| Year |
Citation |
Score |
| 2023 |
Hewavitharana P, Schensul S, Lee E, Montez-Rath M, Senarathne S, Liu S, Harold K, Hewapathiranage S, Erandika N, Abeysundara HTK, Yu X, Bhalla V, Fire A, Levin A, Anand S, et al. Describing Natural History and Exploring Risk Factors for Kidney Function Decline in Persons With CKD of Uncertain Etiology in Sri Lanka. Kidney International Reports. 8: 1430-1438. PMID 37441476 DOI: 10.1016/j.ekir.2023.04.010 |
0.2 |
|
| 2023 |
Wang W, Artiles KL, Machida S, Benkirane M, Jain N, Fire AZ. Combined direct/indirect detection allows identification of DNA termini in diverse sequencing datasets and supports a multiple-initiation-site model for HIV plus-strand synthesis. Biorxiv : the Preprint Server For Biology. PMID 37398293 DOI: 10.1101/2023.06.12.544617 |
0.383 |
|
| 2023 |
McCoy MJ, Fire AZ. Ancient origins of complex neuronal genes. Biorxiv : the Preprint Server For Biology. PMID 37034725 DOI: 10.1101/2023.03.28.534655 |
0.307 |
|
| 2022 |
Enam SU, Cherry JL, Leonard SR, Zheludev IN, Lipman DJ, Fire AZ. Restriction Endonuclease-Based Modification-Dependent Enrichment (REMoDE) of DNA for Metagenomic Sequencing. Applied and Environmental Microbiology. e0167022. PMID 36519847 DOI: 10.1128/aem.01670-22 |
0.363 |
|
| 2022 |
Hall RN, Weill U, Drees L, Leal-Ortiz S, Li H, Khariton M, Chai C, Xue Y, Rosental B, Quake SR, Sánchez Alvarado A, Melosh NA, Fire AZ, Rink JC, Wang B. Heterologous reporter expression in the planarian through somatic mRNA transfection. Cell Reports Methods. 2: 100298. PMID 36313809 DOI: 10.1016/j.crmeth.2022.100298 |
0.33 |
|
| 2022 |
Takahashi Y, Shoura M, Fire A, Morishita S. Context-dependent DNA polymerization effects can masquerade as DNA modification signals. Bmc Genomics. 23: 249. PMID 35361121 DOI: 10.1186/s12864-022-08471-2 |
0.75 |
|
| 2021 |
Chen JA, Hou Y, Roskin KM, Arber DA, Bangs CD, Baughn LB, Cherry AM, Ewalt MD, Fire AZ, Fresard L, Kearney HM, Montgomery SB, Ohgami RS, Pearce KE, Pitel BA, et al. Lymphoid blast transformation in an MPN with BCR-JAK2 treated with ruxolitinib: putative mechanisms of resistance. Blood Advances. 5: 3492-3496. PMID 34505882 DOI: 10.1182/bloodadvances.2020004174 |
0.397 |
|
| 2021 |
Wahba L, Hansen L, Fire AZ. An essential role for the piRNA pathway in regulating the ribosomal RNA pool in C. elegans. Developmental Cell. PMID 34388368 DOI: 10.1016/j.devcel.2021.07.014 |
0.808 |
|
| 2020 |
Vishnupriya R, Thomas L, Wahba L, Fire A, Subramaniam K. PLP-1 is essential for germ cell development and germline gene silencing in . Development (Cambridge, England). PMID 33051256 DOI: 10.1242/dev.195578 |
0.802 |
|
| 2020 |
Wolf YI, Silas S, Wang Y, Wu S, Bocek M, Kazlauskas D, Krupovic M, Fire A, Dolja VV, Koonin EV. Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome. Nature Microbiology. PMID 32690954 DOI: 10.1038/S41564-020-0755-4 |
0.468 |
|
| 2020 |
McCoy MJ, Fire AZ. Intron and gene size expansion during nervous system evolution. Bmc Genomics. 21: 360. PMID 32410625 DOI: 10.1186/S12864-020-6760-4 |
0.414 |
|
| 2020 |
Wahba L, Jain N, Fire AZ, Shoura MJ, Artiles KL, McCoy MJ, Jeong DE. An Extensive Meta-Metagenomic Search Identifies SARS-CoV-2-Homologous Sequences in Pangolin Lung Viromes. Msphere. 5. PMID 32376697 DOI: 10.1128/mSphere.00160-20 |
0.748 |
|
| 2020 |
Jain N, Blauch LR, Szymanski MR, Das R, Tang SKY, Yin YW, Fire AZ. Transcription polymerase-catalyzed emergence of novel RNA replicons. Science (New York, N.Y.). PMID 32217750 DOI: 10.1126/Science.Aay0688 |
0.491 |
|
| 2020 |
Roskin KM, Jackson KJL, Lee JY, Hoh RA, Joshi SA, Hwang KK, Bonsignori M, Pedroza-Pacheco I, Liao HX, Moody MA, Fire AZ, Borrow P, Haynes BF, Boyd SD. Aberrant B cell repertoire selection associated with HIV neutralizing antibody breadth. Nature Immunology. PMID 31959979 DOI: 10.1038/S41590-019-0581-0 |
0.346 |
|
| 2019 |
Anand S, Caplin B, Gonzalez-Quiroz M, Schensul SL, Bhalla V, Parada X, Nanayakkara N, Fire A, Levin A, Friedman DJ. Epidemiology, molecular, and genetic methodologies to evaluate causes of CKDu around the world: report of the Working Group from the ISN International Consortium of Collaborators on CKDu. Kidney International. 96: 1254-1260. PMID 31759481 DOI: 10.1016/J.Kint.2019.09.019 |
0.329 |
|
| 2019 |
Ziraldo R, Shoura MJ, Fire AZ, Levene SD. Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications. Nucleic Acids Research. PMID 31226202 DOI: 10.1093/Nar/Gkz534 |
0.776 |
|
| 2019 |
Yoshimura J, Ichikawa K, Shoura MJ, Artiles KL, Gabdank I, Wahba L, Smith CL, Edgley ML, Rougvie AE, Fire AZ, Morishita S, Schwarz EM. Recompleting the genome. Genome Research. PMID 31123080 DOI: 10.1101/Gr.244830.118 |
0.753 |
|
| 2019 |
Pule MN, Glover ML, Fire AZ, Arribere JA. Ribosome clearance during RNA interference. Rna (New York, N.Y.). PMID 31110136 DOI: 10.1261/Rna.070813.119 |
0.48 |
|
| 2019 |
Fu BXH, Smith JD, Fuchs RT, Mabuchi M, Curcuru J, Robb GB, Fire AZ. Target-dependent nickase activities of the CRISPR-Cas nucleases Cpf1 and Cas9. Nature Microbiology. PMID 30833733 DOI: 10.1038/S41564-019-0382-0 |
0.491 |
|
| 2019 |
Artiles KL, Fire AZ, Frøkjær-Jensen C. Assessment and Maintenance of Unigametic Germline Inheritance for C. elegans. Developmental Cell. PMID 30799227 DOI: 10.1016/J.Devcel.2019.01.020 |
0.416 |
|
| 2019 |
Cenik ES, Meng X, Tang NH, Hall RN, Arribere JA, Cenik C, Jin Y, Fire A. Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans. Developmental Cell. PMID 30799226 DOI: 10.1016/J.Devcel.2019.01.019 |
0.456 |
|
| 2019 |
Anand S, Montez-Rath ME, Adasooriya D, Ratnatunga N, Kambham N, Wazil A, Wijetunge S, Badurdeen Z, Ratnayake C, Karunasena N, Schensul SL, Valhos P, Haider L, Bhalla V, Levin A, ... ... Fire AZ, et al. Prospective Biopsy-Based Study of Chronic Kidney Disease of Unknown Etiology in Sri Lanka. Clinical Journal of the American Society of Nephrology : Cjasn. PMID 30659059 DOI: 10.2215/Cjn.07430618 |
