Wei Li - Publications

Affiliations: 
Department of Molecular and Cellular Biology Baylor College of Medicine, Houston, TX 

186 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Wang Q, Li X, Guo C, Wen L, Deng Z, Zhang Z, Li W, Liu T, Guo Y. Senescence-Related Receptor Kinase 1 (SENRK1) functions downstream of WRKY53 in regulating leaf senescence in Arabidopsis. Journal of Experimental Botany. PMID 37351601 DOI: 10.1093/jxb/erad240  0.307
2023 Albadari N, Xie Y, Liu T, Wang R, Gu L, Zhou M, Wu Z, Li W. Synthesis and biological evaluation of dual MDM2/XIAP inhibitors based on the tetrahydroquinoline scaffold. European Journal of Medicinal Chemistry. 255: 115423. PMID 37130471 DOI: 10.1016/j.ejmech.2023.115423  0.32
2022 Liu T, Gu L, Wu Z, Albadari N, Li W, Zhou M. MYCN mRNA degradation and cancer suppression by a selective small-molecule inhibitor in MYCN-amplified neuroblastoma. Frontiers in Oncology. 12: 1058726. PMID 36505784 DOI: 10.3389/fonc.2022.1058726  0.313
2022 Liao Y, Chen CH, Xiao T, de la Peña Avalos B, Dray EV, Cai C, Gao S, Shah N, Zhang Z, Feit A, Xue P, Liu Z, Yang M, Lee JH, Xu H, ... Li W, et al. Inhibition of EZH2 transactivation function sensitizes solid tumors to genotoxic stress. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35031563 DOI: 10.1073/pnas.2105898119  0.497
2021 Niu S, Li J, Bo W, Yang W, Zuccolo A, Giacomello S, Chen X, Han F, Yang J, Song Y, Nie Y, Zhou B, Wang P, Zuo Q, Zhang H, ... ... Li W, ... ... Li W, et al. The Chinese pine genome and methylome unveil key features of conifer evolution. Cell. PMID 34965378 DOI: 10.1016/j.cell.2021.12.006  0.364
2021 Yin K, Qu Y, Kooi SE, Li W, Feng J, Ratto JA, Joannopoulos JD, Soljačić M, Shen Y. Enabling Manufacturable Optical Broadband Angular-Range Selective Films. Acs Nano. PMID 34860001 DOI: 10.1021/acsnano.1c07417  0.139
2021 Zhu B, Li W, Zhang Q, Li D, Liu X, Wang Y, Xu N, Wu Z, Li J, Li X, Catrysse PB, Xu W, Fan S, Zhu J. Subambient daytime radiative cooling textile based on nanoprocessed silk. Nature Nanotechnology. PMID 34750560 DOI: 10.1038/s41565-021-00987-0  0.145
2021 Shi B, Li W, Song Y, Wang Z, Ju R, Ulman A, Hu J, Palomba F, Zhao Y, Le JP, Jarrard W, Dimoff D, Digman MA, Gratton E, Zang C, et al. UTX condensation underlies its tumour-suppressive activity. Nature. PMID 34526716 DOI: 10.1038/s41586-021-03903-7  0.51
2020 Li W, Buddhiraju S, Fan S. Thermodynamic limits for simultaneous energy harvesting from the hot sun and cold outer space. Light, Science & Applications. 9: 68. PMID 33893271 DOI: 10.1038/s41377-020-0296-x  0.113
2020 Li D, Liu X, Li W, Lin Z, Zhu B, Li Z, Li J, Li B, Fan S, Xie J, Zhu J. Scalable and hierarchically designed polymer film as a selective thermal emitter for high-performance all-day radiative cooling. Nature Nanotechnology. PMID 33199884 DOI: 10.1038/s41565-020-00800-4  0.235
2020 Xu L, Liu X, Peng F, Zhang W, Zheng L, Ding Y, Gu T, Lv K, Wang J, Ortinau L, Hu T, Shi X, Shi G, Shang G, Sun S, ... ... Li W, et al. Protein quality control through endoplasmic reticulum-associated degradation maintains haematopoietic stem cell identity and niche interactions. Nature Cell Biology. PMID 32958856 DOI: 10.1038/S41556-020-00581-X  0.302
2020 Li Y, Li B, Li W, Wang Y, Akgül S, Treisman DM, Heist KA, Pierce BR, Hoff B, Ho CY, Ferguson DO, Rehemtulla A, Zheng S, Ross BD, Li JZ, et al. Murine models of IDH-wild-type glioblastoma exhibit spatial segregation of tumor initiation and manifestation during evolution. Nature Communications. 11: 3669. PMID 32699356 DOI: 10.1038/s41467-020-17382-3  0.303
2020 Tovy A, Reyes JM, Gundry MC, Brunetti L, Lee-Six H, Petljak M, Park HJ, Guzman AG, Rosas C, Jeffries AR, Baple E, Mill J, Crosby AH, Sency V, Xin B, ... ... Li W, et al. Tissue-Biased Expansion of DNMT3A-Mutant Clones in a Mosaic Individual Is Associated with Conserved Epigenetic Erosion. Cell Stem Cell. PMID 32673568 DOI: 10.1016/J.Stem.2020.06.018  0.301
2020 Mao Y, Guo L, Luo Y, Tang Z, Li W, Dong W. Sexual reproduction potential implied by functional analysis of SPO11 in Phaeodactylum tricornutum. Gene. 144929. PMID 32622990 DOI: 10.1016/J.Gene.2020.144929  0.305
2020 Li W, Zhang N, Jin C, Long MD, Rajabi H, Yasumizu Y, Fushimi A, Yamashita N, Hagiwara M, Zheng R, Wang J, Kui L, Singh H, Kharbanda S, Hu Q, et al. MUC1-C drives stemness in progression of colitis to colorectal cancer. Jci Insight. PMID 32427590 DOI: 10.1172/Jci.Insight.137112  0.323
2020 Shu S, Wu HJ, Ge JY, Zeid R, Harris IS, Jovanović B, Murphy K, Wang B, Qiu X, Endress JE, Reyes J, Lim K, Font-Tello A, Syamala S, Xiao T, ... ... Li W, et al. Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer. Molecular Cell. PMID 32416067 DOI: 10.1016/J.Molcel.2020.04.027  0.325
2020 Li W, Buddhiraju S, Fan S. Thermodynamic limits for simultaneous energy harvesting from the hot sun and cold outer space. Light, Science & Applications. 9: 68. PMID 32351692 DOI: 10.1038/S41377-020-0296-X  0.113
2020 Liu X, Olszewski K, Zhang Y, Lim EW, Shi J, Zhang X, Zhang J, Lee H, Koppula P, Lei G, Zhuang L, You MJ, Fang B, Li W, Metallo CM, et al. Cystine transporter regulation of pentose phosphate pathway dependency and disulfide stress exposes a targetable metabolic vulnerability in cancer. Nature Cell Biology. PMID 32231310 DOI: 10.1038/S41556-020-0496-X  0.323
2020 Li W, Liu Z, Zhao B, Liu J. Multi-Responsive Fluorescence "Turn ON-OFF" Switch on PB@EuW10/SiO2 Composite for Dual Spectral Detection of N2H4 and H2O2. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 32223170 DOI: 10.1021/acs.langmuir.0c00078  0.127
2020 Zheng ZY, Anurag M, Lei JT, Cao J, Singh P, Peng J, Kennedy H, Nguyen NC, Chen Y, Lavere P, Li J, Du XH, Cakar B, Song W, Kim BJ, ... ... Li W, et al. Neurofibromin Is an Estrogen Receptor-α Transcriptional Co-repressor in Breast Cancer. Cancer Cell. PMID 32142667 DOI: 10.1016/J.Ccell.2020.02.003  0.311
2020 Buddhiraju S, Li W, Fan S. Photonic Refrigeration from Time-Modulated Thermal Emission. Physical Review Letters. 124: 077402. PMID 32142345 DOI: 10.1103/Physrevlett.124.077402  0.132
2020 Yasumizu Y, Rajabi H, Jin C, Hata T, Pitroda S, Long MD, Hagiwara M, Li W, Hu Q, Liu S, Yamashita N, Fushimi A, Kui L, Samur M, Yamamoto M, et al. MUC1-C regulates lineage plasticity driving progression to neuroendocrine prostate cancer. Nature Communications. 11: 338. PMID 31953400 DOI: 10.1038/S41467-019-14219-6  0.317
