Matthew K. Fujita, Ph.D. - Publications

Affiliations: 
University of Texas at Arlington, Arlington, TX, United States 

67 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nachman MW, Beckman EJ, Bowie RC, Cicero C, Conroy CJ, Dudley R, Hayes TB, Koo MS, Lacey EA, Martin CH, McGuire JA, Patton JL, Spencer CL, Tarvin RD, Wake MH, ... ... Fujita MK, et al. Specimen collection is essential for modern science. Plos Biology. 21: e3002318. PMID 37992027 DOI: 10.1371/journal.pbio.3002318  0.694
2023 Leaché AD, Davis HR, Feldman CR, Fujita MK, Singhal S. Repeated patterns of reptile diversification in Western North America supported by the Northern Alligator Lizard (Elgaria coerulea). The Journal of Heredity. PMID 37982433 DOI: 10.1093/jhered/esad073  0.683
2022 Mitra AT, Womack MC, Gower DJ, Streicher JW, Clark B, Bell RC, Schott RK, Fujita MK, Thomas KN. Ocular lens morphology is influenced by ecology and metamorphosis in frogs and toads. Proceedings. Biological Sciences. 289: 20220767. PMID 36382525 DOI: 10.1098/rspb.2022.0767  0.552
2022 Rivera D, Prates I, Caldwell JP, Rodrigues MT, Fujita MK. Testing assertions of widespread introgressive hybridization in a clade of neotropical toads with low mate selectivity (Rhinella granulosa species group). Heredity. PMID 36333595 DOI: 10.1038/s41437-022-00571-9  0.818
2022 Schott RK, Bell RC, Loew ER, Thomas KN, Gower DJ, Streicher JW, Fujita MK. Transcriptomic evidence for visual adaptation during the aquatic to terrestrial metamorphosis in leopard frogs. Bmc Biology. 20: 138. PMID 35761245 DOI: 10.1186/s12915-022-01341-z  0.503
2022 Maldonado J, Firneno TJ, Hall AS, Fujita M. Parthenogenesis Doubles the Rate of Amino Acid Substitution in Whiptail Mitochondria. Evolution; International Journal of Organic Evolution. PMID 35580923 DOI: 10.1111/evo.14509  0.54
2021 Karin BR, Oliver PM, Stubbs AL, Arifin U, Iskandar DT, Arida E, Oong Z, McGuire JA, Kraus F, Fujita MK, Ineich I, Ota H, Hathaway SA, Fisher RN. Whos your daddy? On the identity and distribution of the paternal hybrid ancestor of the parthenogenetic gecko Lepidodactylus lugubris (Reptilia: Squamata: Gekkonidae). Zootaxa. 4999: 87-100. PMID 34810501 DOI: 10.11646/zootaxa.4999.1.6  0.727
2021 Rivera D, Prates I, Firneno TJ, Trefaut Rodrigues M, Caldwell JP, Fujita MK. Phylogenomics, introgression, and demographic history of South American true toads (Rhinella). Molecular Ecology. PMID 34784086 DOI: 10.1111/mec.16280  0.819
2021 Firneno TJ, O'Neill JR, Itgen MW, Kihneman TA, Townsend JH, Fujita MK. Delimitation despite discordance: Evaluating the species limits of a confounding species complex in the face of mitonuclear discordance. Ecology and Evolution. 11: 12739-12753. PMID 34594535 DOI: 10.1002/ece3.8018  0.403
2021 Jaynes KE, Myers EA, Gvoždík V, Blackburn DC, Portik DM, Greenbaum E, Jongsma GFM, Rödel MO, Badjedjea G, Bamba-Kaya A, Baptista NL, Akuboy JB, Ernst R, Kouete MT, Kusamba C, ... ... Fujita MK, et al. Giant Tree Frog diversification in West and Central Africa: isolation by physical barriers, climate, and reproductive traits. Molecular Ecology. PMID 34516675 DOI: 10.1111/mec.16169  0.806