0.311 |
|
| 2019 |
Tian L, Liu Y, Fire AZ, Boyd SD, Olshen RA. Clonality: Point estimation The Annals of Applied Statistics. 13: 113-131. DOI: 10.1214/18-Aoas1197 |
0.292 |
|
| 2018 |
Mohr G, Silas S, Stamos JL, Makarova KS, Markham LM, Yao J, Lucas-Elío P, Sanchez-Amat A, Fire AZ, Koonin EV, Lambowitz AM. A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition. Molecular Cell. PMID 30344094 DOI: 10.1016/J.Molcel.2018.09.013 |
0.5 |
|
| 2018 |
Silas S, Lucas-Elio P, Jackson SA, Aroca-Crevillén A, Hansen LL, Fineran PC, Fire AZ, Sánchez-Amat A. Correction: Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems. Elife. 7. PMID 29616920 DOI: 10.7554/Elife.36853 |
0.325 |
|
| 2018 |
Silas S, Jain N, Stadler M, Fu BXH, Sánchez-Amat A, Fire AZ, Arribere J. A Small RNA Isolation and Sequencing Protocol and Its Application to Assay CRISPR RNA Biogenesis in Bacteria. Bio-Protocol. 8. PMID 29600253 DOI: 10.21769/BioProtoc.2727 |
0.423 |
|
| 2018 |
Arribere JA, Fire AZ. Nonsense mRNA suppression via nonstop decay. Elife. 7. PMID 29309033 DOI: 10.7554/Elife.33292 |
0.402 |
|
| 2018 |
Shoura M, Levene S, Fire A. Circulomics: Ultrasensitive Characterization of Extrachromosomal Circular DNA (eccDNA) Distributions and Functions in Eukaryotes Biophysical Journal. 114: 83a. DOI: 10.1016/J.Bpj.2017.11.499 |
0.762 |
|
| 2018 |
Levene SD, Shoura MJ, Fire AZ. Circulomics: The Structural Genomics of Endogenous and Exogenous Extrachromosomal Circular DNAs Biophysical Journal. 114: 83a. DOI: 10.1016/J.Bpj.2017.11.498 |
0.771 |
|
| 2017 |
Chung A, Hou Y, Ohgami RS, Von Gehr A, Fisk DG, Roskin KM, Li X, Gojenola L, Bangs CD, Arber DA, Fire AZ, Cherry AM, Zehnder JL, Gotlib J, Merker JD. A novel TRIP11-FLT3 fusion in a patient with a myeloid/lymphoid neoplasm with eosinophilia. Cancer Genetics. 216: 10-15. PMID 29025582 DOI: 10.1016/J.Cancergen.2017.05.001 |
0.352 |
|
| 2017 |
Silas S, Lucas-Elio P, Jackson SA, Aroca-Crevillén A, Hansen LL, Fineran PC, Fire AZ, Sánchez-Amat A. Type III CRISPR-Cas systems can provide redundancy to counteract viral escape from type I systems. Elife. 6. PMID 28826484 DOI: 10.7554/Elife.27601 |
0.418 |
|
| 2017 |
Shoura MJ, Gabdank I, Hansen L, Merker J, Gotlib J, Levene SD, Fire AZ. Intricate and Cell-type-specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens. G3 (Bethesda, Md.). PMID 28801508 DOI: 10.1534/G3.117.300141 |
0.788 |
|
| 2017 |
Silas S, Makarova KS, Shmakov S, Páez-Espino D, Mohr G, Liu Y, Davison M, Roux S, Krishnamurthy SR, Fu BXH, Hansen LL, Wang D, Sullivan MB, Millard A, Clokie MR, ... ... Fire AZ, et al. On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires. Mbio. 8. PMID 28698278 DOI: 10.1128/Mbio.00897-17 |
0.48 |
|
| 2017 |
Fu BXH, Wainberg M, Kundaje A, Fire AZ. High-Throughput Characterization of Cascade Type I-E CRISPR Guide Efficacy Reveals Unexpected PAM Diversity and Target Sequence Preferences. Genetics. PMID 28634160 DOI: 10.1534/Genetics.117.202580 |
0.482 |
|
| 2017 |
Lu J, Zhang F, Fire AZ, Kay MA. Sequence-Modified Antibiotic Resistance Genes Provide Sustained Plasmid-Mediated Transgene Expression in Mammals. Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 28365028 DOI: 10.1016/J.Ymthe.2017.03.003 |
0.468 |
|
| 2016 |
Frøkjær-Jensen C, Jain N, Hansen L, Davis MW, Li Y, Zhao D, Rebora K, Millet JR, Liu X, Kim SK, Dupuy D, Jorgensen EM, Fire AZ. An Abundant Class of Non-coding DNA Can Prevent Stochastic Gene Silencing in the C. elegans Germline. Cell. PMID 27374334 DOI: 10.1016/J.Cell.2016.05.072 |
0.52 |
|
| 2016 |
Arribere JA, Cenik ES, Jain N, Hess GT, Lee CH, Bassik MC, Fire AZ. Translation readthrough mitigation. Nature. PMID 27281202 DOI: 10.1038/Nature18308 |
0.443 |
|
| 2016 |
Fu BX, St Onge RP, Fire AZ, Smith JD. Distinct patterns of Cas9 mismatch tolerance in vitro and in vivo. Nucleic Acids Research. PMID 27198218 DOI: 10.1093/Nar/Gkw417 |
0.501 |
|
| 2016 |
Gabdank I, Ramakrishnan S, Villeneuve AM, Fire AZ. A streamlined tethered chromosome conformation capture protocol. Bmc Genomics. 17: 274. PMID 27036078 DOI: 10.1186/S12864-016-2596-3 |
0.387 |
|
| 2016 |
Bonsignori M, Zhou T, Sheng Z, Chen L, Gao F, Joyce MG, Ozorowski G, Chuang GY, Schramm CA, Wiehe K, Alam SM, Bradley T, Gladden MA, Hwang KK, Iyengar S, ... ... Fire AZ, et al. Maturation Pathway from Germline to Broad HIV-1 Neutralizer of a CD4-Mimic Antibody. Cell. PMID 26949186 DOI: 10.1016/J.Cell.2016.02.022 |
0.337 |
|
| 2016 |
Silas S, Mohr G, Sidote DJ, Markham LM, Sanchez-Amat A, Bhaya D, Lambowitz AM, Fire AZ. Direct CRISPR spacer acquisition from RNA by a natural reverse transcriptase-Cas1 fusion protein. Science (New York, N.Y.). 351: aad4234. PMID 26917774 DOI: 10.1126/Science.Aad4234 |
0.551 |
|
| 2015 |
Bell RT, Fu BX, Fire AZ. Cas9 Variants Expand the Target Repertoire in Caenorhabditis elegans. Genetics. PMID 26680661 DOI: 10.1534/Genetics.115.185041 |
0.47 |
|
| 2015 |
Wang C, Saborio S, Gresh L, Eswarappa M, Wu D, Fire A, Parameswaran P, Balmaseda A, Harris E. Chikungunya Virus Sequences Across the First Epidemic in Nicaragua, 2014-2015. The American Journal of Tropical Medicine and Hygiene. PMID 26643533 DOI: 10.4269/Ajtmh.15-0497 |
0.411 |
|
| 2015 |
Nakatani Y, Mello CC, Hashimoto SI, Shimada A, Nakamura R, Tsukahara T, Qu W, Yoshimura J, Suzuki Y, Sugano S, Takeda H, Fire A, Morishita S. Associations between nucleosome phasing, sequence asymmetry, and tissue-specific expression in a set of inbred Medaka species. Bmc Genomics. 16: 978. PMID 26584643 DOI: 10.1186/S12864-015-2198-5 |
0.376 |
|
| 2015 |