2019 Stewart JW, Vella JH, Li W, Fan S, Mikkelsen MH. Ultrafast pyroelectric photodetection with on-chip spectral filters. Nature Materials. PMID 31768011 DOI: 10.1038/S41563-019-0538-6  0.133
2019 Fei T, Li W, Peng J, Xiao T, Chen CH, Wu A, Huang J, Zang C, Liu XS, Brown M. Deciphering essential cistromes using genome-wide CRISPR screens. Proceedings of the National Academy of Sciences of the United States of America. PMID 31727847 DOI: 10.1073/Pnas.1908155116  0.602
2019 Hata T, Rajabi H, Takahashi H, Yasumizu Y, Li W, Jin C, Long MD, Hu Q, Liu S, Fushimi A, Yamashita N, Kui L, Hong D, Yamamoto M, Miyo M, et al. MUC1-C Activates The NuRD Complex To Drive Dedifferentiation of Triple-Negative Breast Cancer Cells. Cancer Research. PMID 31519689 DOI: 10.1158/0008-5472.Can-19-1034  0.314
2019 Rajabi H, Hata T, Li W, Long MD, Hu Q, Liu S, Raina D, Kui L, Yazumizu Y, Hong D, Samur M, Kufe D. MUC1-C represses the RASSF1A tumor suppressor in human carcinoma cells. Oncogene. PMID 31435022 DOI: 10.1038/S41388-019-0940-1  0.326
2019 Palaniappan M, Nguyen L, Grimm SL, Xi Y, Xia Z, Li W, Coarfa C. The genomic landscape of estrogen receptor α binding sites in mouse mammary gland. Plos One. 14: e0220311. PMID 31408468 DOI: 10.1371/Journal.Pone.0220311  0.347
2019 Hata T, Rajabi H, Yamamoto M, Jin C, Ahmad R, Zhang Y, Kui L, Li W, Yasumitzu Y, Hong D, Miyo M, Hiraki M, Maeda T, Suzuki Y, Takahashi H, et al. TARGETING MUC1-C INHIBITS TWIST1 SIGNALING IN TRIPLE-NEGATIVE BREAST CANCER. Molecular Cancer Therapeutics. PMID 31308076 DOI: 10.1158/1535-7163.Mct-19-0156  0.313
2019 Li Y, Peng YG, Han L, Miri MA, Li W, Xiao M, Zhu XF, Zhao J, Alù A, Fan S, Qiu CW. Anti-parity-time symmetry in diffusive systems. Science (New York, N.Y.). 364: 170-173. PMID 30975886 DOI: 10.1126/Science.Aaw6259  0.115
2019 Luo Y, Wang S, Liu X, Wen H, Li W, Yao X. Langerhans cells mediate the skin-induced tolerance to ovalbumin via Langerin in a murine model. Allergy. PMID 30964950 DOI: 10.1111/all.13813  0.144
2019 Weng T, Ko J, Masamha CP, Xia Z, Xiang Y, Chen NY, Molina JG, Collum S, Mertens TC, Luo F, Philip K, Davies J, Huang J, Wilson C, Thandavarayan RA, ... ... Li W, et al. Cleavage factor 25 deregulation contributes to pulmonary fibrosis through alternative polyadenylation. The Journal of Clinical Investigation. 130. PMID 30830875 DOI: 10.1172/Jci122106  0.311
2019 Li W, Xu X, Wen H, Wang Z, Ding C, Liu X, Gao Y, Su H, Zhang J, Han Y, Xia Y, Wang X, Gu H, Yao X. Inverse association between the skin and oral microbiota in atopic dermatitis. The Journal of Investigative Dermatology. PMID 30802424 DOI: 10.1016/j.jid.2019.02.009  0.136
2019 Cato L, de Tribolet-Hardy J, Lee I, Rottenberg JT, Coleman I, Melchers D, Houtman R, Xiao T, Li W, Uo T, Sun S, Kuznik NC, Göppert B, Ozgun F, van Royen ME, et al. ARv7 Represses Tumor-Suppressor Genes in Castration-Resistant Prostate Cancer. Cancer Cell. PMID 30773341 DOI: 10.1016/J.Ccell.2019.01.008  0.543
2019 Wang B, Wang M, Zhang W, Xiao T, Chen CH, Wu A, Wu F, Traugh N, Wang X, Li Z, Mei S, Cui Y, Shi S, Lipp JJ, Hinterndorfer M, ... Li W, et al. Integrative analysis of pooled CRISPR genetic screens using MAGeCKFlute. Nature Protocols. PMID 30710114 DOI: 10.1038/S41596-018-0113-7  0.552
2019 Chu Y, Elrod N, Wang C, Li L, Chen T, Routh A, Xia Z, Li W, Wagner EJ, Ji P. Nudt21 regulates the alternative polyadenylation of Pak1 and is predictive in the prognosis of glioblastoma patients. Oncogene. PMID 30705404 DOI: 10.1038/S41388-019-0714-9  0.367
2019 Wang WW, Angulo-Ibanez M, Lyu J, Kurra Y, Tong Z, Wu B, Zhang L, Sharma V, Zhou J, Lin H, Gao YQ, Li W, Chua KF, Liu WR. A Click Chemistry Approach Reveals the Chromatin-Dependent Histone H3K36 Deacylase Nature of SIRT7. Journal of the American Chemical Society. PMID 30653310 DOI: 10.1021/Jacs.8B12083  0.342
2018 Li L, Li L, Li W, Chen T, Bin Zou, Zhao L, Wang H, Wang X, Xu L, Liu X, Wang D, Li B, Mak TW, Du W, Yang X, et al. TAp73-induced phosphofructokinase-1 transcription promotes the Warburg effect and enhances cell proliferation. Nature Communications. 9: 4683. PMID 30409970 DOI: 10.1038/S41467-018-07127-8  0.313
2018 Mi W, Zhang Y, Lyu J, Wang X, Tong Q, Peng D, Xue Y, Tencer AH, Wen H, Li W, Kutateladze TG, Shi X. The ZZ-type zinc finger of ZZZ3 modulates the ATAC complex-mediated histone acetylation and gene activation. Nature Communications. 9: 3759. PMID 30217978 DOI: 10.1038/S41467-018-06247-5  0.311
2018 Zhang Y, Shi J, Liu X, Feng L, Gong Z, Koppula P, Sirohi K, Li X, Wei Y, Lee H, Zhuang L, Chen G, Xiao ZD, Hung MC, Chen J, ... Li W, et al. BAP1 links metabolic regulation of ferroptosis to tumour suppression. Nature Cell Biology. PMID 30202049 DOI: 10.1038/S41556-018-0178-0  0.346
2018 Zhang Y, Xue Y, Shi J, Ahn J, Mi W, Ali M, Wang X, Klein BJ, Wen H, Li W, Shi X, Kutateladze TG. The ZZ domain of p300 mediates specificity of the adjacent HAT domain for histone H3. Nature Structural & Molecular Biology. PMID 30150647 DOI: 10.1038/S41594-018-0114-9  0.306
2018 Hu Z, Xia B, Postnikoff SD, Shen ZJ, Tomoiaga AS, Harkness TA, Seol JH, Li W, Chen K, Tyler JK. Ssd1 and Gcn2 suppress global translation efficiency in replicatively aged yeast while their activation extends lifespan. Elife. 7. PMID 30117416 DOI: 10.7554/Elife.35551  0.326
2018 Chen J, Li HL, Li BB, Li W, Ma D, Li YH, Liu T. Serum- and glucocorticoid-inducible kinase 3 is a potential oncogene in nasopharyngeal carcinoma. Brazilian Journal of Otorhinolaryngology. PMID 30108027 DOI: 10.1016/j.bjorl.2018.05.012  0.319
2018 Su J, Huang YH, Cui X, Wang X, Zhang X, Lei Y, Xu J, Lin X, Chen K, Lv J, Goodell MA, Li W. Homeobox oncogene activation by pan-cancer DNA hypermethylation. Genome Biology. 19: 108. PMID 30097071 DOI: 10.1186/S13059-018-1492-3  0.318
2018 Feng X, Li L, Wagner EJ, Li W. TC3A: The Cancer 3' UTR Atlas. Nucleic Acids Research. 46: D1027-D1030. PMID 30053266 DOI: 10.1093/Nar/Gkx892  0.343
2018 Gu T, Lin X, Cullen SM, Luo M, Jeong M, Estecio M, Shen J, Hardikar S, Sun D, Su J, Rux D, Guzman A, Lee M, Qi LS, Chen JJ, ... ... Li W, et al. DNMT3A and TET1 cooperate to regulate promoter epigenetic landscapes in mouse embryonic stem cells. Genome Biology. 19: 88. PMID 30001199 DOI: 10.1186/S13059-018-1464-7  0.332
