Barry Smith, PhD - Publications

Affiliations: 
1994- Philosophy State University of New York, Buffalo, Buffalo, NY, United States 
Area:
ontology
Website:
http://ontology.buffalo.edu/smith

66 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 He Y, Wang H, Zheng J, Beiting DP, Masci AM, Yu H, Liu K, Wu J, Curtis JL, Smith B, Alekseyenko AV, Obeid JS. OHMI: the ontology of host-microbiome interactions. Journal of Biomedical Semantics. 10: 25. PMID 31888755 DOI: 10.1186/S13326-019-0217-1  0.303
2016 Natale DA, Arighi CN, Blake JA, Bona J, Chen C, Chen SC, Christie KR, Cowart J, D'Eustachio P, Diehl AD, Drabkin HJ, Duncan WD, Huang H, Ren J, Ross K, ... ... Smith B, et al. Protein Ontology (PRO): enhancing and scaling up the representation of protein entities. Nucleic Acids Research. PMID 27899649 DOI: 10.1093/Nar/Gkw1075  0.306
2016 Huang J, Eilbeck K, Smith B, Blake JA, Dou D, Huang W, Natale DA, Ruttenberg A, Huan J, Zimmermann MT, Jiang G, Lin Y, Wu B, Strachan HJ, He Y, et al. The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology. Journal of Biomedical Semantics. 7: 24. PMID 27152146 DOI: 10.1186/S13326-016-0066-0  0.314
2016 Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, ... ... Smith B, et al. The Ontology for Biomedical Investigations. Plos One. 11: e0154556. PMID 27128319 DOI: 10.1371/Journal.Pone.0154556  0.379
2016 Spear AD, Ceusters W, Smith B. Functions in Basic Formal Ontology Applied Ontology. 11: 103-128. DOI: 10.3233/Ao-160164  0.323
2015 Smith B, Arabandi S, Brochhausen M, Calhoun M, Ciccarese P, Doyle S, Gibaud B, Goldberg I, Kahn CE, Overton J, Tomaszewski J, Gurcan M. Biomedical imaging ontologies: A survey and proposal for future work. Journal of Pathology Informatics. 6: 37. PMID 26167381 DOI: 10.4103/2153-3539.159214  0.311
2015 Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, ... ... Smith B, et al. Finding our way through phenotypes. Plos Biology. 13: e1002033. PMID 25562316 DOI: 10.1371/Journal.Pbio.1002033  0.326
2014 Hastings J, Frishkoff GA, Smith B, Jensen M, Poldrack RA, Lomax J, Bandrowski A, Imam F, Turner JA, Martone ME. Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies. Frontiers in Neuroinformatics. 8: 62. PMID 24999329 DOI: 10.3389/Fninf.2014.00062  0.306
2014 Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, ... ... Smith B, et al. Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies. Plos One. 9: e89606. PMID 24595056 DOI: 10.1371/Journal.Pone.0089606  0.353
2013 Buttigieg PL, Morrison N, Smith B, Mungall CJ, Lewis SE. The environment ontology: contextualising biological and biomedical entities. Journal of Biomedical Semantics. 4: 43. PMID 24330602 DOI: 10.1186/2041-1480-4-43  0.356
2013 Jensen M, Cox AP, Chaudhry N, Ng M, Sule D, Duncan W, Ray P, Weinstock-Guttman B, Smith B, Ruttenberg A, Szigeti K, Diehl AD. The neurological disease ontology. Journal of Biomedical Semantics. 4: 42. PMID 24314207 DOI: 10.1186/2041-1480-4-42  0.3
2012 Smith B. CLASSIFYING PROCESSES: AN ESSAY IN APPLIED ONTOLOGY. Ratio. 25: 463-488. PMID 23888086 DOI: 10.1111/J.1467-9329.2012.00557.X  0.37
2012 Walls RL, Athreya B, Cooper L, Elser J, Gandolfo MA, Jaiswal P, Mungall CJ, Preece J, Rensing S, Smith B, Stevenson DW. Ontologies as integrative tools for plant science. American Journal of Botany. 99: 1263-75. PMID 22847540 DOI: 10.3732/Ajb.1200222  0.309
