| Year |
Citation |
Score |
| 2023 |
Vianello E, Persson J, Andersson B, van Veen S, Dias TL, Santoro F, Östensson M, Obudulu O, Agbajogu C, Torkzadeh S, Nakaya HI, Medaglini D, Siegrist CA, Ottenhoff THM, Harandi AM. Global blood miRNA profiling unravels early signatures of immunogenicity of Ebola vaccine rVSVΔG-ZEBOV-GP. Iscience. 26: 108574. PMID 38162033 DOI: 10.1016/j.isci.2023.108574 |
0.304 |
|
| 2023 |
Gonzalez Dias Carvalho PC, Dominguez Crespo Hirata T, Mano Alves LY, Moscardini IF, do Nascimento APB, Costa-Martins AG, Sorgi S, Harandi AM, Ferreira DM, Vianello E, Haks MC, Ottenhoff THM, Santoro F, Martinez-Murillo P, Huttner A, ... ... Nakaya HI, et al. Baseline gene signatures of reactogenicity to Ebola vaccination: a machine learning approach across multiple cohorts. Frontiers in Immunology. 14: 1259197. PMID 38022684 DOI: 10.3389/fimmu.2023.1259197 |
0.448 |
|
| 2023 |
Oliveira JR, Ruiz CMR, Machado RRG, Magawa JY, Daher IP, Urbanski AH, Schmitz GJH, Arcuri HA, Ferreira MA, Sasahara GL, de Medeiros GX, Júnior RCVS, Durigon EL, Boscardin SB, Rosa DS, ... ... Nakaya HI, et al. Immunodominant antibody responses directed to SARS-CoV-2 hotspot mutation sites and risk of immune escape. Frontiers in Immunology. 13: 1010105. PMID 36685521 DOI: 10.3389/fimmu.2022.1010105 |
0.471 |
|
| 2022 |
Lima K, Fontoura JC, de Souza PO, Fazolo T, Hilario G, Zorzetto R, Rodrigues Junior LC, Coimbra LD, Borin A, Bispo-Dos-Santos K, Granja F, Marques RE, Zavaglia GO, Fernandes IR, Varela FH, ... ... Nakaya HI, et al. SARS-CoV-2 infected children form early immune memory responses dominated by nucleocapsid-specific CD8+ T cells and antibodies. Frontiers in Immunology. 13: 1033364. PMID 36405692 DOI: 10.3389/fimmu.2022.1033364 |
0.32 |
|
| 2022 |
Pannaraj PS, da Costa-Martins AG, Cerini C, Li F, Wong SS, Singh Y, Urbanski AH, Gonzalez-Dias P, Yang J, Webby RJ, Nakaya HI, Aldrovandi GM. Molecular alterations in human milk in simulated maternal nasal mucosal infection with live attenuated influenza vaccination. Mucosal Immunology. PMID 35739193 DOI: 10.1038/s41385-022-00537-4 |
0.499 |
|
| 2022 |
Costa-Martins AG, Mane K, Lindsey BB, Ogava RLT, Castro IC, Jagne YJ, Sallah HJ, Armitage EP, Jarju S, Ahadzie B, Ellis-Watson R, Tregoning JS, Bingle CD, Bogaert D, Clarke E, ... ... Nakaya HI, et al. Erratum: Prior upregulation of interferon pathways in the nasopharynx impacts viral shedding following live attenuated influenza vaccine challenge in children. Cell Reports. Medicine. 3: 100516. PMID 35243419 DOI: 10.1016/j.xcrm.2022.100516 |
0.371 |
|
| 2021 |
Vianello E, Gonzalez-Dias P, van Veen S, Engele CG, Quinten E, Monath TP, Medaglini D, Santoro F, Huttner A, Dubey S, Eichberg M, Ndungu FM, Kremsner PG, Essone PN, Agnandji ST, ... ... Nakaya HI, et al. Transcriptomic signatures induced by the Ebola virus vaccine rVSVΔG-ZEBOV-GP in adult cohorts in Europe, Africa, and North America: a molecular biomarker study. The Lancet. Microbe. 3: e113-e123. PMID 35544042 DOI: 10.1016/S2666-5247(21)00235-4 |
