA, Greene AV, March IJ, Gomer RH, Bell-Pedersen D. Multiple oscillators regulate circadian gene expression in Neurospora. Proceedings of the National Academy of Sciences of the United States of America. 100: 13597-602. PMID 14597725 DOI: 10.1073/Pnas.2233734100  0.742
2003 Correa A, Greene AV, Lewis ZA, Bell-Pedersen D. Molecular genetics of circadian rhythms in neurospora crassa Applied Mycology and Biotechnology. 3: 43-63. DOI: 10.1016/S1874-5334(03)80006-0  0.728
2002 Lewis ZA, Correa A, Schwerdtfeger C, Link KL, Xie X, Gomer RH, Thomas T, Ebbole DJ, Bell-Pedersen D. Overexpression of White Collar-1 (WC-1) activates circadian clock-associated genes, but is not sufficient to induce most light-regulated gene expression in Neurospora crassa. Molecular Microbiology. 45: 917-31. PMID 12180913 DOI: 10.1046/J.1365-2958.2002.03074.X  0.737
2001 Bell-Pedersen D, Lewis ZA, Loros JJ, Dunlap JC. The Neurospora circadian clock regulates a transcription factor that controls rhythmic expression of the output eas(ccg-2) gene. Molecular Microbiology. 41: 897-909. PMID 11532152 DOI: 10.1046/J.1365-2958.2001.02558.X  0.728
2001 Shrode LB, Lewis ZA, White LD, Bell-Pedersen D, Ebbole DJ. vvd is required for light adaptation of conidiation-specific genes of Neurospora crassa, but not circadian conidiation. Fungal Genetics and Biology : Fg & B. 32: 169-81. PMID 11343403 DOI: 10.1006/Fgbi.2001.1264  0.711
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