2012 Ai JY, Smith B, Wong DT. Bioinformatics advances in saliva diagnostics. International Journal of Oral Science. 4: 85-7. PMID 22699264 DOI: 10.1038/Ijos.2012.26  0.319
2012 Musen MA, Noy NF, Shah NH, Whetzel PL, Chute CG, Story MA, Smith B. The National Center for Biomedical Ontology. Journal of the American Medical Informatics Association : Jamia. 19: 190-5. PMID 22081220 DOI: 10.1136/Amiajnl-2011-000523  0.339
2010 Smith B, Ceusters W. Ontological realism: A methodology for coordinated evolution of scientific ontologies. Applied Ontology. 5: 139-188. PMID 21637730 DOI: 10.3233/Ao-2010-0079  0.362
2010 Klein GO, Smith B. Concept Systems and Ontologies: Recommendations for Basic Terminology. Transactions of the Japanese Society For Artificial Intelligence = Jinko Chino Gakkai Ronbunshi. 25: 433-441. PMID 21308002 DOI: 10.1527/Tjsai.25.433  0.368
2010 Ceusters W, Smith B. Foundations for a realist ontology of mental disease. Journal of Biomedical Semantics. 1: 10. PMID 21143905 DOI: 10.1186/2041-1480-1-10  0.307
2010 Smith B, Goldberg LJ, Ruttenberg A, Glick M. Ontology and the future of dental research informatics. Journal of the American Dental Association (1939). 141: 1173-5. PMID 20884915 DOI: 10.14219/Jada.Archive.2010.0031  0.389
2010 Ai J, Smith B, Wong DT. Saliva Ontology: an ontology-based framework for a Salivaomics Knowledge Base. Bmc Bioinformatics. 11: 302. PMID 20525291 DOI: 10.1186/1471-2105-11-302  0.349
2010 Smith B, Brochhausen M. Putting biomedical ontologies to work. Methods of Information in Medicine. 49: 135-40. PMID 20135080 DOI: 10.3414/Me9302  0.302
2009 Schulz S, Stenzhorn H, Boeker M, Smith B. Strengths and limitations of formal ontologies in the biomedical domain. Revista Electronica De Comunicacao, Informacao & Inovacao Em Saude : Reciis. 3: 31-45. PMID 20640238 DOI: 10.3395/Reciis.V3I1.241En  0.359
2009 Schober D, Smith B, Lewis SE, Kusnierczyk W, Lomax J, Mungall C, Taylor CF, Rocca-Serra P, Sansone SA. Survey-based naming conventions for use in OBO Foundry ontology development. Bmc Bioinformatics. 10: 125. PMID 19397794 DOI: 10.1186/1471-2105-10-125  0.343
2009 Koepsell D, Arp R, Fostel J, Smith B. Creating a controlled vocabulary for the ethics of human research: towards a biomedical ethics ontology. Journal of Empirical Research On Human Research Ethics : Jerhre. 4: 43-58. PMID 19374479 DOI: 10.1525/Jer.2009.4.1.43  0.345
2009 Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG. An improved ontological representation of dendritic cells as a paradigm for all cell types. Bmc Bioinformatics. 10: 70. PMID 19243617 DOI: 10.1186/1471-2105-10-70  0.324
2009 Schulz S, Stenzhorn H, Boeker M, Smith B. Vantagens e limitações das ontologias formais na área biomédica Reciis. 3: 1001. DOI: 10.3395/Reciis.V3I1.818  0.36
2009 Bittner T, Donnelly M, Smith B. A spatio-temporal ontology for geographic information integration International Journal of Geographical Information Science. 23: 765-798. DOI: 10.1080/13658810701776767  0.34
2009 Smith B. Toward a Realistic Science of Environments Ecological Psychology. 21: 121-130. DOI: 10.1080/10407410902877090  0.305
2009 Grenon P, Smith B. Foundations of an ontology of philosophy Synthese. 182: 185-204. DOI: 10.1007/S11229-009-9658-X  0.322