0.493 |
|
| 2021 |
Costa-Martins AG, Mane K, Lindsey BB, Ogava RLT, Castro Í, Jagne YJ, Sallah HJ, Armitage EP, Jarju S, Ahadzie B, Ellis-Watson R, Tregoning JS, Bingle CD, Bogaert D, Clarke E, ... ... Nakaya HI, et al. Prior upregulation of interferon pathways in the nasopharynx impacts viral shedding following live attenuated influenza vaccine challenge in children. Cell Reports. Medicine. 2: 100465. PMID 35028607 DOI: 10.1016/j.xcrm.2021.100465 |
0.301 |
|
| 2021 |
Nakaya HI. Hidden in plain sight: uncovering the role of CREB1 in HIV-1 vaccine-induced immunity. Nature Immunology. 22: 1199-1200. PMID 34556875 DOI: 10.1038/s41590-021-01018-9 |
0.431 |
|
| 2021 |
Lüscher-Dias T, Conceição IM, Schuch V, Maracaja-Coutinho V, Amaral PP, Nakaya HI. Long non-coding RNAs associated with infection and vaccine-induced immunity. Essays in Biochemistry. 65: 657-669. PMID 34528687 DOI: 10.1042/EBC20200072 |
0.478 |
|
| 2021 |
Farias LP, Vitoriano-Souza J, Cardozo LE, Gama LDR, Singh Y, Miyasato PA, Almeida GT, Rodriguez D, Barbosa MMF, Fernandes RS, Barbosa TC, Neto APDS, Nakano E, Ho PL, Verjovski-Almeida S, ... Nakaya HI, et al. Systems Biology Analysis of the Radiation-Attenuated Schistosome Vaccine Reveals a Role for Growth Factors in Protection and Hemostasis Inhibition in Parasite Survival. Frontiers in Immunology. 12: 624191. PMID 33777004 DOI: 10.3389/fimmu.2021.624191 |
0.503 |
|
| 2021 |
Santoro F, Donato A, Lucchesi S, Sorgi S, Gerlini A, Haks MC, Ottenhoff THM, Gonzalez-Dias P, Consortium VE, Consortium VE, Nakaya HI, Huttner A, Siegrist CA, Medaglini D, Pozzi G. Human Transcriptomic Response to the VSV-Vectored Ebola Vaccine. Vaccines. 9. PMID 33498214 DOI: 10.3390/vaccines9020067 |
0.459 |
|
| 2021 |
Carniel BF, Marcon F, Rylance J, German EL, Zaidi S, Reine J, Negera E, Nikolaou E, Pojar S, Solórzano C, Collins AM, Connor V, Bogaert D, Gordon SB, Nakaya HI, et al. Pneumococcal colonization impairs mucosal immune responses to Live Attenuated Influenza Vaccine in adults. Jci Insight. PMID 33497364 DOI: 10.1172/jci.insight.141088 |
0.509 |
|
| 2020 |
Creighton R, Schuch V, Urbanski AH, Giddaluru J, Costa-Martins AG, Nakaya HI. Network vaccinology. Seminars in Immunology. 101420. PMID 33162295 DOI: 10.1016/j.smim.2020.101420 |
0.474 |
|
| 2020 |
Brandão WN, De Oliveira MG, Andreoni RT, Nakaya H, Farias AS, Peron J. Neuroinflammation at single cell level: What is new? Journal of Leukocyte Biology. PMID 32779279 DOI: 10.1002/Jlb.3Mr0620-035R |
0.313 |
|
| 2020 |
Lee EK, Tian H, Nakaya HI. Antigenicity prediction and vaccine recommendation of human influenza virus A (H3N2) using convolutional neural networks. Human Vaccines & Immunotherapeutics. 1-19. PMID 32750260 DOI: 10.1080/21645515.2020.1734397 |
0.398 |
|
| 2020 |
Sorgi S, Bonezi V, Dominguez MR, Gimenez AM, Dobrescu I, Boscardin S, Nakaya HI, Bargieri DY, Soares IS, Silveira ELV. São Paulo School of Advanced Sciences on Vaccines: an overview. The Journal of Venomous Animals and Toxins Including Tropical Diseases. 26: e20190061. PMID 32362926 DOI: 10.1590/1678-9199-JVATITD-2019-0061 |