2021 Brunes TO, Lyra ML, Maldonado JA, Pellegrino KCM, Rodrigues MT, Fujita MK. The first mitochondrial genome of a South America parthenogenetic lizard (Squamata: Gymnophthalmidae). Mitochondrial Dna. Part B, Resources. 6: 2393-2395. PMID 34345705 DOI: 10.1080/23802359.2021.1951132  0.36
2020 Thomas KN, Gower DJ, Bell RC, Fujita MK, Schott RK, Streicher JW. Eye size and investment in frogs and toads correlate with adult habitat, activity pattern and breeding ecology. Proceedings. Biological Sciences. 287: 20201393. PMID 32962540 DOI: 10.1098/rspb.2020.1393  0.53
2020 O'Connell KA, Oaks JR, Hamidy A, Shaney KJ, Kurniawan N, Smith EN, Fujita MK. Impacts of the Toba eruption and montane forest expansion on diversification in Sumatran parachuting frogs (Rhacophorus). Molecular Ecology. PMID 32633832 DOI: 10.1111/Mec.15541  0.634
2020 Maldonado JA, Firneno TJ, Roelke CE, Rains ND, Mwgiri J, Fujita MK. Transcriptome sequencing reveals signatures of positive selection in the Spot-Tailed Earless Lizard. Plos One. 15: e0234504. PMID 32542006 DOI: 10.1371/Journal.Pone.0234504  0.482
2020 Firneno TJ, O'Neill JR, Portik DM, Emery AH, Townsend JH, Fujita MK. Finding complexity in complexes: assessing the causes of mitonuclear discordance in a problematic species complex of Mesoamerican toads. Molecular Ecology. PMID 32500624 DOI: 10.1111/Mec.15496  0.816
2020 Shaney KJ, Maldonado J, Smart U, Thammachoti P, Fujita M, Hamidy A, Kurniawan N, Harvey MB, Smith EN. Phylogeography of montane dragons could shed light on the history of forests and diversification processes on Sumatra. Molecular Phylogenetics and Evolution. 106840. PMID 32305510 DOI: 10.1016/J.Ympev.2020.106840  0.503
2020 Leaché AD, Oaks JR, Ofori-Boateng C, Fujita MK. Comparative phylogeography of West African amphibians and reptiles. Evolution; International Journal of Organic Evolution. PMID 32067219 DOI: 10.1111/Evo.13941  0.74
2019 O'Connell KA, Santo VD, Maldonado J, Molina E, Fujita MK. A Tale of Two Skates: Comparative Phylogeography of North American Skate Species with Implications for Conservation Copeia. 107: 297. DOI: 10.1643/Cg-18-114  0.683
2019 Leaché AD, Portik DM, Rivera D, Rödel M, Penner J, Gvoždík V, Greenbaum E, Jongsma GFM, Ofori‐Boateng C, Burger M, Eniang EA, Bell RC, Fujita MK. Exploring rain forest diversification using demographic model testing in the African foam‐nest treefrog Chiromantis rufescens Journal of Biogeography. 46: 2706-2721. DOI: 10.1111/Jbi.13716  0.751
2019 Krishnan S, Ofori-Boateng C, Fujita MK, Leaché AD. Geographic variation in West African Agama picticauda: insights from genetics, morphology and ecology African Journal of Herpetology. 68: 33-49. DOI: 10.1080/21564574.2018.1509139  0.706
2018 O'Connell KA, Hamidy A, Kurniawan N, Smith EN, Fujita MK. Synchronous diversification of parachuting frogs (Genus Rhacophorus) on Sumatra and Java. Molecular Phylogenetics and Evolution. PMID 29496542 DOI: 10.1016/J.Ympev.2018.02.003  0.694