Levin M, King JJ, Glanville J, Jackson KJ, Looney TJ, Hoh RA, Mari A, Andersson M, Greiff L, Fire AZ, Boyd SD, Ohlin M. Persistence and evolution of allergen-specific IgE repertoires during subcutaneous specific immunotherapy. The Journal of Allergy and Clinical Immunology. PMID 26559321 DOI: 10.1016/J.Jaci.2015.09.027 |
0.344 |
|
| 2015 |
Zhang H, Artiles KL, Fire AZ. Functional relevance of "seed" and "non-seed" sequences in microRNA-mediated promotion of C. elegans developmental progression. Rna (New York, N.Y.). 21: 1980-92. PMID 26385508 DOI: 10.1261/Rna.053793.115 |
0.419 |
|
| 2014 |
Drake M, Furuta T, Suen KM, Gonzalez G, Liu B, Kalia A, Ladbury JE, Fire AZ, Skeath JB, Arur S. A requirement for ERK-dependent Dicer phosphorylation in coordinating oocyte-to-embryo transition in C. elegans. Developmental Cell. 31: 614-28. PMID 25490268 DOI: 10.1016/J.Devcel.2014.11.004 |
0.457 |
|
| 2014 |
Fu BX, Hansen LL, Artiles KL, Nonet ML, Fire AZ. Landscape of target:guide homology effects on Cas9-mediated cleavage. Nucleic Acids Research. 42: 13778-87. PMID 25399416 DOI: 10.1093/Nar/Gku1102 |
0.45 |
|
| 2014 |
Kepler TB, Liao HX, Alam SM, Bhaskarabhatla R, Zhang R, Yandava C, Stewart S, Anasti K, Kelsoe G, Parks R, Lloyd KE, Stolarchuk C, Pritchett J, Solomon E, Friberg E, ... ... Fire AZ, et al. Immunoglobulin gene insertions and deletions in the affinity maturation of HIV-1 broadly reactive neutralizing antibodies. Cell Host & Microbe. 16: 304-13. PMID 25211073 DOI: 10.1016/J.Chom.2014.08.006 |
0.352 |
|
| 2014 |
Arribere JA, Bell RT, Fu BX, Artiles KL, Hartman PS, Fire AZ. Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in Caenorhabditis elegans. Genetics. 198: 837-46. PMID 25161212 DOI: 10.1534/Genetics.114.169730 |
0.393 |
|
| 2014 |
Jackson KJ, Liu Y, Roskin KM, Glanville J, Hoh RA, Seo K, Marshall EL, Gurley TC, Moody MA, Haynes BF, Walter EB, Liao HX, Albrecht RA, García-Sastre A, Chaparro-Riggers J, ... ... Fire AZ, et al. Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements. Cell Host & Microbe. 16: 105-14. PMID 24981332 DOI: 10.1016/J.Chom.2014.05.013 |
0.359 |
|
| 2014 |
Wang C, Liu Y, Xu LT, Jackson KJ, Roskin KM, Pham TD, Laserson J, Marshall EL, Seo K, Lee JY, Furman D, Koller D, Dekker CL, Davis MM, Fire AZ, et al. Effects of aging, cytomegalovirus infection, and EBV infection on human B cell repertoires. Journal of Immunology (Baltimore, Md. : 1950). 192: 603-11. PMID 24337376 DOI: 10.4049/Jimmunol.1301384 |
0.367 |
|
| 2014 |
Gabdank I, Fire AZ. Gamete-type dependent crossover interference levels in a defined region of caenorhabditis elegans chromosome V G3: Genes, Genomes, Genetics. 4: 117-120. PMID 24240780 DOI: 10.1534/G3.113.008672 |
0.357 |
|
| 2014 |
Arribere JA, Bell RT, Fu BXH, Artiles KL, Hartman PS, Fire AZ. Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in caenorhabditis elegans Genetics. 198: 837-846. DOI: 10.1534/genetics.114.169730/-/DC1 |
0.244 |
|
| 2013 |
Gu S, Goszczynski B, McGhee JD, Fire AZ. Unusual DNA packaging characteristics in endoreduplicated Caenorhabditis elegans oocytes defined by in vivo accessibility to an endogenous nuclease activity. Epigenetics & Chromatin. 6: 37. PMID 24279402 DOI: 10.1186/1756-8935-6-37 |
0.462 |
|
| 2013 |
Stadler M, Fire A. Conserved Translatome Remodeling in Nematode Species Executing a Shared Developmental Transition Plos Genetics. 9. PMID 24098135 DOI: 10.1371/Journal.Pgen.1003739 |
0.429 |
|
| 2013 |
Merker JD, Roskin KM, Ng D, Pan C, Fisk DG, King JJ, Hoh R, Stadler M, Okumoto LM, Abidi P, Hewitt R, Jones CD, Gojenola L, Clark MJ, Zhang B, ... ... Fire AZ, et al. Comprehensive whole-genome sequencing of an early-stage primary myelofibrosis patient defines low mutational burden and non-recurrent candidate genes. Haematologica. 98: 1689-96. PMID 23872309 DOI: 10.3324/Haematol.2013.092379 |
0.468 |
|
| 2013 |
Parameswaran P, Liu Y, Roskin KM, Jackson KKL, Dixit VP, Lee JY, Artiles KL, Zompi S, Vargas MJ, Simen BB, Hanczaruk B, McGowan KR, Tariq MA, Pourmand N, Koller D, ... ... Fire AZ, et al. Convergent antibody signatures in human dengue Cell Host and Microbe. 13: 691-700. PMID 23768493 DOI: 10.1016/J.Chom.2013.05.008 |
0.385 |
|
| 2013 |
Saito TL, Hashimoto S, Gu SG, Morton JJ, Stadler M, Blumenthal T, Fire A, Morishita S. The transcription start site landscape of C. elegans. Genome Research. 23: 1348-61. PMID 23636945 DOI: 10.1101/Gr.151571.112 |
0.485 |
|
| 2013 |
Liao HX, Lynch R, Zhou T, Gao F, Munir Alam S, Boyd SD, Fire AZ, Roskin KM, Schramm CA, Zhang Z, Zhu J, Shapiro L, Mullikin JC, Gnanakaran S, Hraber P, et al. Co-evolution of a broadly neutralizing HIV-1 antibody and founder virus Nature. 496: 469-476. PMID 23552890 DOI: 10.1038/Nature12053 |
0.335 |
|
| 2013 |
Gracey Maniar LE, Maniar JM, Chen ZY, Lu J, Fire AZ, Kay MA. Minicircle DNA vectors achieve sustained expression reflected by active chromatin and transcriptional level. Molecular Therapy : the Journal of the American Society of Gene Therapy. 21: 131-8. PMID 23183534 DOI: 10.1038/Mt.2012.244 |
0.488 |
|
| 2012 |
Pak J, Maniar JM, Mello CC, Fire A. Protection from feed-forward amplification in an amplified RNAi mechanism. Cell. 151: 885-99. PMID 23141544 DOI: 10.1016/J.Cell.2012.10.022 |
0.492 |
|
| 2012 |
Stadler M, Artiles K, Pak J, Fire A. Contributions of mRNA abundance, ribosome loading, and post- or peri-translational effects to temporal repression of C. elegans heterochronic miRNA targets. Genome Research. 22: 2418-26. PMID 22855835 DOI: 10.1101/Gr.136515.111 |
0.382 |
|
| 2012 |
Buckley BA, Burkhart KB, Gu SG, Spracklin G, Kershner A, Fritz H, Kimble J, Fire A, Kennedy S. A nuclear Argonaute promotes multigenerational epigenetic inheritance and germline immortality. Nature. 489: 447-51. PMID 22810588 DOI: 10.1038/Nature11352 |
0.676 |
|
| 2012 |