2018 Zhang Y, Yang L, Kucherlapati M, Chen F, Hadjipanayis A, Pantazi A, Bristow CA, Lee EA, Mahadeshwar HS, Tang J, Zhang J, Seth S, Lee S, Ren X, Song X, ... ... Li W, et al. A Pan-Cancer Compendium of Genes Deregulated by Somatic Genomic Rearrangement across More Than 1,400 Cases. Cell Reports. 24: 515-527. PMID 29996110 DOI: 10.1016/J.Celrep.2018.06.025  0.361
2018 Xiao T, Li W, Wang X, Xu H, Yang J, Wu Q, Huang Y, Geradts J, Jiang P, Fei T, Chi D, Zang C, Liao Q, Rennhack J, Andrechek E, et al. Estrogen-regulated feedback loop limits the efficacy of estrogen receptor-targeted breast cancer therapy. Proceedings of the National Academy of Sciences of the United States of America. PMID 29987050 DOI: 10.1073/Pnas.1722617115  0.667
2018 Hsu CC, Zhao D, Shi J, Peng D, Guan H, Li Y, Huang Y, Wen H, Li W, Li H, Shi X. Gas41 links histone acetylation to H2A.Z deposition and maintenance of embryonic stem cell identity. Cell Discovery. 4: 28. PMID 29900004 DOI: 10.1038/S41421-018-0027-0  0.302
2018 Chen CH, Xiao T, Xu H, Jiang P, Meyer CA, Li W, Brown M, Liu XS. Improved design and analysis of CRISPR knockout screens. Bioinformatics (Oxford, England). PMID 29868757 DOI: 10.1093/Bioinformatics/Bty450  0.463
2018 Dhar SS, Zhao D, Lin T, Gu B, Pal K, Wu SJ, Alam H, Lv J, Yun K, Gopalakrishnan V, Flores ER, Northcott PA, Rajaram V, Li W, Shilatifard A, et al. MLL4 Is Required to Maintain Broad H3K4me3 Peaks and Super-Enhancers at Tumor Suppressor Genes. Molecular Cell. PMID 29861161 DOI: 10.1016/J.Molcel.2018.04.028  0.339
2018 Park HJ, Ji P, Kim S, Xia Z, Rodriguez B, Li L, Su J, Chen K, Masamha CP, Baillat D, Fontes-Garfias CR, Shyu AB, Neilson JR, Wagner EJ, Li W. 3' UTR shortening represses tumor-suppressor genes in trans by disrupting ceRNA crosstalk. Nature Genetics. PMID 29785014 DOI: 10.1038/S41588-018-0118-8  0.339
2018 Jeong M, Park HJ, Celik H, Ostrander EL, Reyes JM, Guzman A, Rodriguez B, Lei Y, Lee Y, Ding L, Guryanova OA, Li W, Goodell MA, Challen GA. Loss of Dnmt3a Immortalizes Hematopoietic Stem Cells In Vivo. Cell Reports. 23: 1-10. PMID 29617651 DOI: 10.1016/J.Celrep.2018.03.025  0.315
2018 Park HJ, Kim S, Li W. Model-based analysis of competing-endogenous pathways (MACPath) in human cancers. Plos Computational Biology. 14: e1006074. PMID 29565967 DOI: 10.1371/Journal.Pcbi.1006074  0.367
2018 Xi Y, Shi J, Li W, Tanaka K, Allton KL, Richardson D, Li J, Franco HL, Nagari A, Malladi VS, Coletta LD, Simper MS, Keyomarsi K, Shen J, Bedford MT, ... ... Li W, et al. Histone modification profiling in breast cancer cell lines highlights commonalities and differences among subtypes. Bmc Genomics. 19: 150. PMID 29458327 DOI: 10.1186/S12864-018-4533-0  0.337
2018 Chen M, Lyu G, Han M, Nie H, Shen T, Chen W, Niu Y, Song Y, Li X, Li H, Chen X, Wang Z, Xia Z, Li W, Tian XL, et al. 3' UTR lengthening as a novel mechanism in regulating cellular senescence. Genome Research. PMID 29440281 DOI: 10.1101/Gr.224451.117  0.376
2018 Hsu CC, Shi J, Yuan C, Zhao D, Jiang S, Lyu J, Wang X, Li H, Wen H, Li W, Shi X. Recognition of histone acetylation by the GAS41 YEATS domain promotes H2A.Z deposition in non-small cell lung cancer. Genes & Development. 32: 58-69. PMID 29437725 DOI: 10.1101/Gad.303784.117  0.34
2018 Jeong M, Huang X, Zhang X, Su J, Shamim MS, Bochkov ID, Reyes JM, Jung H, Heikamp EB, Aiden AP, Li W, Aiden EL, Goodell MA. Large DNA Methylation Canyons Anchor Chromatin Loops Maintaining Hematopoietic Stem Cell Identity Blood. 132: 534-534. DOI: 10.1182/Blood-2018-99-119485  0.314
2018 Zhu G, Luo H, Chen S, Lai Q, Guo Y, Guryanova OA, Qiu Y, Yang F, Li W, Nimer SD, Huang S, Xu M. Hoxblinc Is Aberrantly Expressed in Acute Myeloid Leukemia and Functions As a Potent Oncogenic Long Non-Coding RNA in Leukemogenesis Blood. 132: 886-886. DOI: 10.1182/Blood-2018-99-112232  0.317
2018 Luo H, Zhu G, Zha J, Yan B, Guo Y, Xu J, Lai Q, Xu B, Yang F, Li W, Qiu Y, Xu M, Huang S. Activation of Hottip lncrna Perturbs HSC Function Leading to AML like Disease in Mice Blood. 132: 3877-3877. DOI: 10.1182/Blood-2018-99-110218  0.343
2017 Franco HL, Nagari A, Malladi V, Li W, Xi Y, Richardson D, Allton KL, Tanaka K, Li J, Murakami S, Keyomarsi K, Bedford MT, Shi X, Li W, Barton MC, et al. Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis. Genome Research. PMID 29273624 DOI: 10.1101/Gr.226019.117  0.35
2017 Mi W, Guan H, Lyu J, Zhao D, Xi Y, Jiang S, Andrews FH, Wang X, Gagea M, Wen H, Tora L, Dent SYR, Kutateladze TG, Li W, Li H, et al. YEATS2 links histone acetylation to tumorigenesis of non-small cell lung cancer. Nature Communications. 8: 1088. PMID 29057918 DOI: 10.1038/S41467-017-01173-4  0.357
2017 Tencer AH, Cox KL, Di L, Bridgers JB, Lyu J, Wang X, Sims JK, Weaver TM, Allen HF, Zhang Y, Gatchalian J, Darcy MA, Gibson MD, Ikebe J, Li W, et al. Covalent Modifications of Histone H3K9 Promote Binding of CHD3. Cell Reports. 21: 455-466. PMID 29020631 DOI: 10.1016/J.Celrep.2017.09.054  0.328
2017 Huang YH, Su J, Lei Y, Brunetti L, Gundry MC, Zhang X, Jeong M, Li W, Goodell MA. DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3A. Genome Biology. 18: 176. PMID 28923089 DOI: 10.1186/S13059-017-1306-Z  0.301
2017 Cao Q, Ma J, Chen CH, Xu H, Chen Z, Li W, Liu XS. CRISPR-FOCUS: A web server for designing focused CRISPR screening experiments. Plos One. 12: e0184281. PMID 28873439 DOI: 10.1371/Journal.Pone.0184281  0.641
2017 Lin X, Su J, Chen K, Rodriguez B, Li W. Sparse conserved under-methylated CpGs are associated with high-order chromatin structure. Genome Biology. 18: 163. PMID 28859663 DOI: 10.1186/S13059-017-1296-X  0.321
2017 Jiang Z, Yang J, Dai A, Wang Y, Li W, Xie Z. Ribosome profiling reveals translational regulation of mammalian cells in response to hypoxic stress. Bmc Genomics. 18: 638. PMID 28826393 DOI: 10.1186/S12864-017-3996-8  0.331
2017 Gates LA, Shi J, Rohira AD, Feng Q, Zhu B, Bedford MT, Sagum CA, Jung SY, Qin J, Tsai MJ, Tsai SY, Li W, Foulds CE, O'Malley BW. Acetylation on histone H3 lysine 9 mediates a switch from transcription initiation to elongation. The Journal of Biological Chemistry. 292: 14456-14472. PMID 28717009 DOI: 10.1074/Jbc.M117.802074  0.336
2017 Lei Y, Zhang X, Su J, Jeong M, Gundry MC, Huang YH, Zhou Y, Li W, Goodell MA. Targeted DNA methylation in vivo using an engineered dCas9-MQ1 fusion protein. Nature Communications. 8: 16026. PMID 28695892 DOI: 10.1038/Ncomms16026  0.306