0.43 |
|
| 2019 |
Gonzalez-Dias P, Lee EK, Sorgi S, de Lima DS, Urbanski AH, Silveira EL, Nakaya HI. Methods for predicting vaccine immunogenicity and reactogenicity. Human Vaccines & Immunotherapeutics. 1-8. PMID 31869262 DOI: 10.1080/21645515.2019.1697110 |
0.491 |
|
| 2019 |
Fabris AL, Nunes AV, Schuch V, de Paula-Silva M, Rocha G, Nakaya HI, Ho PL, Silveira ELV, Farsky SHP. Hydroquinone exposure alters the morphology of lymphoid organs in vaccinated C57Bl/6 mice. Environmental Pollution (Barking, Essex : 1987). 113554. PMID 31767231 DOI: 10.1016/j.envpol.2019.113554 |
0.475 |
|
| 2019 |
de Lima DS, Cardozo LE, Maracaja-Coutinho V, Suhrbier A, Mane K, Jeffries D, Silveira ELV, Amaral PP, Rappuoli R, de Silva TI, Nakaya HI. Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination. Proceedings of the National Academy of Sciences of the United States of America. PMID 31399544 DOI: 10.1073/pnas.1822046116 |
0.525 |
|
| 2018 |
Bittencourt NC, Leite JA, Silva ABIE, Pimenta TS, Silva-Filho JL, Cassiano GC, Lopes SCP, Dos-Santos JCK, Bourgard C, Nakaya HI, da Silva Ventura AMR, Lacerda MVG, Ferreira MU, Machado RLD, Albrecht L, et al. Genetic sequence characterization and naturally acquired immune response to Plasmodium vivax Rhoptry Neck Protein 2 (PvRON2). Malaria Journal. 17: 401. PMID 30382855 DOI: 10.1186/s12936-018-2543-7 |
0.355 |
|
| 2018 |
Caires-Júnior LC, Goulart E, Melo US, Araujo BSH, Alvizi L, Soares-Schanoski A, de Oliveira DF, Kobayashi GS, Griesi-Oliveira K, Musso CM, Amaral MS, daSilva LF, Astray RM, Suárez-Patiño SF, Ventini DC, ... ... Nakaya H, et al. Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells. Nature Communications. 9: 475. PMID 29396410 DOI: 10.1038/S41467-017-02790-9 |
0.3 |
|
| 2017 |
Blohmke CJ, Hill J, Darton TC, Carvalho-Burger M, Eustace A, Jones C, Schreiber F, Goodier MR, Dougan G, Nakaya HI, Pollard AJ. Induction of Cell Cycle and NK Cell Responses by Live-Attenuated Oral Vaccines against Typhoid Fever. Frontiers in Immunology. 8: 1276. PMID 29075261 DOI: 10.3389/fimmu.2017.01276 |
0.549 |
|
| 2017 |
Li S, Sullivan NL, Rouphael N, Yu T, Banton S, Maddur MS, McCausland M, Chiu C, Canniff J, Dubey S, Liu K, Tran V, Hagan T, Duraisingham S, Wieland A, ... ... Nakaya HI, et al. Metabolic Phenotypes of Response to Vaccination in Humans. Cell. PMID 28502771 DOI: 10.1016/J.Cell.2017.04.026 |
0.809 |
|
| 2017 |
Kazmin D, Nakaya HI, Lee EK, Johnson MJ, van der Most R, van den Berg RA, Ballou WR, Jongert E, Wille-Reece U, Ockenhouse C, Aderem A, Zak DE, Sadoff J, Hendriks J, Wrammert J, et al. Systems analysis of protective immune responses to RTS,S malaria vaccination in humans. Proceedings of the National Academy of Sciences of the United States of America. PMID 28193898 DOI: 10.1073/Pnas.1621489114 |
0.706 |
|
| 2016 |