Lu J, Zhang F, Xu S, Fire AZ, Kay MA. The extragenic spacer length between the 5' and 3' ends of the transgene expression cassette affects transgene silencing from plasmid-based vectors. Molecular Therapy : the Journal of the American Society of Gene Therapy. 20: 2111-9. PMID 22565847 DOI: 10.1038/Mt.2012.65 |
0.469 |
|
| 2012 |
Gu SG, Pak J, Guang S, Maniar JM, Kennedy S, Fire A. Amplification of siRNA in Caenorhabditis elegans generates a transgenerational sequence-targeted histone H3 lysine 9 methylation footprint. Nature Genetics. 44: 157-64. PMID 22231482 DOI: 10.1038/Ng.1039 |
0.481 |
|
| 2012 |
Kidd MJ, Chen Z, Wang Y, Jackson KJ, Zhang L, Boyd SD, Fire AZ, Tanaka MM, Gaëta BA, Collins AM. The inference of phased haplotypes for the immunoglobulin H chain V region gene loci by analysis of VDJ gene rearrangements. Journal of Immunology (Baltimore, Md. : 1950). 188: 1333-40. PMID 22205028 DOI: 10.4049/Jimmunol.1102097 |
0.416 |
|
| 2012 |
Moody M, Trama A, Bonsignori M, Tsao C, Drinker M, Gurley T, Amos J, Eudailey J, Armand L, Parks R, Lloyd K, Wang S, Seo K, Lee J, Jackson K, ... ... Fire A, et al. Antibody lineages with evidence of somatic hypermutation persisting for >4 years in a South African subject with broad neutralizing activity Retrovirology. 9. DOI: 10.1186/1742-4690-9-S2-P85 |
0.317 |
|
| 2012 |
Merker JD, Roskin K, Ng D, Pan C, Fisk DG, Jones CD, Gojenola L, Clark MJ, Zhang B, Cherry M, Snyder M, Boyd SD, Zehnder JL, Fire AZ, Gotlib J. Whole Genome Sequence Analysis of Primary Myelofibrosis. Blood. 120: 2863-2863. DOI: 10.1182/Blood.V120.21.2863.2863 |
0.423 |
|
| 2012 |
Ring J, Akdis C, Behrendt H, Lauener RP, Schäppi G, Akdis M, Ammann W, De Beaumont O, Bieber T, Bienenstock J, Blaser K, Bochner B, Bousquet J, Crameri R, Custovic A, ... ... Fire A, et al. Davos declaration: Allergy as a global problem (Allergy: European Journal of Allergy and Clinical Immunology (2012) 67, (141-143)) Allergy: European Journal of Allergy and Clinical Immunology. 67: 712. DOI: 10.1111/j.1398-9995.2012.02814.x |
0.174 |
|
| 2012 |
Deuse T, Seifert M, Phillips N, Fire A, Tyan D, Kay M, Tsao P, Hua X, Velden J, Eiermann T, Volk H, Reichenspurner H, Robbins R, Schrepfer S. Immunobiology of naïve and genetically-modified HLA I knockdown human embryonic stem cells The Thoracic and Cardiovascular Surgeon. 60. DOI: 10.1055/S-0031-1297531 |
0.348 |
|
| 2011 |
Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buño I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Davis RW, et al. High-throughput VDJ sequencing for quantification of minimal residual disease in chronic lymphocytic leukemia and immune reconstitution assessment. Proceedings of the National Academy of Sciences of the United States of America. 108: 21194-9. PMID 22160699 DOI: 10.1073/Pnas.1118357109 |
0.373 |
|
| 2011 |
Stadler M, Fire A. Wobble base-pairing slows in vivo translation elongation in metazoans Rna. 17: 2063-2073. PMID 22045228 DOI: 10.1261/Rna.02890211 |
0.428 |
|
| 2011 |
Liao HX, Chen X, Munshaw S, Zhang R, Marshall DJ, Vandergrift N, Whitesides JF, Lu X, Yu JS, Hwang KK, Gao F, Markowitz M, Heath SL, Bar KJ, Goepfert PA, ... ... Fire AZ, et al. Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated Journal of Experimental Medicine. 208: 2237-2249. PMID 21987658 DOI: 10.1084/Jem.20110363 |
0.319 |
|
| 2011 |
Deuse T, Seifert M, Phillips N, Fire A, Tyan D, Kay M, Tsao PS, Hua X, Velden J, Eiermann T, Volk HD, Reichenspurner H, Robbins RC, Schrepfer S. Human leukocyte antigen I knockdown human embryonic stem cells induce host ignorance and achieve prolonged xenogeneic survival. Circulation. 124: S3-9. PMID 21911816 DOI: 10.1161/Circulationaha.111.020727 |
0.381 |
|
| 2011 |
Deuse T, Seifert M, Phillips N, Fire A, Tyan D, Kay M, Tsao PS, Hua X, Velden J, Eiermann T, Volk HD, Reichenspurner H, Robbins RC, Schrepfer S. Immunobiology of naïve and genetically modified HLA-class-I-knockdown human embryonic stem cells. Journal of Cell Science. 124: 3029-37. PMID 21878509 DOI: 10.1242/Jcs.087718 |
0.369 |
|
| 2011 |
Zhang H, Maniar JM, Fire AZ. 'Inc-miRs': Functional intron-interrupted miRNA genes Genes and Development. 25: 1589-1594. PMID 21828269 DOI: 10.1101/Gad.2058711 |
0.377 |
|
| 2011 |
Ma Z, Swede H, Cassarino D, Fleming E, Fire A, Dadras SS. Up-regulated Dicer expression in patients with cutaneous melanoma. Plos One. 6: e20494. PMID 21698147 DOI: 10.1371/Journal.Pone.0020494 |
0.385 |
|
| 2011 |
Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A. Determinants of nucleosome organization in primary human cells. Nature. 474: 516-20. PMID 21602827 DOI: 10.1038/Nature10002 |
0.455 |
|
| 2011 |
Blanchard D, Parameswaran P, Lopez-Molina J, Gent J, Saynuk JF, Fire A. On the nature of in vivo requirements for rde-4 in RNAi and developmental pathways in C. elegans Rna Biology. 8: 458-467. PMID 21519199 DOI: 10.4161/Rna.8.3.14657 |
0.761 |
|
| 2011 |
Maniar JM, Fire AZ. EGO-1, a C. elegans RdRP, modulates gene expression via production of mRNA-templated short antisense RNAs Current Biology. 21: 449-459. PMID 21396820 DOI: 10.1016/J.Cub.2011.02.019 |
0.517 |
|
| 2011 |
Lamm AT, Stadler MR, Zhang H, Gent JI, Fire AZ. Multimodal RNA-seq using single-strand, double-strand, and CircLigase-based capture yields a refined and extended description of the C. elegans transcriptome Genome Research. 21: 265-275. PMID 21177965 DOI: 10.1101/Gr.108845.110 |
0.779 |
|
| 2011 |
Deuse T, Seifert M, Fire A, Philipps N, Hua X, Velden J, Kay M, Volk D, Reichenspurner H, Robbins R, Schrepfer S. Generation of genetically engineered low-antigenicity MHC I knock-down human embryonic stem cells to prevent immune rejection The Thoracic and Cardiovascular Surgeon. 59. DOI: 10.1055/S-0030-1269180 |
0.346 |
|
| 2011 |