2017 Koppula P, Zhang Y, Shi J, Li W, Gan B. The glutamate/cystine antiporter SLC7A11/xCT enhances cancer cell dependency on glucose by exporting glutamate. The Journal of Biological Chemistry. PMID 28630042 DOI: 10.1074/Jbc.M117.798405  0.318
2017 Fei T, Chen Y, Xiao T, Li W, Cato L, Zhang P, Cotter MB, Bowden M, Lis RT, Zhao SG, Wu Q, Feng FY, Loda M, He HH, Liu XS, et al. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. Proceedings of the National Academy of Sciences of the United States of America. PMID 28611215 DOI: 10.1073/Pnas.1617467114  0.612
2017 Oegema R, Baillat D, Schot R, van Unen LM, Brooks A, Kia SK, Hoogeboom AJM, Xia Z, Li W, Cesaroni M, Lequin MH, van Slegtenhorst M, Dobyns WB, de Coo IFM, Verheijen FW, et al. Human mutations in integrator complex subunits link transcriptome integrity to brain development. Plos Genetics. 13: e1006809. PMID 28542170 DOI: 10.1371/Journal.Pgen.1006809  0.323
2017 Li MJ, Zhang J, Liang Q, Xuan C, Wu J, Jiang P, Li W, Zhu Y, Wang P, Fernandez D, Shen Y, Chen Y, Kocher JA, Yu Y, Sham PC, et al. Exploring genetic associations with ceRNA regulation in the human genome. Nucleic Acids Research. PMID 28472449 DOI: 10.1093/Nar/Gkx331  0.622
2017 Routh A, Ji P, Jaworski E, Xia Z, Li W, Wagner EJ. Poly(A)-ClickSeq: click-chemistry for next-generation 3΄-end sequencing without RNA enrichment or fragmentation. Nucleic Acids Research. PMID 28449108 DOI: 10.1093/Nar/Gkx286  0.315
2017 Dai F, Lee H, Zhang Y, Zhuang L, Yao H, Xi Y, Xiao ZD, You MJ, Li W, Su X, Gan B. BAP1 inhibits the ER stress gene regulatory network and modulates metabolic stress response. Proceedings of the National Academy of Sciences of the United States of America. PMID 28275095 DOI: 10.1073/Pnas.1619588114  0.331
2017 Wan L, Wen H, Li Y, Lyu J, Xi Y, Hoshii T, Joseph JK, Wang X, Loh YE, Erb MA, Souza AL, Bradner JE, Shen L, Li W, Li H, et al. ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia. Nature. PMID 28241141 DOI: 10.1038/Nature21687  0.373
2017 Gao W, Li W, Xiao T, Liu XS, Kaelin WG. Inactivation of the PBRM1 tumor suppressor gene amplifies the HIF-response in VHL-/- clear cell renal carcinoma. Proceedings of the National Academy of Sciences of the United States of America. PMID 28082722 DOI: 10.1073/Pnas.1619726114  0.539
2017 Xiao T, Li W, Wang X, Xu H, Wu Q, Jiang P, Yang J, Fei T, Zang C, Liao Q, Rennhack J, Andrechek E, Li N, Jeselsohn R, Liu SX, et al. Abstract PR06: CRISPR screens identified drivers of endocrine resistance and synthetic lethal vulnerabilities in breast cancer Molecular Cancer Therapeutics. 16. DOI: 10.1158/1538-8514.Synthleth-Pr06  0.625
2016 Song J, Zang J, Tang H, Li W, Wang Z, Zou S, Jia X. [Relative validity of food frequency questionnaire for estimating dietary nutrients intake]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 45: 743-748. PMID 29903124  0.309
2016 Jain AK, Xi Y, McCarthy R, Allton K, Akdemir KC, Patel LR, Aronow B, Lin C, Li W, Yang L, Barton MC. LncPRESS1 Is a p53-Regulated LncRNA that Safeguards Pluripotency by Disrupting SIRT6-Mediated De-acetylation of Histone H3K56. Molecular Cell. 64: 967-981. PMID 27912097 DOI: 10.1016/J.Molcel.2016.10.039  0.356
2016 Zhu S, Li W, Liu J, Chen CH, Liao Q, Xu P, Xu H, Xiao T, Cao Z, Peng J, Yuan P, Brown M, Liu XS, Wei W. Genome-scale deletion screening of human long non-coding RNAs using a paired-guide RNA CRISPR-Cas9 library. Nature Biotechnology. PMID 27798563 DOI: 10.1038/Nbt.3715  0.628
2016 Mamuya FA, Cano-Peñalver JL, Li WU, Rodriguez-Puyol D, Rodríguez-Puyol M, Brown D, de Frutos S, Lu HJ. ILK and Cytoskeletal Architecture: An Important Determinant of AQP2 Recycling and Subsequent Entry into the Exocytotic Pathway. American Journal of Physiology. Renal Physiology. ajprenal.00336.2016. PMID 27760768 DOI: 10.1152/Ajprenal.00336.2016  0.315
2016 Giudice J, Xia Z, Li W, Cooper TA. Neonatal cardiac dysfunction and transcriptome changes caused by the absence of Celf1. Scientific Reports. 6: 35550. PMID 27759042 DOI: 10.1038/Srep35550  0.336
2016 McNair C, Urbanucci A, Comstock CE, Augello MA, Goodwin JF, Launchbury R, Zhao SG, Schiewer MJ, Ertel A, Karnes J, Davicioni E, Wang L, Wang Q, Mills IG, Feng FY, ... Li W, et al. Cell cycle-coupled expansion of AR activity promotes cancer progression. Oncogene. PMID 27669432 DOI: 10.1038/Onc.2016.334  0.304
2016 Li N, Li Y, Lv J, Zheng X, Wen H, Shen H, Zhu G, Chen TY, Dhar SS, Kan PY, Wang Z, Shiekhattar R, Shi X, Lan F, Chen K, ... Li W, et al. ZMYND8 Reads the Dual Histone Mark H3K4me1-H3K14ac to Antagonize the Expression of Metastasis-Linked Genes. Molecular Cell. PMID 27477906 DOI: 10.1016/J.Molcel.2016.06.035  0.343
2016 Zhang X, Su J, Jeong M, Ko M, Huang Y, Park HJ, Guzman A, Lei Y, Huang YH, Rao A, Li W, Goodell MA. DNMT3A and TET2 compete and cooperate to repress lineage-specific transcription factors in hematopoietic stem cells. Nature Genetics. PMID 27428748 DOI: 10.1038/Ng.3610  0.344
2016 Ma J, Köster J, Qin Q, Hu S, Li W, Chen C, Cao Q, Wang J, Mei S, Liu Q, Xu H, Liu XS. CRISPR-DO for genome-wide CRISPR design and optimization. Bioinformatics (Oxford, England). PMID 27402906 DOI: 10.1093/Bioinformatics/Btw476  0.628
2016 Li X, Wang W, Xi Y, Gao M, Tran M, Aziz KE, Qin J, Li W, Chen J. FOXR2 Interacts with MYC to Promote Its Transcriptional Activities and Tumorigenesis. Cell Reports. PMID 27346356 DOI: 10.1016/J.Celrep.2016.06.004  0.366
2016 Rau RE, Rodriguez B, Luo M, Jeong M, Rosen A, Rogers JH, Campbell CT, Daigle SR, Deng L, Song Y, Sweet S, Chevassut T, Andreeff M, Kornblau SM, Li W, et al. DOT1L as a therapeutic target for the treatment of DNMT3A-mutant acute myeloid leukemia. Blood. PMID 27335278 DOI: 10.1182/Blood-2015-11-684225  0.352
2016 Yang L, Rodriguez B, Mayle A, Park HJ, Lin X, Luo M, Jeong M, Curry CV, Kim SB, Ruau D, Zhang X, Zhou T, Zhou M, Rebel VI, Challen GA, ... ... Li W, et al. DNMT3A Loss Drives Enhancer Hypomethylation in FLT3-ITD-Associated Leukemias. Cancer Cell. 29: 922-934. PMID 27300438 DOI: 10.1016/J.Ccell.2016.05.003  0.334
2016 Masamha CP, Xia Z, Peart N, Collum S, Li W, Wagner EJ, Shyu AB. CFIm25 regulates glutaminase alternative terminal exon definition to modulate miR-23 function. Rna (New York, N.Y.). PMID 27095025 DOI: 10.1261/Rna.055939.116  0.317