Kasturi SP, Kozlowski PA, Nakaya HI, Burger MC, Russo P, Pham M, Kovalenkov Y, Silveira EL, Havenar-Daughton C, Burton SL, Kilgore KM, Johnson MJ, Nabi R, Legere T, Sher ZJ, et al. Adjuvanting an SIV vaccine with TLR ligands encapsulated in nanoparticles induces persistent antibody responses and enhanced protection in TRIM5α restrictive macaques. Journal of Virology. PMID 27928002 DOI: 10.1128/Jvi.01844-16 |
0.671 |
|
| 2016 |
Lever M, Silveira EL, Nakaya HI. Systems Vaccinology Applied to DNA Vaccines: Perspective and Challenges. Current Issues in Molecular Biology. 22: 1-16. PMID 27648510 DOI: 10.21775/cimb.022.001 |
0.463 |
|
| 2016 |
Ellebedy AH, Jackson KJ, Kissick HT, Nakaya HI, Davis CW, Roskin KM, McElroy AK, Oshansky CM, Elbein R, Thomas S, Lyon GM, Spiropoulou CF, Mehta AK, Thomas PG, Boyd SD, et al. Defining antigen-specific plasmablast and memory B cell subsets in human blood after viral infection or vaccination. Nature Immunology. PMID 27525369 DOI: 10.1038/Ni.3533 |
0.437 |
|
| 2016 |
Ravindran R, Loebbermann J, Nakaya HI, Khan N, Ma H, Gama L, Machiah DK, Lawson B, Hakimpour P, Wang YC, Li S, Sharma P, Kaufman RJ, Martinez J, Pulendran B. The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation. Nature. PMID 26982722 DOI: 10.1038/Nature17186 |
0.474 |
|
| 2016 |
Nakaya HI, Clutterbuck E, Kazmin D, Wang L, Cortese M, Bosinger SE, Patel NB, Zak DE, Aderem A, Dong T, Del Giudice G, Rappuoli R, Cerundolo V, Pollard AJ, Pulendran B, et al. Systems biology of immunity to MF59-adjuvanted versus nonadjuvanted trivalent seasonal influenza vaccines in early childhood. Proceedings of the National Academy of Sciences of the United States of America. 113: 1853-8. PMID 26755593 DOI: 10.1073/Pnas.1519690113 |
0.715 |
|
| 2016 |
Lee EK, Nakaya HI, Yuan F, Querec TD, Burel G, Pietz FH, Benecke BA, Pulendran B. Machine Learning for Predicting Vaccine Immunogenicity Interfaces. 46: 368-390. DOI: 10.1287/Inte.2016.0862 |
0.786 |
|
| 2015 |
Nakaya HI, Hagan T, Duraisingham SS, Lee EK, Kwissa M, Rouphael N, Frasca D, Gersten M, Mehta AK, Gaujoux R, Li GM, Gupta S, Ahmed R, Mulligan MJ, Shen-Orr S, et al. Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures. Immunity. 43: 1186-98. PMID 26682988 DOI: 10.1016/J.Immuni.2015.11.012 |
0.806 |
|
| 2015 |
Nakaya HI, Pulendran B. Vaccinology in the era of high-throughput biology. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 370. PMID 25964458 DOI: 10.1098/Rstb.2014.0146 |
0.71 |
|
| 2015 |
Nakaya HI, Bruna-Romero O. Is the gut microbiome key to modulating vaccine efficacy? Expert Review of Vaccines. 14: 777-9. PMID 25915555 DOI: 10.1586/14760584.2015.1040395 |
0.468 |
|
| 2015 |
Hagan T, Nakaya HI, Subramaniam S, Pulendran B. Systems vaccinology: Enabling rational vaccine design with systems biological approaches. Vaccine. PMID 25858860 DOI: 10.1016/J.Vaccine.2015.03.072 |
0.8 |
|
| 2015 |
Akondy RS, Johnson PL, Nakaya HI, Edupuganti S, Mulligan MJ, Lawson B, Miller JD, Pulendran B, Antia R, Ahmed R. Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination. Proceedings of the National Academy of Sciences of the United States of America. 112: 3050-5. PMID 25713354 DOI: 10.1073/Pnas.1500475112 |
0.621 |
|