Deuse T, Seifert M, Fire A, Phillips N, Hua X, Velden J, Kay M, Volk H, Reichenspurner H, Robbins R, Schrepfer S. 547 Hypoimmunogeneic HLA I Knockdown Human Embryonic Stem Cells Induce Host Ignorance and Achieve Prolonged Xenogeneic Survival The Journal of Heart and Lung Transplantation. 30: S184. DOI: 10.1016/J.Healun.2011.01.558 |
0.338 |
|
| 2011 |
Logan AC, Gao H, Wang C, Sahaf B, Jones CD, Marshall EL, Buño I, Armstrong R, Fire AZ, Weinberg KI, Mindrinos M, Zehnder JL, Boyd SD, Xiao W, Miklos DB. 4.11 High-Throughput VDJ Sequencing for Chronic Lymphocytic Leukemia: Minimal Residual Disease Quantification and Immunoglobulin Repertoire Assessment Following Hematopoietic Cell Transplantation Clinical Lymphoma Myeloma and Leukemia. 11: S224. DOI: 10.1016/J.Clml.2011.09.131 |
0.337 |
|
| 2010 |
Wu D, Lamm AT, Fire AZ. Competition between ADAR and RNAi pathways for an extensive class of RNA targets Nature Structural and Molecular Biology. 18: 1094-1101. PMID 21909095 DOI: 10.1038/Nsmb.2129 |
0.491 |
|
| 2010 |
Sha K, Gu SG, Pantalena-Filho LC, Goh A, Fleenor J, Blanchard D, Krishna C, Fire A. Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans. Bmc Genomics. 11: 465. PMID 20691096 DOI: 10.1186/1471-2164-11-465 |
0.441 |
|
| 2010 |
Gracey LE, Chen ZY, Maniar JM, Valouev A, Sidow A, Kay MA, Fire AZ. An in vitro-identified high-affinity nucleosome-positioning signal is capable of transiently positioning a nucleosome in vivo. Epigenetics & Chromatin. 3: 13. PMID 20594331 DOI: 10.1186/1756-8935-3-13 |
0.456 |
|
| 2010 |
Boyd SD, Gaëta BA, Jackson KJ, Fire AZ, Marshall EL, Merker JD, Maniar JM, Zhang LN, Sahaf B, Jones CD, Simen BB, Hanczaruk B, Nguyen KD, Nadeau KC, Egholm M, et al. Individual variation in the germline Ig gene repertoire inferred from variable region gene rearrangements. Journal of Immunology (Baltimore, Md. : 1950). 184: 6986-92. PMID 20495067 DOI: 10.4049/Jimmunol.1000445 |
0.446 |
|
| 2010 |
Zhang H, Fire AZ. Cell autonomous specification of temporal identity by Caenorhabditis elegans microRNA lin-4 Developmental Biology. 344: 603-610. PMID 20493184 DOI: 10.1016/J.Ydbio.2010.05.018 |
0.421 |
|
| 2010 |
Witten D, Tibshirani R, Gu SG, Fire A, Lui WO. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls Bmc Biology. 8. PMID 20459774 DOI: 10.1186/1741-7007-8-58 |
0.5 |
|
| 2010 |
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA. Human tRNA-derived small RNAs in the global regulation of RNA silencing. Rna (New York, N.Y.). 16: 673-95. PMID 20181738 DOI: 10.1261/Rna.2000810 |
0.509 |
|
| 2010 |
Parameswaran P, Sklan E, Wilkins C, Burgon T, Samuel MA, Lu R, Ansel KM, Heissmeyer V, Einav S, Jackson W, Doukas T, Paranjape S, Polacek C, dos Santos FB, Jalili R, ... ... Fire AZ, et al. Six RNA viruses and forty-one hosts: viral small RNAs and modulation of small RNA repertoires in vertebrate and invertebrate systems. Plos Pathogens. 6: e1000764. PMID 20169186 DOI: 10.1371/Journal.Ppat.1000764 |
0.476 |
|
| 2010 |
Gent JI, Lamm AT, Pavelec DM, Maniar JM, Parameswaran P, Tao L, Kennedy S, Fire AZ. Distinct Phases of siRNA Synthesis in an Endogenous RNAi Pathway in C. elegans Soma Molecular Cell. 37: 679-689. PMID 20116306 DOI: 10.1016/J.Molcel.2010.01.012 |
0.765 |
|
| 2010 |
Gu SG, Fire A. Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning Chromosoma. 119: 73-87. PMID 19705140 DOI: 10.1007/S00412-009-0235-3 |
0.411 |
|
| 2010 |
Logan AC, Wang C, Sahaf B, Jones CD, Marshall EL, Buno I, Fire AZ, Mindrinos M, Zehnder JL, Boyd SD, Miklos DB. High-Throughput VDJ Sequencing Is Superior to Quantitative PCR and Flow Cytometry for the Quantification of Minimal Residual Disease In Chronic Lymphocytic Leukemia After Hematopoietic Cell Transplantation. Blood. 116: 1290-1290. DOI: 10.1182/Blood.V116.21.1290.1290 |
0.393 |
|
| 2010 |
Deuse T, Seifert M, Fire A, Phillips N, Kay M, Reichenspurner H, Robbins R, Schrepfer S. 347: Generation of Genetically Engineered Low-Antigenicity MHC I Knock-Down Human Embryonic Stem Cells To Prevent Immune Rejection The Journal of Heart and Lung Transplantation. 29: S116-S117. DOI: 10.1016/J.Healun.2009.11.360 |
0.346 |
|
| 2009 |
Boyd SD, Marshall EL, Merker JD, Maniar JM, Zhang LN, Sahaf B, Jones CD, Simen BB, Hanczaruk B, Nguyen KD, Nadeau KC, Egholm M, Miklos DB, Zehnder JL, Fire AZ. Measurement and clinical monitoring of human lymphocyte clonality by massively parallel VDJ pyrosequencing. Science Translational Medicine. 1: 12ra23. PMID 20161664 DOI: 10.1126/Scitranslmed.3000540 |
0.437 |
|
| 2009 |
Gent JI, Schvarzstein M, Villeneuve AM, Gu SG, Jantsch V, Fire AZ, Baudrimont A. A Caenorhabditis elegans RNA-directed RNA polymerase in sperm development and endogenous RNA interference Genetics. 183: 1297-1314. PMID 19805814 DOI: 10.1534/Genetics.109.109686 |
0.78 |
|
| 2009 |
Ma Z, Lui WO, Fire A, Dadras SS. Profiling and discovery of novel miRNAs from formalin-fixed, paraffin-embedded melanoma and nodal specimens Journal of Molecular Diagnostics. 11: 420-429. PMID 19710399 DOI: 10.2353/Jmoldx.2009.090041 |
0.419 |
|
| 2009 |
Lei H, Liu J, Fukushige T, Fire A, Krause MW. Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network Development. 136: 1241-1249. PMID 19261701 DOI: 10.1242/Dev.030668 |
0.405 |
|
| 2009 |
Sasaki S, Mello CC, Shimada A, Nakatani Y, Hashimoto S, Ogawa M, Matsushima K, Gu SG, Kasahara M, Ahsan B, Sasaki A, Saito T, Suzuki Y, Sugano S, Kohara Y, ... ... Fire A, et al. Chromatin-associated periodicity in genetic variation downstream of transcriptional start sites. Science (New York, N.Y.). 323: 401-4. PMID 19074313 DOI: 10.1126/Science.1163183 |
0.449 |
|
| 2008 |
Tan FJ, Husain M, Manlandro CM, Koppenol M, Fire AZ, Hill RB. CED-9 and mitochondrial homeostasis in C. elegans muscle Journal of Cell Science. 121: 3373-3382. PMID 18827010 DOI: 10.1242/Jcs.032904 |
0.351 |
|
| 2008 |