2016 Tasselli L, Xi Y, Zheng W, Tennen RI, Odrowaz Z, Simeoni F, Li W, Chua KF. SIRT6 deacetylates H3K18ac at pericentric chromatin to prevent mitotic errors and cellular senescence. Nature Structural & Molecular Biology. PMID 27043296 DOI: 10.1038/Nsmb.3202  0.357
2016 Zhang X, Peng D, Xi Y, Yuan C, Sagum CA, Klein BJ, Tanaka K, Wen H, Kutateladze TG, Li W, Bedford MT, Shi X. G9a-mediated methylation of ERα links the PHF20/MOF histone acetyltransferase complex to hormonal gene expression. Nature Communications. 7: 10810. PMID 26960573 DOI: 10.1038/Ncomms10810  0.326
2016 Dhar SS, Lee SH, Chen K, Zhu G, Oh W, Allton K, Gafni O, Kim YZ, Tomoiga AS, Barton MC, Hanna JH, Wang Z, Li W, Lee MG. An essential role for UTX in resolution and activation of bivalent promoters. Nucleic Acids Research. PMID 26762983 DOI: 10.1093/Nar/Gkv1516  0.332
2016 Franco HL, Nagari A, Xi Y, Li W, Richardson D, Tanaka K, Li J, Barton MC, Shi X, Keyomarsi K, Bedford MT, Li W, Dent SYR, Kraus WL. Abstract PR06: Analysis of enhancer transcription reveals novel gene regulatory networks in breast cancer Cancer Research. 76. DOI: 10.1158/1538-7445.Chromepi15-Pr06  0.348
2015 Chen K, Hu Z, Xia Z, Zhao D, Li W, Tyler JK. The overlooked fact: fundamental need of spike-in controls for virtually all genome-wide analyses. Molecular and Cellular Biology. PMID 26711261 DOI: 10.1128/Mcb.00970-14  0.322
2015 Li W, Köster J, Xu H, Chen CH, Xiao T, Liu JS, Brown M, Liu XS. Quality control, modeling, and visualization of CRISPR screens with MAGeCK-VISPR. Genome Biology. 16: 281. PMID 26673418 DOI: 10.1186/S13059-015-0843-6  0.441
2015 An J, González-Avalos E, Chawla A, Jeong M, López-Moyado IF, Li W, Goodell MA, Chavez L, Ko M, Rao A. Acute loss of TET function results in aggressive myeloid cancer in mice. Nature Communications. 6: 10071. PMID 26607761 DOI: 10.1038/Ncomms10071  0.345
2015 Jiang P, Wang H, Li W, Zang C, Li B, Wong YJ, Meyer C, Liu JS, Aster JC, Liu XS. Network analysis of gene essentiality in functional genomics experiments. Genome Biology. 16: 239. PMID 26518695 DOI: 10.1186/S13059-015-0808-9  0.683
2015 Zoghbi HY, Gennarino VA, Alcott CE, Chen CA, Chaudhury A, Gillentine MA, Rosenfeld JA, Parikh S, Wheless JW, Roeder ER, Horovitz DD, Roney EK, Smith JL, Cheung SW, Li W, et al. NUDT21-spanning CNVs lead to neuropsychiatric disease and altered MeCP2 abundance via alternative polyadenylation. Elife. 4. PMID 26312503 DOI: 10.7554/Elife.10782  0.322
2015 Chen K, Chen Z, Wu D, Zhang L, Lin X, Su J, Rodriguez B, Xi Y, Xia Z, Chen X, Shi X, Wang Q, Li W. Broad H3K4me3 is associated with increased transcription elongation and enhancer activity at tumor-suppressor genes. Nature Genetics. PMID 26301496 DOI: 10.1038/Ng.3385  0.352
2015 Hirsch CL, Akdemir ZC, Wang L, Jayakumaran G, Trcka D, Weiss A, Hernandez JJ, Pan Q, Han H, Xu X, Xia Z, Salinger AP, Wilson M, Vizeacoumar F, Datti A, ... Li W, et al. Corrigendum: Myc and SAGA rewire an alternative splicing network during early somatic cell reprogramming. Genes & Development. 29: 1341. PMID 26109054 DOI: 10.1101/Gad.266601.115  0.317
2015 Xu H, Xiao T, Chen CH, Li W, Meyer CA, Wu Q, Wu D, Cong L, Zhang F, Liu JS, Brown M, Liu XS. Sequence determinants of improved CRISPR sgRNA design. Genome Research. PMID 26063738 DOI: 10.1101/Gr.191452.115  0.633
2015 Morikawa Y, Zhang M, Heallen T, Leach J, Tao G, Xiao Y, Bai Y, Li W, Willerson JT, Martin JF. Actin cytoskeletal remodeling with protrusion formation is essential for heart regeneration in Hippo-deficient mice. Science Signaling. 8: ra41. PMID 25943351 DOI: 10.1126/Scisignal.2005781  0.34
2015 He H, Li W, Liyanarachchi S, Srinivas M, Wang Y, Akagi K, Wang Y, Wu D, Wang Q, Jin V, Symer DE, Shen R, Phay J, Nagy R, de la Chapelle A. Multiple functional variants in long-range enhancer elements contribute to the risk of SNP rs965513 in thyroid cancer. Proceedings of the National Academy of Sciences of the United States of America. 112: 6128-33. PMID 25918370 DOI: 10.1073/Pnas.1506255112  0.305
2015 Hirsch CL, Coban Akdemir Z, Wang L, Jayakumaran G, Trcka D, Weiss A, Hernandez JJ, Pan Q, Han H, Xu X, Xia Z, Salinger AP, Wilson M, Vizeacoumar F, Datti A, ... Li W, et al. Myc and SAGA rewire an alternative splicing network during early somatic cell reprogramming. Genes & Development. 29: 803-16. PMID 25877919 DOI: 10.1101/Gad.255109.114  0.336
2015 Chen L, Chen K, Lavery LA, Baker SA, Shaw CA, Li W, Zoghbi HY. MeCP2 binds to non-CG methylated DNA as neurons mature, influencing transcription and the timing of onset for Rett syndrome. Proceedings of the National Academy of Sciences of the United States of America. 112: 5509-14. PMID 25870282 DOI: 10.1073/Pnas.1505909112  0.342
2015 Luo M, Jeong M, Sun D, Park HJ, Rodriguez BA, Xia Z, Yang L, Zhang X, Sheng K, Darlington GJ, Li W, Goodell MA. Long non-coding RNAs control hematopoietic stem cell function. Cell Stem Cell. 16: 426-38. PMID 25772072 DOI: 10.1016/J.Stem.2015.02.002  0.361
2015 Poungvarin N, Chang B, Imamura M, Chen J, Moolsuwan K, Sae-Lee C, Li W, Chan L. Genome-Wide Analysis of ChREBP Binding Sites on Male Mouse Liver and White Adipose Chromatin. Endocrinology. 156: 1982-94. PMID 25751637 DOI: 10.1210/En.2014-1666  0.327
2015 Yang Y, Hadjikyriacou A, Xia Z, Gayatri S, Kim D, Zurita-Lopez C, Kelly R, Guo A, Li W, Clarke SG, Bedford MT. PRMT9 is a type II methyltransferase that methylates the splicing factor SAP145. Nature Communications. 6: 6428. PMID 25737013 DOI: 10.1038/Ncomms7428  0.318
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Li W, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.342
2015 Li X, Wang W, Wang J, Malovannaya A, Xi Y, Li W, Guerra R, Hawke DH, Qin J, Chen J. Proteomic analyses reveal distinct chromatin-associated and soluble transcription factor complexes. Molecular Systems Biology. 11: 775. PMID 25609649 DOI: 10.15252/Msb.20145504  0.327
2015 Chen Z, Lan X, Thomas-Ahner JM, Wu D, Liu X, Ye Z, Wang L, Sunkel B, Grenade C, Chen J, Zynger DL, Yan PS, Huang J, Nephew KP, Huang TH, ... ... Li W, et al. Agonist and antagonist switch DNA motifs recognized by human androgen receptor in prostate cancer. The Embo Journal. 34: 502-16. PMID 25535248 DOI: 10.15252/Embj.201490306  0.326
2015 Mayle A, Yang L, Rodriguez B, Zhou T, Chang E, Curry CV, Challen GA, Li W, Wheeler D, Rebel VI, Goodell MA. Dnmt3a loss predisposes murine hematopoietic stem cells to malignant transformation. Blood. 125: 629-38. PMID 25416277 DOI: 10.1182/Blood-2014-08-594648  0.32