2008 Stenzhorn H, Schulz S, Boeker M, Smith B. Adapting Clinical Ontologies in Real-World Environments. Journal of Universal Computer Science : J. Ucs. 14: 3767-3780. PMID 20390048 DOI: 10.3217/Jucs-014-22-3767  0.304
2008 Hill DP, Smith B, McAndrews-Hill MS, Blake JA. Gene Ontology annotations: What they mean and where they come from Bmc Bioinformatics. 9. PMID 18460184 DOI: 10.1186/1471-2105-9-S5-S2  0.343
2008 Arp R, Smith B. Function, Role and Disposition in Basic Formal Ontology Nature Precedings. 1-1. DOI: 10.1038/Npre.2008.1941.1  0.311
2007 Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, et al. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. Nature Biotechnology. 25: 1251-5. PMID 17989687 DOI: 10.1038/Nbt1346  0.355
2006 Whetzel PL, Brinkman RR, Causton HC, Fan L, Field D, Fostel J, Fragoso G, Gray T, Heiskanen M, Hernandez-Boussard T, Morrison N, Parkinson H, Rocca-Serra P, Sansone SA, Schober D, ... Smith B, et al. Development of FuGO: an ontology for functional genomics investigations. Omics : a Journal of Integrative Biology. 10: 199-204. PMID 16901226 DOI: 10.1089/Omi.2006.10.199  0.311
2006 Rubin DL, Lewis SE, Mungall CJ, Misra S, Westerfield M, Ashburner M, Sim I, Chute CG, Solbrig H, Storey MA, Smith B, Day-Richter J, Noy NF, Musen MA. National Center for Biomedical Ontology: advancing biomedicine through structured organization of scientific knowledge. Omics : a Journal of Integrative Biology. 10: 185-98. PMID 16901225 DOI: 10.1089/Omi.2006.10.185  0.354
2006 Köhler J, Munn K, Rüegg A, Skusa A, Smith B. Quality control for terms and definitions in ontologies and taxonomies. Bmc Bioinformatics. 7: 212. PMID 16623942 DOI: 10.1186/1471-2105-7-212  0.311
2006 Fellbaum C, Hahn U, Smith B. Towards new information resources for public health--from WordNet to MedicalWordNet. Journal of Biomedical Informatics. 39: 321-32. PMID 16298171 DOI: 10.1016/J.Jbi.2005.09.004  0.31
2006 Smith B. From concepts to clinical reality: an essay on the benchmarking of biomedical terminologies. Journal of Biomedical Informatics. 39: 288-98. PMID 16293444 DOI: 10.1016/J.Jbi.2005.09.005  0.34
2006 Simon J, Dos Santos M, Fielding J, Smith B. Formal ontology for natural language processing and the integration of biomedical databases. International Journal of Medical Informatics. 75: 224-31. PMID 16153885 DOI: 10.1016/J.Ijmedinf.2005.07.015  0.378
2005 Smith B, Ceusters W, Klagges B, Köhler J, Kumar A, Lomax J, Mungall C, Neuhaus F, Rector AL, Rosse C. Relations in biomedical ontologies Genome Biology. 6. PMID 15892874 DOI: 10.1186/Gb-2005-6-5-R46  0.32
2005 Smith B, Grenon P. The Cornucopia of Formal-Ontological Relations Dialectica. 58: 279-296. DOI: 10.1111/J.1746-8361.2004.Tb00305.X  0.322
2004 Kumar A, Smith B, Novotny DD. Biomedical informatics and granularity. Comparative and Functional Genomics. 5: 501-8. PMID 18629139 DOI: 10.1002/Cfg.429  0.313
2004 Verschelde J, Dos Santos MC, Deray T, Smith B, Ceusters W. Ontology-Assisted Database Integration to Support Natural Language Processing and Biomedical Data-mining Journal of Integrative Bioinformatics. 1: 1-10. DOI: 10.1515/Jib-2004-1  0.343