| 2014 |
Oh JZ, Ravindran R, Chassaing B, Carvalho FA, Maddur MS, Bower M, Hakimpour P, Gill KP, Nakaya HI, Yarovinsky F, Sartor RB, Gewirtz AT, Pulendran B. TLR5-mediated sensing of gut microbiota is necessary for antibody responses to seasonal influenza vaccination. Immunity. 41: 478-92. PMID 25220212 DOI: 10.1016/J.Immuni.2014.08.009 |
0.7 |
|
| 2014 |
Kwissa M, Nakaya HI, Onlamoon N, Wrammert J, Villinger F, Perng GC, Yoksan S, Pattanapanyasat K, Chokephaibulkit K, Ahmed R, Pulendran B. Dengue virus infection induces expansion of a CD14(+)CD16(+) monocyte population that stimulates plasmablast differentiation. Cell Host & Microbe. 16: 115-27. PMID 24981333 DOI: 10.1016/J.Chom.2014.06.001 |
0.52 |
|
| 2014 |
Li S, Rouphael N, Duraisingham S, Romero-Steiner S, Presnell S, Davis C, Schmidt DS, Johnson SE, Milton A, Rajam G, Kasturi S, Carlone GM, Quinn C, Chaussabel D, Palucka AK, ... ... Nakaya HI, et al. Molecular signatures of antibody responses derived from a systems biology study of five human vaccines. Nature Immunology. 15: 195-204. PMID 24336226 DOI: 10.1038/Ni.2789 |
0.708 |
|
| 2014 |
Ravindran R, Khan N, Nakaya HI, Li S, Loebbermann J, Maddur MS, Park Y, Jones DP, Chappert P, Davoust J, Weiss DS, Virgin HW, Ron D, Pulendran B. Vaccine activation of the nutrient sensor GCN2 in dendritic cells enhances antigen presentation. Science (New York, N.Y.). 343: 313-7. PMID 24310610 DOI: 10.1126/Science.1246829 |
0.685 |
|
| 2014 |
Tan Y, Tamayo P, Nakaya H, Pulendran B, Mesirov JP, Haining WN. Gene signatures related to B-cell proliferation predict influenza vaccine-induced antibody response. European Journal of Immunology. 44: 285-95. PMID 24136404 DOI: 10.1002/Eji.201343657 |
0.686 |
|
| 2013 |
Pulendran B, Oh JZ, Nakaya HI, Ravindran R, Kazmin DA. Immunity to viruses: learning from successful human vaccines. Immunological Reviews. 255: 243-55. PMID 23947360 DOI: 10.1111/Imr.12099 |
0.716 |
|
| 2013 |
Li S, Nakaya HI, Kazmin DA, Oh JZ, Pulendran B. Systems biological approaches to measure and understand vaccine immunity in humans. Seminars in Immunology. 25: 209-18. PMID 23796714 DOI: 10.1016/J.Smim.2013.05.003 |
0.677 |
|
| 2013 |
Norris BA, Uebelhoer LS, Nakaya HI, Price AA, Grakoui A, Pulendran B. Chronic but not acute virus infection induces sustained expansion of myeloid suppressor cell numbers that inhibit viral-specific T cell immunity. Immunity. 38: 309-21. PMID 23438822 DOI: 10.1016/J.Immuni.2012.10.022 |
0.729 |
|
| 2013 |
Duraisingham SS, Rouphael N, Cavanagh MM, Nakaya HI, Goronzy JJ, Pulendran B. Systems biology of vaccination in the elderly. Current Topics in Microbiology and Immunology. 363: 117-42. PMID 22903566 DOI: 10.1007/82_2012_250 |
0.696 |
|
| 2012 |
Nakaya HI, Gardner J, Poo YS, Major L, Pulendran B, Suhrbier A. Gene profiling of Chikungunya virus arthritis in a mouse model reveals significant overlap with rheumatoid arthritis. Arthritis and Rheumatism. 64: 3553-63. PMID 22833339 DOI: 10.1002/Art.34631 |
0.417 |
|
| 2012 |