2015 He H, Li W, Liyanarachchi S, Jendrzejewski J, Srinivas M, Davuluri RV, Nagy R, de la Chapelle A. Genetic predisposition to papillary thyroid carcinoma: involvement of FOXE1, TSHR, and a novel lincRNA gene, PTCSC2. The Journal of Clinical Endocrinology and Metabolism. 100: E164-72. PMID 25303483 DOI: 10.1210/Jc.2014-2147  0.302
2015 Sowalsky AG, Xia Z, Wang L, Zhao H, Chen S, Bubley GJ, Balk SP, Li W. Whole transcriptome sequencing reveals extensive unspliced mRNA in metastatic castration-resistant prostate cancer. Molecular Cancer Research : McR. 13: 98-106. PMID 25189356 DOI: 10.1158/1541-7786.Mcr-14-0273  0.323
2014 Hu Z, Chen K, Li W, Tyler JK. Transcriptional and genomic mayhem due to aging-induced nucleosome loss in budding yeast. Microbial Cell (Graz, Austria). 1: 133-136. PMID 28357234 DOI: 10.15698/Mic2014.04.139  0.336
2014 Li W, Xu H, Xiao T, Cong L, Love MI, Zhang F, Irizarry RA, Liu JS, Brown M, Liu XS. MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biology. 15: 554. PMID 25476604 DOI: 10.1186/S13059-014-0554-4  0.644
2014 Li Y, Wen H, Xi Y, Tanaka K, Wang H, Peng D, Ren Y, Jin Q, Dent SY, Li W, Li H, Shi X. AF9 YEATS domain links histone acetylation to DOT1L-mediated H3K79 methylation. Cell. 159: 558-71. PMID 25417107 DOI: 10.1016/J.Cell.2014.09.049  0.324
2014 Xia Z, Donehower LA, Cooper TA, Neilson JR, Wheeler DA, Wagner EJ, Li W. Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. Nature Communications. 5: 5274. PMID 25409906 DOI: 10.1038/Ncomms6274  0.348
2014 Wang L, Chen J, Wang C, Uusküla-Reimand L, Chen K, Medina-Rivera A, Young EJ, Zimmermann MT, Yan H, Sun Z, Zhang Y, Wu ST, Huang H, Wilson MD, Kocher JP, ... Li W, et al. MACE: model based analysis of ChIP-exo. Nucleic Acids Research. 42: e156. PMID 25249628 DOI: 10.1093/Nar/Gku846  0.351
2014 Challen GA, Sun D, Mayle A, Jeong M, Luo M, Rodriguez B, Mallaney C, Celik H, Yang L, Xia Z, Cullen S, Berg J, Zheng Y, Darlington GJ, Li W, et al. Dnmt3a and Dnmt3b have overlapping and distinct functions in hematopoietic stem cells. Cell Stem Cell. 15: 350-64. PMID 25130491 DOI: 10.1016/J.Stem.2014.06.018  0.315
2014 Zheng X, Zhao Q, Wu HJ, Li W, Wang H, Meyer CA, Qin QA, Xu H, Zang C, Jiang P, Li F, Hou Y, He J, Wang J, Wang J, et al. MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes. Genome Biology. 15: 419. PMID 25103624 DOI: 10.1186/S13059-014-0419-X  0.668
2014 Singh RK, Xia Z, Bland CS, Kalsotra A, Scavuzzo MA, Curk T, Ule J, Li W, Cooper TA. Rbfox2-coordinated alternative splicing of Mef2d and Rock2 controls myoblast fusion during myogenesis. Molecular Cell. 55: 592-603. PMID 25087874 DOI: 10.1016/J.Molcel.2014.06.035  0.334
2014 Blackmore JK, Karmakar S, Gu G, Chaubal V, Wang L, Li W, Smith CL. The SMRT coregulator enhances growth of estrogen receptor-α-positive breast cancer cells by promotion of cell cycle progression and inhibition of apoptosis. Endocrinology. 155: 3251-61. PMID 24971610 DOI: 10.1210/En.2014-1002  0.339
2014 Masamha CP, Xia Z, Yang J, Albrecht TR, Li M, Shyu AB, Li W, Wagner EJ. CFIm25 links alternative polyadenylation to glioblastoma tumour suppression. Nature. 510: 412-6. PMID 24814343 DOI: 10.1038/Nature13261  0.366
2014 Sun D, Luo M, Jeong M, Rodriguez B, Xia Z, Hannah R, Wang H, Le T, Faull KF, Chen R, Gu H, Bock C, Meissner A, Göttgens B, Darlington GJ, ... Li W, et al. Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal. Cell Stem Cell. 14: 673-88. PMID 24792119 DOI: 10.1016/J.Stem.2014.03.002  0.335
2014 Giudice J, Xia Z, Wang ET, Scavuzzo MA, Ward AJ, Kalsotra A, Wang W, Wehrens XH, Burge CB, Li W, Cooper TA. Alternative splicing regulates vesicular trafficking genes in cardiomyocytes during postnatal heart development. Nature Communications. 5: 3603. PMID 24752171 DOI: 10.1038/Ncomms4603  0.335
2014 Pathiraja TN, Nayak SR, Xi Y, Jiang S, Garee JP, Edwards DP, Lee AV, Chen J, Shea MJ, Santen RJ, Gannon F, Kangaspeska S, Jelinek J, Issa JP, Richer JK, ... ... Li W, et al. Epigenetic reprogramming of HOXC10 in endocrine-resistant breast cancer. Science Translational Medicine. 6: 229ra41. PMID 24670685 DOI: 10.1126/Scitranslmed.3008326  0.344
2014 Wen H, Li Y, Xi Y, Jiang S, Stratton S, Peng D, Tanaka K, Ren Y, Xia Z, Wu J, Li B, Barton MC, Li W, Li H, Shi X. ZMYND11 links histone H3.3K36me3 to transcription elongation and tumour suppression. Nature. 508: 263-8. PMID 24590075 DOI: 10.1038/Nature13045  0.352
2014 Sun D, Xi Y, Rodriguez B, Park HJ, Tong P, Meong M, Goodell MA, Li W. MOABS: model based analysis of bisulfite sequencing data. Genome Biology. 15: R38. PMID 24565500 DOI: 10.1186/Gb-2014-15-2-R38  0.321
2014 Hu Z, Chen K, Xia Z, Chavez M, Pal S, Seol JH, Chen CC, Li W, Tyler JK. Nucleosome loss leads to global transcriptional up-regulation and genomic instability during yeast aging. Genes & Development. 28: 396-408. PMID 24532716 DOI: 10.1101/Gad.233221.113  0.331
2014 Adikesavan AK, Karmakar S, Pardo P, Wang L, Liu S, Li W, Smith CL. Activation of p53 transcriptional activity by SMRT: a histone deacetylase 3-independent function of a transcriptional corepressor. Molecular and Cellular Biology. 34: 1246-61. PMID 24449765 DOI: 10.1128/Mcb.01216-13  0.339
2014 Klein BJ, Piao L, Xi Y, Rincon-Arano H, Rothbart SB, Peng D, Wen H, Larson C, Zhang X, Zheng X, Cortazar MA, Peña PV, Mangan A, Bentley DL, Strahl BD, ... ... Li W, et al. The histone-H3K4-specific demethylase KDM5B binds to its substrate and product through distinct PHD fingers. Cell Reports. 6: 325-35. PMID 24412361 DOI: 10.1016/J.Celrep.2013.12.021  0.362
2014 Jeong M, Sun D, Luo M, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim SB, Yang L, Ko M, Chen R, Göttgens B, ... ... Li W, et al. Large conserved domains of low DNA methylation maintained by Dnmt3a. Nature Genetics. 46: 17-23. PMID 24270360 DOI: 10.1038/Ng.2836  0.345
2014 Montoliu L, Grønskov K, Wei AH, Martínez-García M, Fernández A, Arveiler B, Morice-Picard F, Riazuddin S, Suzuki T, Ahmed ZM, Rosenberg T, Li W. Increasing the complexity: new genes and new types of albinism. Pigment Cell & Melanoma Research. 27: 11-8. PMID 24066960 DOI: 10.1111/Pcmr.12167  0.318