2004 Smith B, Kumar A. Controlled vocabularies in bioinformatics: a case study in the gene ontology Drug Discovery Today: Biosilico. 2: 246-252. DOI: 10.1016/S1741-8364(04)02424-2  0.324
2003 Smith B, Ceusters W. Towards industrial strength philosophy: how analytical ontology can help medical informatics Interdisciplinary Science Reviews. 28: 106-111. DOI: 10.1179/030801803225010421  0.312
2003 Smith B, Mark DM. Do Mountains Exist? Towards an Ontology of Landforms Environment and Planning B: Planning and Design. 30: 411-427. DOI: 10.1068/B12821  0.334
2003 Kumar A, Smith B. The Universal Medical Language System and the Gene Ontology: Some Critical Reflections Lecture Notes in Computer Science. 135-148. DOI: 10.1007/978-3-540-39451-8_11  0.355
2002 Smith B, Varzi AC. Surrounding space: The ontology of organism-environment relations Theory in Biosciences. 121: 139-162. DOI: 10.1078/1431-7613-00053  0.312
1999 Smith B, Varzi AC. The formal structure of ecological contexts Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1688: 339-350. DOI: 10.1007/3-540-48315-2_26  0.327
1998 Smith B, Mark D. Ontology With Human subjects Testing:. American Journal of Economics and Sociology. 58: 245-312. DOI: 10.1111/J.1536-7150.1998.Tb03471.X  0.373
1997 Smith B. Brentano and Kafka Axiomathes. 8: 83-104. DOI: 10.1007/Bf02681882  0.305
1995 Smith B. Formal ontology, common sense and cognitive science International Journal of Human-Computer Studies. 43: 641-667. DOI: 10.1006/Ijhc.1995.1067  0.309
1994 Smith B, Casati R. Naive physics Philosophical Psychology. 7: 227-247. DOI: 10.1080/09515089408573121  0.47
1993 Smith B. Putting the World Back into Semantics Grazer Philosophische Studien. 44: 91-109. DOI: 10.5840/Gps19934435  0.309
1993 Burkhardt H, Smith B. Handbook of Metaphysics and Ontology. The Philosophical Quarterly. 43: 120. DOI: 10.2307/2219954  0.345
1991 Smith B. German philosophy: Language and style Topoi. 10: 155-161. DOI: 10.1007/Bf00141336  0.311
1989 Smith B. Logic and the Sachverhalt The Monist. 72: 52-69. DOI: 10.5840/Monist19897212  0.329
1989 Smith B. The primacy of place: An investigation in Brentanian ontology Topoi. 8: 43-51. DOI: 10.1007/Bf00138678  0.353
1987 Schuhmann K, Smith B. Questions: An Essay in Daubertian Phenomenology Philosophy and Phenomenological Research. 47: 353. DOI: 10.2307/2107595  0.333
1986 Mulligan K, Smith B. A relational theory of the act Topoi. 5: 115-130. DOI: 10.1007/Bf00139225  0.335
1985 Berger G, Smith B. Parts and Moments: Studies in Logic and Formal Ontology. NoûS. 19: 115. DOI: 10.2307/2215133  0.323
1985 Mulligan K, Smith B, Chisholm RM, Baumgartner W. Franz Brentano on the Ontology of Mind Philosophy and Phenomenological Research. 45: 627. DOI: 10.2307/2107571  0.332
1983 Smith B, Mulligan K. Framework for formal ontology Topoi. 2: 73-85. DOI: 10.1007/Bf00139703  0.35
1981 Smith B, Murray D. Logic, Form and Matter Aristotelian Society Supplementary Volume. 55: 47-74. DOI: 10.1093/Aristoteliansupp/55.1.47  0.305
1978 Smith B. Law and Eschatology in Wittgenstein’s Early Thought Inquiry (United Kingdom). 21: 425-441. DOI: 10.1080/00201747808601848  0.307
1978 Smith B. Frege and Husserl: The ontology of reference Journal of the British Society For Phenomenology. 9: 111-125. DOI: 10.1080/00071773.1978.11006527  0.327
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