2018 Charles KL, Bell RC, Blackburn DC, Burger M, Fujita MK, Gvoždík V, Jongsma GF, Kouete MT, Leaché AD, Portik DM. Sky, sea, and forest islands: Diversification in the African leaf-folding frog Afrixalus paradorsalis (Anura: Hyperoliidae) of the Lower Guineo-Congolian rain forest Journal of Biogeography. 45: 1781-1794. DOI: 10.1111/Jbi.13365  0.713
2018 O'Connell KA, Smart U, Smith EN, Hamidy A, Kurniawan N, Fujita MK. Within-island diversification underlies parachuting frog (Rhacophorus ) species accumulation on the Sunda Shelf Journal of Biogeography. 45: 929-940. DOI: 10.1111/Jbi.13162  0.649
2018 Roelke CE, Maldonado JA, Pope BW, Firneno TJ, Laduc TJ, Hibbitts TJ, Ryberg WA, Rains ND, Fujita MK. Mitochondrial genetic variation within and between Holbrookia lacerata lacerata and Holbrookia lacerata subcaudalis, the spot-tailed earless lizards of Texas Journal of Natural History. 52: 1017-1027. DOI: 10.1080/00222933.2018.1436726  0.434
2017 O'Connell KA, Streicher JW, Smith EN, Fujita MK. Geographical features are the predominant driver of molecular diversification in widely distributed North American Whipsnakes. Molecular Ecology. PMID 28802078 DOI: 10.1111/Mec.14295  0.66
2017 Portik DM, Leaché AD, Rivera D, Barej MF, Burger M, Hirschfeld M, Rödel MO, Blackburn DC, Fujita MK. Evaluating mechanisms of diversification in a Guineo-Congolian tropical forest frog using demographic model selection. Molecular Ecology. PMID 28748565 DOI: 10.1111/Mec.14266  0.784
2017 Schield DR, Adams RH, Card DC, Perry BW, Pasquesi GM, Jezkova T, Portik DM, Andrew AL, Spencer CL, Sanchez EE, Fujita MK, Mackessy SP, Castoe TA. Insight into the roles of selection in speciation from genomic patterns of divergence and introgression in secondary contact in venomous rattlesnakes. Ecology and Evolution. 7: 3951-3966. PMID 28616190 DOI: 10.1002/Ece3.2996  0.803
2017 SCHARGEL WE, RIVAS GA, GARCÍA-PÉREZ JE, RIVERO-BLANCO C, CHIPPINDALE PT, FUJITA MK. A new species of Gonatodes (Squamata: Sphaerodactylidae) from the western versant of the Cordillera de Mérida, Venezuela Zootaxa. 4291: 549. DOI: 10.11646/Zootaxa.4291.3.7  0.742
2017 O'Connell KA, Smith EN, Shaney KJ, Arifin U, Kurniawan N, Sidik I, Fujita MK. Coalescent species delimitation of a Sumatran parachuting frog Zoologica Scripta. 47: 33-43. DOI: 10.1111/Zsc.12248  0.638
2016 Leaché AD, Grummer JA, Miller M, Krishnan S, Fujita MK, Böhme W, Schmitz A, Lebreton M, Ineich I, Chirio L, Ofori-boateng C, Eniang EA, Greenbaum E, Rödel M, Wagner P. Bayesian inference of species diffusion in the West AfricanAgama agamaspecies group (Reptilia, Agamidae) Systematics and Biodiversity. 15: 192-203. DOI: 10.1080/14772000.2016.1238018  0.699
2015 Moritz C, Fujita MK, Rosauer D, Agudo R, Bourke G, Doughty P, Palmer R, Pepper M, Potter S, Pratt R, Scott M, Tonione M, Donnellan S. Multilocus phylogeography reveals nested endemism in a gecko across the monsoonal tropics of Australia. Molecular Ecology. PMID 26671627 DOI: 10.1111/Mec.13511  0.497
2015 Georges A, Li Q, Lian J, O'Meally D, Deakin J, Wang Z, Zhang P, Fujita M, Patel HR, Holleley CE, Zhou Y, Zhang X, Matsubara K, Waters P, Graves JA, et al. High-coverage sequencing and annotated assembly of the genome of the Australian dragon lizard Pogona vitticeps. Gigascience. 4: 45. PMID 26421146 DOI: 10.1186/S13742-015-0085-2  0.356