2014 Zhang X, Jeong M, Su J, Ko MG, Huang Y, Park HJ, Rao A, Li W, Goodell MA. Dnmt3a and Tet2 interact to Repress differentiation lineage-specific transcriptional factors in Hematopoietic Stem Cells By the Regulation of Epigenome Blood. 124: 242-242. DOI: 10.1182/Blood.V124.21.242.242  0.314
2014 Akdemir KC, Jain AK, Allton K, Aronow B, Xu X, Cooney AJ, Li W, Barton MC. Genome-wide profiling reveals stimulus-specific functions of p53 during differentiation and DNA damage of human embryonic stem cells Nucleic Acids Research. 42: 205-223. DOI: 10.1093/Nar/Gkt866  0.317
2013 Lin X, Sun D, Rodriguez B, Zhao Q, Sun H, Zhang Y, Li W. BSeQC: quality control of bisulfite sequencing experiments. Bioinformatics (Oxford, England). 29: 3227-9. PMID 24064417 DOI: 10.1093/Bioinformatics/Btt548  0.317
2013 Kosters A, Sun D, Wu H, Tian F, Felix JC, Li W, Karpen SJ. Sexually dimorphic genome-wide binding of retinoid X receptor alpha (RXRα) determines male-female differences in the expression of hepatic lipid processing genes in mice. Plos One. 8: e71538. PMID 23977068 DOI: 10.1371/Journal.Pone.0071538  0.314
2013 Rijnkels M, Freeman-Zadrowski C, Hernandez J, Potluri V, Wang L, Li W, Lemay DG. Epigenetic modifications unlock the milk protein gene loci during mouse mammary gland development and differentiation. Plos One. 8: e53270. PMID 23301053 DOI: 10.1371/Journal.Pone.0053270  0.308
2013 Chen K, Xi Y, Pan X, Li Z, Kaestner K, Tyler J, Dent S, He X, Li W. DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing. Genome Research. 23: 341-51. PMID 23193179 DOI: 10.1101/Gr.142067.112  0.311
2013 Chen K, Wilson MA, Hirsch C, Watson A, Liang S, Lu Y, Li W, Dent SY. Stabilization of the promoter nucleosomes in nucleosome-free regions by the yeast Cyc8-Tup1 corepressor. Genome Research. 23: 312-22. PMID 23124522 DOI: 10.1101/Gr.141952.112  0.335
2013 Yang L, Rodriguez B, Luo M, Jeong M, Ruau D, Curry CV, Zhang X, Challen GA, Rau RE, Gottgens B, Li W, Goodell MA. Dnmt3a-Deletion Accelerates FLT3-ITD Malignancies In Mice By Hypomethylation Of Enhancer Sites and Activating Stem Cell Programs; Implications For Therapy Blood. 122: 595-595. DOI: 10.1182/Blood.V122.21.595.595  0.301
2013 Luo M, Jeong M, Sun D, Park H, Yang L, Wang H, Chen R, Darlington G, Li W, Goodell MA. Long Non-Coding RNAs Control Hematopoietic Stem Cells (HSC) Function Blood. 122: 48-48. DOI: 10.1182/Blood.V122.21.48.48  0.342
2013 Jeong M, Sun D, Luo M, Huang Y, Ko M, Chavez L, Challen GA, Rodriguez B, Zhang X, Yang L, Wang H, Chen R, Hannah R, Kim S, Lee J, ... ... Li W, et al. Large Conserved Domains Of Low DNA Methylation Maintained By 5-Hydroxymethycytosine and Dnmt3a Blood. 122: 2406-2406. DOI: 10.1182/Blood.V122.21.2406.2406  0.347
2013 Jain AK, Akdemir KC, Allton K, Aronow B, Xu X, Cooney AJ, Li W, Barton MC. Abstract PR01: Genome wide profiling reveals stimulus-specific functions of p53 in human embryonic stem cells Cancer Research. 73. DOI: 10.1158/1538-7445.Fbcr13-Pr01  0.324
2012 Huang Z, Srinivasan S, Zhang J, Chen K, Li Y, Li W, Quiocho FA, Pan X. Discovering thiamine transporters as targets of chloroquine using a novel functional genomics strategy. Plos Genetics. 8: e1003083. PMID 23209439 DOI: 10.1371/Journal.Pgen.1003083  0.319
2012 Barber MF, Michishita-Kioi E, Xi Y, Tasselli L, Kioi M, Moqtaderi Z, Tennen RI, Paredes S, Young NL, Chen K, Struhl K, Garcia BA, Gozani O, Li W, Chua KF. SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation. Nature. 487: 114-8. PMID 22722849 DOI: 10.1038/Nature11043  0.343
2012 Qin B, Zhou M, Ge Y, Taing L, Liu T, Wang Q, Wang S, Chen J, Shen L, Duan X, Hu S, Li W, Long H, Zhang Y, Liu XS. CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human. Bioinformatics (Oxford, England). 28: 1411-2. PMID 22495751 DOI: 10.1093/Bioinformatics/Bts157  0.593
2012 Xiao R, Sun D, Ayers S, Xi Y, Li W, Baxter JD, Moore DD. Research resource: The estrogen receptor α cistrome defined by damIP Molecular Endocrinology. 26: 349-357. PMID 22207717 DOI: 10.1210/Me.2011-1080  0.339
2012 Jeong M, Luo M, Sun D, Darlington G, Hannah R, Gottgens B, Wang H, Chen R, Li W, Goodell MA. HSC Aging Epigenome: Widespread Alterations in DNA Methylation and Transcription. Blood. 120: 2329-2329. DOI: 10.1182/Blood.V120.21.2329.2329  0.338
2012 Luo M, Jeong M, Sun D, Wang H, Chen R, Li W, Darlington G, Goodell MA. Histone Alterations Are Associated with Hematopoietic Stem Cell (HSC) Differentiation and Aging Blood. 120: 1188-1188. DOI: 10.1182/Blood.V120.21.1188.1188  0.329
2011 Kuo AJ, Cheung P, Chen K, Zee BM, Kioi M, Lauring J, Xi Y, Park BH, Shi X, Garcia BA, Li W, Gozani O. NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming. Molecular Cell. 44: 609-20. PMID 22099308 DOI: 10.1016/J.Molcel.2011.08.042  0.316
2011 Klisch TJ, Xi Y, Flora A, Wang L, Li W, Zoghbi HY. In vivo Atoh1 targetome reveals how a proneural transcription factor regulates cerebellar development. Proceedings of the National Academy of Sciences of the United States of America. 108: 3288-93. PMID 21300888 DOI: 10.1073/Pnas.1100230108  0.304
2011 Chen Y, Meyer CA, Liu T, Li W, Liu JS, Liu XS. MM-ChIP enables integrative analysis of cross-platform and between-laboratory ChIP-chip or ChIP-seq data. Genome Biology. 12: R11. PMID 21284836 DOI: 10.1186/Gb-2011-12-2-R11  0.644
2011 Daines B, Wang H, Wang L, Li Y, Han Y, Emmert D, Gelbart W, Wang X, Li W, Gibbs R, Chen R. The Drosophila melanogaster transcriptome by paired-end RNA sequencing. Genome Research. 21: 315-24. PMID 21177959 DOI: 10.1101/Gr.107854.110  0.307
2011 Jeong M, Sun D, Luo M, Ergen A, Gu H, Bock C, Meissner A, Darlington G, Li W, Goodell MA. Genome Wide DNA Methylation and Transcriptome Analysis in HSC Aging Blood. 118: 2367-2367. DOI: 10.1182/Blood.V118.21.2367.2367  0.344
2011 Kannan K, Wang L, Wang J, Ittmann M, Li W, Yen L. Abstract 4973: Recurrent chimeric RNAs enriched in human prostate cancer identified by deep-sequencing Cancer Research. 71: 4973-4973. DOI: 10.1158/1538-7445.Am2011-4973  0.311
2010 Chen Z, Wang L, Wang Q, Li W. Histone modifications and chromatin organization in prostate cancer. Epigenomics. 2: 551-60. PMID 21318127 DOI: 10.2217/Epi.10.31  0.311
2010 Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, ... ... Li W, et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature Biotechnology. 28: 1097-105. PMID 20852635 DOI: 10.1038/Nbt.1682  0.302