Alcazar RM, Lin R, Fire AZ. Transmission dynamics of heritable silencing induced by double-stranded RNA in Caenorhabditis elegans Genetics. 180: 1275-1288. PMID 18757930 DOI: 10.1534/Genetics.108.089433 |
0.454 |
|
| 2008 |
Haussecker D, Cao D, Huang Y, Parameswaran P, Fire AZ, Kay MA. Capped small RNAs and MOV10 in human hepatitis delta virus replication. Nature Structural & Molecular Biology. 15: 714-21. PMID 18552826 DOI: 10.1038/Nsmb.1440 |
0.495 |
|
| 2008 |
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM. A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning. Genome Research. 18: 1051-63. PMID 18477713 DOI: 10.1101/Gr.076463.108 |
0.439 |
|
| 2008 |
Subramanian S, Lui WO, Lee CH, Espinosa I, Nielsen TO, Heinrich MC, Corless CL, Fire AZ, Van De Rijn M. MicroRNA expression signature of human sarcomas Oncogene. 27: 2015-2026. PMID 17922033 DOI: 10.1038/Sj.Onc.1210836 |
0.377 |
|
| 2008 |
Boyd SD, Merker JD, Zehnder JL, Fire AZ. High-Throughput Sequencing for Diagnosis, Prognosis and Monitoring of Lymphoid Malignancies Blood. 112: 3779-3779. DOI: 10.1182/Blood.V112.11.3779.3779 |
0.429 |
|
| 2007 |
Fire AZ. Gene silencing by double-stranded RNA Cell Death and Differentiation. 14: 1998-2012. PMID 18007671 DOI: 10.1038/Sj.Cdd.4402253 |
0.471 |
|
| 2007 |
Parameswaran P, Jalili R, Tao L, Shokralla S, Gharizadeh B, Ronaghi M, Fire AZ. A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing Nucleic Acids Research. 35. PMID 17932070 DOI: 10.1093/Nar/Gkm760 |
0.422 |
|
| 2007 |
Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, Pourmand N. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications. Plos One. 2: e915. PMID 17878950 DOI: 10.1371/Journal.Pone.0000915 |
0.404 |
|
| 2007 |
Fire AZ. Gene silencing by double-stranded RNA (Nobel Lecture) Angewandte Chemie - International Edition. 46: 6966-6984. PMID 17722137 DOI: 10.1002/Anie.200701979 |
0.471 |
|
| 2007 |
Tan FJ, Fire AZ, Hill RB. Regulation of apoptosis by C. elegans CED-9 in the absence of the C-terminal transmembrane domain Cell Death and Differentiation. 14: 1925-1935. PMID 17703231 DOI: 10.1038/Sj.Cdd.4402215 |
0.367 |
|
| 2007 |
Gu SG, Pak J, Barberan-Soler S, Ali M, Fire A, Zahler AM. Distinct ribonucleoprotein reservoirs for microRNA and siRNA populations in C. elegans Rna. 13: 1492-1504. PMID 17652138 DOI: 10.1261/Rna.581907 |
0.445 |
|
| 2007 |
Lui WO, Pourmand N, Patterson BK, Fire A. Patterns of known and novel small RNAs in human cervical cancer Cancer Research. 67: 6031-6043. PMID 17616659 DOI: 10.1158/0008-5472.Can-06-0561 |
0.369 |
|
| 2007 |
Pak J, Fire A. Distinct populations of primary and secondary effectors during RNAi in C. elegans Science. 315: 241-244. PMID 17124291 DOI: 10.1126/Science.1132839 |
0.498 |
|
| 2007 |
Akhras MS, Unemo M, Thiyagarajan S, Nyrén P, Davis RW, Fire AZ, Pourmand N. Connector Inversion Probe technology: A powerful one-primer multiplex DAN amplification system for numerous scientific application Plos One. 2. DOI: 10.1371/journal.pone.0000915 |
0.218 |
|
| 2007 |
Fire AZ. Gen‐Stummschaltung durch doppelsträngige RNA (Nobel‐Vortrag) Angewandte Chemie. 119: 7094-7113. DOI: 10.1002/Ange.200701979 |
0.38 |
|
| 2006 |
Johnson SM, Tan FJ, McCullough HL, Riordan DP, Fire AZ. Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin. Genome Research. 16: 1505-16. PMID 17038564 DOI: 10.1101/Gr.5560806 |
0.456 |
|
| 2006 |
Blanchard D, Hutter H, Fleenor J, Fire A. A differential cytolocalization assay for analysis of macromolecular assemblies in the eukaryotic cytoplasm Molecular and Cellular Proteomics. 5: 2175-2184. PMID 16914455 DOI: 10.1074/Mcp.T600025-Mcp200 |
0.392 |
|
| 2006 |
Foehr ML, Lindy AS, Fairbank RC, Amin NM, Xu M, Yanowitz J, Fire AZ, Liu J. An antagonistic role for the C. elegans Schnurri homolog SMA-9 in modulating TGFbeta signaling during mesodermal patterning. Development (Cambridge, England). 133: 2887-96. PMID 16790477 DOI: 10.1242/Dev.02476 |
0.371 |
|
| 2006 |
Moreno-Herrero F, Seidel R, Johnson SM, Fire A, Dekker NH. Structural analysis of hyperperiodic DNA from Caenorhabditis elegans. Nucleic Acids Research. 34: 3057-66. PMID 16738142 DOI: 10.1093/Nar/Gkl397 |
0.469 |
|
| 2006 |
Fire A, Alcazar R, Tan F. Unusual DNA structures associated with germline genetic activity in Caenorhabditis elegans Genetics. 173: 1259-1273. PMID 16648589 DOI: 10.1534/Genetics.106.057364 |
0.497 |
|
| 2005 |
Fire A. Nucleic acid structure and intracellular immunity: Some recent ideas from the world of RNAi Quarterly Reviews of Biophysics. 38: 303-309. PMID 16515739 DOI: 10.1017/S0033583505004117 |
0.501 |
|
| 2005 |
Sha K, Fire A. Imprinting capacity of gamete lineages in Caenorhabditis elegans Genetics. 170: 1633-1652. PMID 15944356 DOI: 10.1534/Genetics.104.040303 |
0.407 |
|
| 2005 |
Yanowitz J, Fire A. Cyclin D involvement demarcates a late transition in C. elegans embryogenesis Developmental Biology. 279: 244-251. PMID 15708572 DOI: 10.1016/J.Ydbio.2004.12.022 |
0.426 |
|
| 2005 |
Fire A. Foreword Rna Interference Technology: From Basic Science to Drug Development. xi-xii. DOI: 10.1017/CBO9780511546402.001 |
0.266 |
|
| 2004 |
Yanowitz JL, Shakir MA, Hedgecock E, Hutter H, Fire AZ, Lundquist EA. UNC-39, the C. elegans homolog of the human myotonic dystrophy-associated homeodomain protein Six5, regulates cell motility and differentiation Developmental Biology. 272: 389-402. PMID 15282156 DOI: 10.1016/J.Ydbio.2004.05.010 |
0.425 |
|
| 2004 |
Fire A. RNAi, genome ultrastructure, and other unexpected tales from the analysis of genetic silencing Proceedings of the Annual International Conference On Computational Molecular Biology, Recomb. 8: 242. |
0.311 |
|
| 2003 |
Timmons L, Tabara H, Mello CC, Fire AZ. Inducible systemic RNA silencing in Caenorhabditis elegans. Molecular Biology of the Cell. 14: 2972-83. PMID 12857879 DOI: 10.1091/Mbc.E03-01-0858 |