2015 Meik JM, Streicher JW, Lawing AM, Flores-Villela O, Fujita MK. Limitations of Climatic Data for Inferring Species Boundaries: Insights from Speckled Rattlesnakes. Plos One. 10: e0131435. PMID 26107178 DOI: 10.1371/Journal.Pone.0131435  0.447
2015 Rodríguez-Robles JA, Jezkova T, Fujita MK, Tolson PJ, García MA. Genetic divergence and diversity in the Mona and Virgin Islands Boas, Chilabothrus monensis (Epicrates monensis) (Serpentes: Boidae), West Indian snakes of special conservation concern. Molecular Phylogenetics and Evolution. 88: 144-53. PMID 25837733 DOI: 10.1016/J.Ympev.2015.03.019  0.42
2014 Li C, Zhang Y, Li J, Kong L, Hu H, Pan H, Xu L, Deng Y, Li Q, Jin L, Yu H, Chen Y, Liu B, Yang L, Liu S, ... ... Fujita MK, et al. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment. Gigascience. 3: 27. PMID 25671092 DOI: 10.1186/2047-217X-3-27  0.628
2014 Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, et al. Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs. Science (New York, N.Y.). 346: 1254449. PMID 25504731 DOI: 10.1126/Science.1254449  0.611
2014 Card DC, Schield DR, Reyes-Velasco J, Fujita MK, Andrew AL, Oyler-McCance SJ, Fike JA, Tomback DF, Ruggiero RP, Castoe TA. Two low coverage bird genomes and a comparison of reference-guided versus de novo genome assemblies. Plos One. 9: e106649. PMID 25192061 DOI: 10.1371/Journal.Pone.0106649  0.402
2014 Streicher JW, Devitt TJ, Goldberg CS, Malone JH, Blackmon H, Fujita MK. Diversification and asymmetrical gene flow across time and space: lineage sorting and hybridization in polytypic barking frogs. Molecular Ecology. 23: 3273-91. PMID 24891255 DOI: 10.1111/Mec.12814  0.794
2014 Leaché AD, Fujita MK, Minin VN, Bouckaert RR. Species delimitation using genome-wide SNP data. Systematic Biology. 63: 534-42. PMID 24627183 DOI: 10.1093/Sysbio/Syu018  0.739
2014 Rheindt FE, Fujita MK, Wilton PR, Edwards SV. Introgression and phenotypic assimilation in Zimmerius flycatchers (Tyrannidae): population genetic and phylogenetic inferences from genome-wide SNPs. Systematic Biology. 63: 134-52. PMID 24304652 DOI: 10.1093/Sysbio/Syt070  0.611
2014 Castoe TA, De Koning APJ, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes (Proceedings of the National Academy of Sciences of the United States of America (2013) 110, 51, (20645-20650) DOI: 10.1073/pnas. 1314475110) Proceedings of the National Academy of Sciences of the United States of America. 111: 3194. DOI: 10.1073/Pnas.1324133111  0.334
2014 Wagner P, Leaché AD, Fujita MK. Description of four new West African forest geckos of the Hemidactylus fasciatus Gray, 1842 complex, revealed by coalescent species delimitation Bonn Zoological Bulletin. 63: 1-14.  0.664
2013 Castoe TA, de Koning AP, Hall KT, Card DC, Schield DR, Fujita MK, Ruggiero RP, Degner JF, Daza JM, Gu W, Reyes-Velasco J, Shaney KJ, Castoe JM, Fox SE, Poole AW, et al. The Burmese python genome reveals the molecular basis for extreme adaptation in snakes. Proceedings of the National Academy of Sciences of the United States of America. 110: 20645-50. PMID 24297902 DOI: 10.1073/Pnas.1314475110  0.395