2010 Lanz RB, Bulynko Y, Malovannaya A, Labhart P, Wang L, Li W, Qin J, Harper M, O'Malley BW. Global characterization of transcriptional impact of the SRC-3 coregulator. Molecular Endocrinology (Baltimore, Md.). 24: 859-72. PMID 20181721 DOI: 10.1210/Me.2009-0499  0.341
2009 Huang J, Chen T, Liu X, Jiang J, Li J, Li D, Liu XS, Li W, Kang J, Pei G. More synergetic cooperation of Yamanaka factors in induced pluripotent stem cells than in embryonic stem cells. Cell Research. 19: 1127-38. PMID 19736564 DOI: 10.1038/Cr.2009.106  0.301
2009 Wang Q, Li W, Zhang Y, Yuan X, Xu K, Yu J, Chen Z, Beroukhim R, Wang H, Lupien M, Wu T, Regan MM, Meyer CA, Carroll JS, Manrai AK, et al. Androgen receptor regulates a distinct transcription program in androgen-independent prostate cancer. Cell. 138: 245-56. PMID 19632176 DOI: 10.1016/J.Cell.2009.04.056  0.568
2009 Xia X, Lemieux ME, Li W, Carroll JS, Brown M, Liu XS, Kung AL. Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis. Proceedings of the National Academy of Sciences of the United States of America. 106: 4260-5. PMID 19255431 DOI: 10.1073/Pnas.0810067106  0.563
2009 Pathiraja T, Xi Y, Lee A, Santen R, Gannon F, Kaipparettu B, Chang J, Li W, Oesterreich S. Estrogen Deprivation Results in Altered DNA Methylation Profile in Breast Cancer Cells – Role in Endocrine Resistance? Cancer Research. 69: 5127-5127. DOI: 10.1158/0008-5472.Sabcs-09-5127  0.353
2008 Yagi S, Hirabayashi K, Sato S, Li W, Takahashi Y, Hirakawa T, Wu G, Hattori N, Hattori N, Ohgane J, Tanaka S, Liu XS, Shiota K. DNA methylation profile of tissue-dependent and differentially methylated regions (T-DMRs) in mouse promoter regions demonstrating tissue-specific gene expression. Genome Research. 18: 1969-78. PMID 18971312 DOI: 10.1101/Gr.074070.107  0.31
2008 Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Model-based analysis of ChIP-Seq (MACS). Genome Biology. 9: R137. PMID 18798982 DOI: 10.1186/Gb-2008-9-9-R137  0.339
2008 Agoulnik IU, Bingman WE, Nakka M, Li W, Wang Q, Liu XS, Brown M, Weigel NL. Target gene-specific regulation of androgen receptor activity by p42/p44 mitogen-activated protein kinase. Molecular Endocrinology (Baltimore, Md.). 22: 2420-32. PMID 18787043 DOI: 10.1210/Me.2007-0481  0.568
2008 Li W, Carroll JS, Brown M, Liu xS. xMAN: extreme MApping of OligoNucleotides. Bmc Genomics. 9: S20. PMID 18366610 DOI: 10.1186/1471-2164-9-S1-S20  0.538
2008 Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M. FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription. Cell. 132: 958-70. PMID 18358809 DOI: 10.1016/J.Cell.2008.01.018  0.564
2008 Johnson DS, Li W, Gordon DB, Bhattacharjee A, Curry B, Ghosh J, Brizuela L, Carroll JS, Brown M, Flicek P, Koch CM, Dunham I, Bieda M, Xu X, Farnham PJ, et al. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets. Genome Research. 18: 393-403. PMID 18258921 DOI: 10.1101/Gr.7080508  0.471
2008 Gottardo R, Li W, Johnson WE, Liu XS. A flexible and powerful bayesian hierarchical model for ChIP-Chip experiments. Biometrics. 64: 468-78. PMID 17888037 DOI: 10.1111/J.1541-0420.2007.00899.X  0.549
2007 O'Neil J, Tchinda J, Gutierrez A, Moreau L, Maser RS, Wong KK, Li W, McKenna K, Liu XS, Feng B, Neuberg D, Silverman L, DeAngelo DJ, Kutok JL, Rothstein R, et al. Alu elements mediate MYB gene tandem duplication in human T-ALL. The Journal of Experimental Medicine. 204: 3059-66. PMID 18070937 DOI: 10.1084/Jem.20071637  0.529
2007 Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS. Model-based analysis of two-color arrays (MA2C). Genome Biology. 8: R178. PMID 17727723 DOI: 10.1186/Gb-2007-8-8-R178  0.59
2007 Wang Q, Li W, Liu XS, Carroll JS, Jänne OA, Keeton EK, Chinnaiyan AM, Pienta KJ, Brown M. A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth. Molecular Cell. 27: 380-92. PMID 17679089 DOI: 10.1016/J.Molcel.2007.05.041  0.569
2007 Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, ... ... Li W, et al. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Genome Biology. 8: R45. PMID 17407547 DOI: 10.1186/Gb-2007-8-4-R45  0.315
2007 Song JS, Maghsoudi K, Li W, Fox E, Quackenbush J, Shirley Liu X. Microarray blob-defect removal improves array analysis. Bioinformatics (Oxford, England). 23: 966-71. PMID 17332024 DOI: 10.1093/Bioinformatics/Btm043  0.432
2006 Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, et al. Genome-wide analysis of estrogen receptor binding sites. Nature Genetics. 38: 1289-97. PMID 17013392 DOI: 10.1038/Ng1901  0.654
2006 Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Model-based analysis of tiling-arrays for ChIP-chip. Proceedings of the National Academy of Sciences of the United States of America. 103: 12457-62. PMID 16895995 DOI: 10.1073/Pnas.0601180103  0.553
2006 Ji X, Li W, Song J, Wei L, Liu XS. CEAS: cis-regulatory element annotation system. Nucleic Acids Research. 34: W551-4. PMID 16845068 DOI: 10.1093/Nar/Gkl322  0.655
2006 Nelson EA, Walker SR, Li W, Liu XS, Frank DA. Identification of human STAT5-dependent gene regulatory elements based on interspecies homology. The Journal of Biological Chemistry. 281: 26216-24. PMID 16840779 DOI: 10.1074/Jbc.M605001200  0.577
2006 Palomero T, Odom DT, O'Neil J, Ferrando AA, Margolin A, Neuberg DS, Winter SS, Larson RS, Li W, Liu XS, Young RA, Look AT. Transcriptional regulatory networks downstream of TAL1/SCL in T-cell acute lymphoblastic leukemia. Blood. 108: 986-92. PMID 16621969 DOI: 10.1182/Blood-2005-08-3482  0.557
2005 Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, Fox EA, Silver PA, Brown M. Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1. Cell. 122: 33-43. PMID 16009131 DOI: 10.1016/J.Cell.2005.05.008  0.594
2005 Li W, Meyer CA, Liu XS. A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences. Bioinformatics (Oxford, England). 21: i274-82. PMID 15961467 DOI: 10.1093/Bioinformatics/Bti1046  0.606
2002 Bao Q, Tian Y, Li W, Xu Z, Xuan Z, Hu S, Dong W, Yang J, Chen Y, Xue Y, Xu Y, Lai X, Huang L, Dong X, Ma Y, et al. A complete sequence of the T. tengcongensis genome. Genome Research. 12: 689-700. PMID 11997336 DOI: 10.1101/Gr.219302  0.305
2002 Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, ... ... Li W, ... ... Li W, et al. A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science (New York, N.Y.). 296: 79-92. PMID 11935017 DOI: 10.1126/Science.1068037  0.302
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