0.501 |
|
| 2002 |
Simmer F, Tijsterman M, Parrish S, Koushika SP, Nonet ML, Fire A, Ahringer J, Plasterk RH. Loss of the putative RNA-directed RNA polymerase RRF-3 makes C. elegans hypersensitive to RNAi. Current Biology : Cb. 12: 1317-9. PMID 12176360 DOI: 10.1016/S0960-9822(02)01041-2 |
0.503 |
|
| 2002 |
Caplen NJ, Taylor JP, Statham VS, Tanaka F, Fire A, Morgan RA. Rescue of polyglutamine-mediated cytotoxicity by double-stranded RNA-mediated RNA interference. Human Molecular Genetics. 11: 175-84. PMID 11809726 DOI: 10.1093/Hmg/11.2.175 |
0.538 |
|
| 2002 |
Kostas SA, Fire A. The T-box factor MLS-1 acts as a molecular switch during specification of nonstriated muscle in C. elegans Genes and Development. 16: 257-269. PMID 11799068 DOI: 10.1101/Gad.923102 |
0.378 |
|
| 2001 |
Sijen T, Fleenor J, Simmer F, Thijssen KL, Parrish S, Timmons L, Plasterk RH, Fire A. On the role of RNA amplification in dsRNA-triggered gene silencing. Cell. 107: 465-76. PMID 11719187 DOI: 10.1016/S0092-8674(01)00576-1 |
0.496 |
|
| 2001 |
Parrish S, Fire A. Distinct roles for RDE-1 and RDE-4 during RNA interference in Caenorhabditis elegans Rna. 7: 1397-1402. PMID 11680844 |
0.413 |
|
| 2001 |
Caplen NJ, Parrish S, Imani F, Fire A, Morgan RA. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems Proceedings of the National Academy of Sciences of the United States of America. 98: 9742-9747. PMID 11481446 DOI: 10.1073/Pnas.171251798 |
0.528 |
|
| 2001 |
Grishok A, Pasquinelli AE, Conte D, Li N, Parrish S, Ha I, Baillie DL, Fire A, Ruvkun G, Mello CC. Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell. 106: 23-34. PMID 11461699 DOI: 10.1016/S0092-8674(01)00431-7 |
0.686 |
|
| 2001 |
Timmons L, Court DL, Fire A. Ingestion of bacterially expressed dsRNAs can produce specific and potent genetic interference in Caenorhabditis elegans Gene. 263: 103-112. PMID 11223248 DOI: 10.1016/S0378-1119(00)00579-5 |
0.478 |
|
| 2000 |
Parrish S, Fleenor J, Xu S, Mello C, Fire A. Functional anatomy of a dsRNA trigger: Differential requirement for the two trigger strands in RNA interference Molecular Cell. 6: 1077-1087. PMID 11106747 DOI: 10.1016/S1097-2765(00)00106-4 |
0.494 |
|
| 2000 |
Hsieh J, Fire A. Recognition and silencing of repeated DNA Annual Review of Genetics. 34: 187-204. PMID 11092826 DOI: 10.1146/Annurev.Genet.34.1.187 |
0.488 |
|
| 2000 |
Liu J, Ben-Shahar TR, Riemer D, Treinin M, Spann P, Weber K, Fire A, Gruenbaum Y. Essential roles for Caenorhabditis elegans lamin gene in nuclear organization, cell cycle progression, and spatial organization of nuclear pore complexes Molecular Biology of the Cell. 11: 3937-3947. PMID 11071918 DOI: 10.1091/Mbc.11.11.3937 |
0.434 |
|
| 2000 |
Liu J, Fire A. Overlapping roles of two Hox genes and the exd ortholog ceh-20 in diversification of the C. elegans postembryonic mesoderm Development. 127: 5179-5190. PMID 11060243 |
0.316 |
|
| 2000 |
Caplen NJ, Fleenor J, Fire A, Morgan RA. dsRNA-mediated gene silencing in cultured Drosophila cells: A tissue culture model for the analysis of RNA interference Gene. 252: 95-105. PMID 10903441 DOI: 10.1016/S0378-1119(00)00224-9 |
0.504 |
|
| 2000 |
Dichoso D, Brodigan T, Chwoe KY, Lee JS, Llacer R, Park M, Corsi AK, Kostas SA, Fire A, Ahnn J, Krause M. The MADS-box factor CeMEF2 is not essential for Caenorhebditis elegans myogenesis and development Developmental Biology. 223: 431-440. PMID 10882527 DOI: 10.1006/Dbio.2000.9758 |
0.424 |
|
| 2000 |
Kostich M, Fire A, Fambrough DM. Identification and molecular-genetic characterization of a LAMP/CD68-like protein from Caenorhabditis elegans. Journal of Cell Science. 113: 2595-606. PMID 10862717 |
0.304 |
|
| 2000 |
Corsi AK, Kostas SA, Fire A, Krause M. Caenorhabditis elegans Twist plays an essential role in non-striated muscle development Development. 127: 2041-2051. PMID 10769229 |
0.33 |
|
| 1999 |
Hsieh J, Liu J, Kostas SA, Chang C, Sternberg PW, Fire A. The RING finger/B-box factor TAM-1 and a retinoblastoma-like protein LIN-35 modulate context-dependent gene silencing in Caenorhabditis elegans. Genes & Development. 13: 2958-70. PMID 10580003 DOI: 10.1101/Gad.13.22.2958 |
0.438 |
|
| 1999 |
Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A, Mello CC. The rde-1 gene, RNA interference, and transposon silencing in C. elegans. Cell. 99: 123-32. PMID 10535731 DOI: 10.1016/S0092-8674(00)81644-X |
0.498 |
|
| 1999 |
Fire A. RNA-triggered gene silencing Trends in Genetics. 15: 358-363. PMID 10461204 DOI: 10.1016/S0168-9525(99)01818-1 |
0.525 |
|
| 1999 |
Miller DM, Desai NS, Hardin DC, Piston DW, Patterson GH, Fleenor J, Xu S, Fire A. Two-color GFP expression system for C. elegans. Biotechniques. 26: 914-8, 920-1. PMID 10337485 DOI: 10.2144/99265Rr01 |
0.47 |
|
| 1999 |
Zhang JM, Chen L, Krause M, Fire A, Paterson BM. Evolutionary conservation of MyoD function and differential utilization of E proteins Developmental Biology. 208: 465-472. PMID 10191059 DOI: 10.1006/Dbio.1999.9218 |
0.416 |
|
| 1998 |
Montgomery MK, Xu S, Fire A. RNA as a target of double-stranded RNA-mediated genetic interference in Caenorhabditis elegans Proceedings of the National Academy of Sciences of the United States of America. 95: 15502-15507. PMID 9860998 DOI: 10.1073/Pnas.95.26.15502 |
0.52 |
|
| 1998 |
Timmons L, Fire A. Specific interference by ingested dsRNA [10] Nature. 395: 854. PMID 9804418 DOI: 10.1038/27579 |
0.482 |
|
| 1998 |
Harfe BD, Vaz Gomes A, Kenyon C, Liu J, Krause M, Fire A. Analysis of a Caenorhabditis elegans Twist homolog identifies conserved and divergent aspects of mesodermal patterning. Genes & Development. 12: 2623-35. PMID 9716413 DOI: 10.1101/Gad.12.16.2623 |
0.575 |
|
| 1998 |