2013 Pepper M, Doughty P, Fujita MK, Moritz C, Keogh JS. Speciation on the rocks: integrated systematics of the Heteronotia spelea species complex (Gekkota; Reptilia) from Western and Central Australia. Plos One. 8: e78110. PMID 24244289 DOI: 10.1371/Journal.Pone.0078110  0.471
2013 Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, ... ... Fujita MK, et al. The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage. Genome Biology. 14: R28. PMID 23537068 DOI: 10.1186/Gb-2013-14-3-R28  0.748
2013 Rands CM, Darling A, Fujita M, Kong L, Webster MT, Clabaut C, Emes RD, Heger A, Meader S, Hawkins MB, Eisen MB, Teiling C, Affourtit J, Boese B, Grant PR, et al. Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence. Bmc Genomics. 14: 95. PMID 23402223 DOI: 10.1186/1471-2164-14-95  0.609
2012 Castoe TA, Braun EL, Bronikowski AM, Cox CL, Rabosky AR, Jason de Koning AP, Dobry J, Fujita MK, Giorgianni MW, Hargreaves A, Henkel CV, Mackessy SP, O'Meally D, Rokyta DR, Secor SM, et al. Report from the first snake genomics and integrative biology meeting. Standards in Genomic Sciences. 7: 150-2. PMID 23451292 DOI: 10.4056/Sigs.3106480  0.351
2012 Fong JJ, Brown JM, Fujita MK, Boussau B. A phylogenomic approach to vertebrate phylogeny supports a turtle-archosaur affinity and a possible paraphyletic lissamphibia. Plos One. 7: e48990. PMID 23145043 DOI: 10.1371/Journal.Pone.0048990  0.633
2012 Fujita MK, Leaché AD, Burbrink FT, McGuire JA, Moritz C. Coalescent-based species delimitation in an integrative taxonomy. Trends in Ecology & Evolution. 27: 480-8. PMID 22633974 DOI: 10.1016/J.Tree.2012.04.012  0.803
2012 St John JA, Braun EL, Isberg SR, Miles LG, Chong AY, Gongora J, Dalzell P, Moran C, Bed'hom B, Abzhanov A, Burgess SC, Cooksey AM, Castoe TA, Crawford NG, Densmore LD, ... ... Fujita MK, et al. Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes. Genome Biology. 13: 415. PMID 22293439 DOI: 10.1186/Gb-2012-13-1-415  0.534
2012 Roberts JA, Vo HD, Fujita MK, Moritz C, Kearney M. Physiological implications of genomic state in parthenogenetic lizards of reciprocal hybrid origin. Journal of Evolutionary Biology. 25: 252-63. PMID 22192477 DOI: 10.1111/J.1420-9101.2011.02438.X  0.401
2012 Rödel MO, Barej MF, Hillers A, Leaché AD, Kouamé NG, Ofori-Boateng C, Assemian NE, Tohé B, Penner J, Hirschfeld M, Doumbia J, Gonwouo LN, Nopper J, Brede C, Diaz R, ... Fujita MK, et al. The genus Astylosternus in the Upper Guinea rainforests, west africa, with the description of a new species (amphibia: Anura: Arthroleptidae) Zootaxa. 1-29. DOI: 10.5281/Zenodo.280508  0.712
2011 Boussau B, Brown JM, Fujita MK. Nonadaptive evolution of mitochondrial genome size. Evolution; International Journal of Organic Evolution. 65: 2706-11. PMID 21884067 DOI: 10.1111/J.1558-5646.2011.01322.X  0.424
2011 Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, ... ... Fujita MK, et al. The genome of the green anole lizard and a comparative analysis with birds and mammals. Nature. 477: 587-91. PMID 21881562 DOI: 10.1038/Nature10390  0.788