Jones CL, Sampson TR, Nakaya HI, Pulendran B, Weiss DS. Repression of bacterial lipoprotein production by Francisella novicida facilitates evasion of innate immune recognition. Cellular Microbiology. 14: 1531-43. PMID 22632124 DOI: 10.1111/J.1462-5822.2012.01816.X |
0.494 |
|
| 2012 |
Kwissa M, Nakaya HI, Oluoch H, Pulendran B. Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in nonhuman primates. Blood. 119: 2044-55. PMID 22246032 DOI: 10.1182/Blood-2011-10-388579 |
0.495 |
|
| 2012 |
Nakaya HI, Pulendran B. Systems vaccinology: its promise and challenge for HIV vaccine development. Current Opinion in Hiv and Aids. 7: 24-31. PMID 22156839 DOI: 10.1097/Coh.0B013E32834Dc37B |
0.671 |
|
| 2012 |
Nakaya HI, Li S, Pulendran B. Systems vaccinology: learning to compute the behavior of vaccine induced immunity. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 4: 193-205. PMID 22012654 DOI: 10.1002/Wsbm.163 |
0.636 |
|
| 2011 |
Nakaya HI, Wrammert J, Lee EK, Racioppi L, Marie-Kunze S, Haining WN, Means AR, Kasturi SP, Khan N, Li GM, McCausland M, Kanchan V, Kokko KE, Li S, Elbein R, et al. Systems biology of vaccination for seasonal influenza in humans. Nature Immunology. 12: 786-95. PMID 21743478 DOI: 10.1038/Ni.2067 |
0.681 |
|
| 2011 |
Duraiswamy J, Ibegbu CC, Masopust D, Miller JD, Araki K, Doho GH, Tata P, Gupta S, Zilliox MJ, Nakaya HI, Pulendran B, Haining WN, Freeman GJ, Ahmed R. Phenotype, function, and gene expression profiles of programmed death-1(hi) CD8 T cells in healthy human adults. Journal of Immunology (Baltimore, Md. : 1950). 186: 4200-12. PMID 21383243 DOI: 10.4049/Jimmunol.1001783 |
0.476 |
|
| 2011 |
Kasturi SP, Skountzou I, Albrecht RA, Koutsonanos D, Hua T, Nakaya HI, Ravindran R, Stewart S, Alam M, Kwissa M, Villinger F, Murthy N, Steel J, Jacob J, Hogan RJ, et al. Programming the magnitude and persistence of antibody responses with innate immunity. Nature. 470: 543-7. PMID 21350488 DOI: 10.1038/Nature09737 |
0.647 |
|
| 2010 |
Pulendran B, Li S, Nakaya HI. Systems vaccinology. Immunity. 33: 516-29. PMID 21029962 DOI: 10.1016/j.immuni.2010.10.006 |
0.707 |
|
| 2010 |
Manicassamy S, Reizis B, Ravindran R, Nakaya H, Salazar-Gonzalez RM, Wang YC, Pulendran B. Activation of beta-catenin in dendritic cells regulates immunity versus tolerance in the intestine. Science (New York, N.Y.). 329: 849-53. PMID 20705860 DOI: 10.1126/Science.1188510 |
0.692 |
|
| 2010 |
Tang H, Cao W, Kasturi SP, Ravindran R, Nakaya HI, Kundu K, Murthy N, Kepler TB, Malissen B, Pulendran B. The T helper type 2 response to cysteine proteases requires dendritic cell-basophil cooperation via ROS-mediated signaling. Nature Immunology. 11: 608-17. PMID 20495560 DOI: 10.1038/Ni.1883 |
0.498 |
|
| 2009 |
Querec TD, Akondy RS, Lee EK, Cao W, Nakaya HI, Teuwen D, Pirani A, Gernert K, Deng J, Marzolf B, Kennedy K, Wu H, Bennouna S, Oluoch H, Miller J, et al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nature Immunology. 10: 116-25. PMID 19029902 DOI: 10.1038/Ni.1688 |
0.791 |
|
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