Montgomery MK, Fire A. Double-stranded RNA as a mediator in sequence-specific genetic silencing and co-suppression Trends in Genetics. 14: 255-258. PMID 9676523 DOI: 10.1016/S0168-9525(98)01510-8 |
0.505 |
|
| 1998 |
Kelly WG, Fire A. Chromatin silencing and the maintenance of a functional germline in Caenorhabditis elegans Development. 125: 2451-2456. PMID 9609828 |
0.359 |
|
| 1998 |
Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature. 391: 806-11. PMID 9486653 DOI: 10.1038/35888 |
0.505 |
|
| 1997 |
Harbinder S, Tavernarakis N, Herndon LA, Kinnell M, Xu SQ, Fire A, Driscoll M. Genetically targeted cell disruption in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 94: 13128-33. PMID 9371811 DOI: 10.1073/Pnas.94.24.13128 |
0.402 |
|
| 1997 |
Fleming JT, Squire MD, Barnes TM, Tornoe C, Matsuda K, Ahnn J, Fire A, Sulston JE, Barnard EA, Sattelle DB, Lewis JA. Caenorhabditis elegans levamisole resistance genes lev-1, unc-29, and unc-38 encode functional nicotinic acetylcholine receptor subunits. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 17: 5843-57. PMID 9221782 DOI: 10.1523/Jneurosci.17-15-05843.1997 |
0.367 |
|
| 1997 |
Moerman DG, Fire A. 16 Muscle: Structure, Function, and Development Cold Spring Harbor Monograph Archive. 33: 417-470. DOI: 10.1101/087969532.33.417 |
0.336 |
|
| 1996 |
Seydoux G, Mello CC, Pettitt J, Wood WB, Priess JR, Fire A. Repression of gene expression in the embryonic germ lineage of C. elegans. Nature. 382: 713-6. PMID 8751441 DOI: 10.1038/382713A0 |
0.69 |
|
| 1995 |
Seydoux G, Fire A. Whole-mount in situ hybridization for the detection of RNA in Caenorhabditis elegans embryos. Methods in Cell Biology. 48: 323-37. PMID 8531733 DOI: 10.1016/S0091-679X(08)61394-1 |
0.694 |
|
| 1995 |
Fire A, Xu S. Rolling replication of short DNA circles. Proceedings of the National Academy of Sciences of the United States of America. 92: 4641-4645. PMID 7753856 DOI: 10.1073/Pnas.92.10.4641 |
0.458 |
|
| 1995 |
Mello C, Fire A. Chapter 19 DNA Transformation Methods in Cell Biology. 48: 451-482. DOI: 10.1016/S0091-679X(08)61399-0 |
0.442 |
|
| 1994 |
Krause M, Harrison SW, Xu SQ, Chen L, Fire A. Elements regulating cell- and stage-specific expression of the C. elegans MyoD family homolog hlh-1. Developmental Biology. 166: 133-48. PMID 7958441 DOI: 10.1006/Dbio.1994.1302 |
0.455 |
|
| 1994 |
Fire A. A four-dimensional digital image archiving system for cell lineage tracing and retrospective embryology Bioinformatics. 10: 443-447. PMID 7804877 DOI: 10.1093/Bioinformatics/10.4.443 |
0.335 |
|
| 1993 |
Perry MD, Li W, Trent C, Robertson B, Fire A, Hageman JM, Wood WB. Molecular characterization of the her-1 gene suggests a direct role in cell signaling during Caenorhabditis elegans sex determination Genes and Development. 7: 216-228. PMID 8436294 DOI: 10.1101/Gad.7.2.216 |
0.434 |
|
| 1993 |
Crawford N, Fire A, Samuels M, Sharp PA, Baltimore D. Inhibition of transcription factor activity by poliovirus. Cell. 27: 555-61. PMID 6086108 DOI: 10.1016/0092-8674(81)90397-4 |
0.547 |
|
| 1992 |
Krause M, Fire A, White-Harrison S, Weintraub H, Tapscott S. Functional conservation of nematode and vertebrate myogenic regulatory factors. Journal of Cell Science. Supplement. 16: 111-5. PMID 1338434 DOI: 10.1242/Jcs.1992.Supplement_16.13 |
0.571 |
|
| 1992 |
Chen L, Krause M, Draper B, Weintraub H, Fire A. Body-wall muscle formation in Caenorhabditis elegans embryos that lack the MyoD homolog hlh-1. Science (New York, N.Y.). 256: 240-3. PMID 1314423 DOI: 10.1126/Science.1314423 |
0.567 |
|
| 1992 |
Fire A. Histochemical techniques for locating Escherichia coli β-galactosidase activity in transgenic organisms☆ Genetic Analysis: Biomolecular Engineering. 9: 151-158. PMID 1296710 DOI: 10.1016/1050-3862(92)90042-4 |
0.358 |
|
| 1990 |
Fire A, Kondo K, Waterston R. Vectors for low copy transformation of C. elegans Nucleic Acids Research. 18: 4269. PMID 2377476 DOI: 10.1093/Nar/18.14.4269 |
0.558 |
|
| 1990 |
Krause M, Fire A, Harrison SW, Priess J, Weintraub H. CeMyoD accumulation defines the body wall muscle cell fate during C. elegans embryogenesis. Cell. 63: 907-19. PMID 2175254 DOI: 10.1016/0092-8674(90)90494-Y |
0.577 |
|
| 1990 |
Fire A, Harrison SW, Dixon D. A modular set of lacZ fusion vectors for studying gene expression in Caenorhabditis elegans. Gene. 93: 189-198. PMID 2121610 DOI: 10.1016/0378-1119(90)90224-F |
0.436 |
|
| 1989 |
Fire A, Waterston R. Proper expression of myosin genes in transgenic nematodes. The Embo Journal. 8: 3419-3428. DOI: 10.1002/J.1460-2075.1989.Tb08506.X |
0.627 |
|
| 1986 |
Fire A. Integrative transformation of Caenorhabditis elegans. The Embo Journal. 5: 2673-2680. DOI: 10.1002/J.1460-2075.1986.Tb04550.X |
0.465 |
|
| 1983 |
Laski FA, Fire AZ, RajBhandary UL, Sharp PA. Characterization of tRNA precursor splicing in mammalian extracts. The Journal of Biological Chemistry. 258: 11974-80. PMID 6413507 |
0.508 |
|
| 1983 |
Manley JL, Fire A, Samuels M, Sharp PA. In vitro transcription: whole-cell extract. Methods in Enzymology. 101: 568-82. PMID 6193397 DOI: 10.1016/0076-6879(83)01038-1 |
0.592 |
|
| 1981 |
Fire A, Baker CC, Manley JL, Ziff EB, Sharp PA. In vitro transcription of adenovirus. Journal of Virology. 40: 703-19. PMID 7321101 DOI: 10.1128/Jvi.40.3.703-719.1981 |
0.53 |
|
| 1981 |
Sharp PA, Manley J, Fire A, Gefter M. Regulation of adenovirus mRNA synthesis. Annals of the New York Academy of Sciences. 354: 1-15. PMID 7013617 DOI: 10.1111/J.1749-6632.1980.Tb27954.X |
0.584 |
|
| 1980 |
Manley JL, Fire A, Cano A, Sharp PA, Gefter ML. DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract. Proceedings of the National Academy of Sciences of the United States of America. 77: 3855-9. PMID 6933441 DOI: 10.1073/Pnas.77.7.3855 |
0.618 |
|
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