2011 Pepper M, Ho SY, Fujita MK, Scott Keogh J. The genetic legacy of aridification: climate cycling fostered lizard diversification in Australian montane refugia and left low-lying deserts genetically depauperate. Molecular Phylogenetics and Evolution. 61: 750-9. PMID 21871574 DOI: 10.1016/J.Ympev.2011.08.009  0.415
2011 Fujita MK, Edwards SV, Ponting CP. The Anolis lizard genome: an amniote genome without isochores. Genome Biology and Evolution. 3: 974-84. PMID 21795750 DOI: 10.1093/Gbe/Evr072  0.669
2011 Fong JJ, Fujita MK. Evaluating phylogenetic informativeness and data-type usage for new protein-coding genes across Vertebrata. Molecular Phylogenetics and Evolution. 61: 300-7. PMID 21742044 DOI: 10.1016/J.Ympev.2011.06.016  0.606
2011 Pepper M, Fujita MK, Moritz C, Keogh JS. Palaeoclimate change drove diversification among isolated mountain refugia in the Australian arid zone. Molecular Ecology. 20: 1529-45. PMID 21371147 DOI: 10.1111/J.1365-294X.2011.05036.X  0.463
2011 Janes DE, Chapus C, Gondo Y, Clayton DF, Sinha S, Blatti CA, Organ CL, Fujita MK, Balakrishnan CN, Edwards SV. Reptiles and mammals have differentially retained long conserved noncoding sequences from the amniote ancestor. Genome Biology and Evolution. 3: 102-13. PMID 21183607 DOI: 10.1093/Gbe/Evq087  0.803
2011 Fujita MK, Papenfuss TJ. Molecular systematics of Stenodactylus (Gekkonidae), an Afro-Arabian gecko species complex. Molecular Phylogenetics and Evolution. 58: 71-5. PMID 21035555 DOI: 10.1016/J.Ympev.2010.10.014  0.471
2011 Fujita MK, Leaché AD. A coalescent perspective on delimiting and naming species: A reply to Bauer et al. Proceedings of the Royal Society B: Biological Sciences. 278: 493-495. DOI: 10.1098/Rspb.2010.1864  0.659
2010 Janes DE, Organ CL, Fujita MK, Shedlock AM, Edwards SV. Genome evolution in Reptilia, the sister group of mammals. Annual Review of Genomics and Human Genetics. 11: 239-64. PMID 20590429 DOI: 10.1146/Annurev-Genom-082509-141646  0.753
2010 Leaché AD, Fujita MK. Bayesian species delimitation in West African forest geckos (Hemidactylus fasciatus). Proceedings. Biological Sciences / the Royal Society. 277: 3071-7. PMID 20519219 DOI: 10.1098/Rspb.2010.0662  0.718
2010 Fujita MK, McGuire JA, Donnellan SC, Moritz C. Diversification and persistence at the arid-monsoonal interface: australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae). Evolution; International Journal of Organic Evolution. 64: 2293-314. PMID 20298463 DOI: 10.1111/J.1558-5646.2010.00993.X  0.727
2009 Fujita MK, Moritz C. Origin and evolution of parthenogenetic genomes in lizards: current state and future directions. Cytogenetic and Genome Research. 127: 261-72. PMID 20215731 DOI: 10.1159/000295177  0.425
2007 Fujita MK, Boore JL, Moritz C. Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae). Molecular Biology and Evolution. 24: 2775-86. PMID 17921488 DOI: 10.1093/Molbev/Msm212  0.397
2004 Fujita MK, Engstrom TN, Starkey DE, Shaffer HB. Turtle phylogeny: insights from a novel nuclear intron. Molecular Phylogenetics and Evolution. 31: 1031-40. PMID 15120399 DOI: 10.1016/J.Ympev.2003.09.016  0.59
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