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Robert J Johnston - Publications

Affiliations: 
Johns Hopkins University, Baltimore, MD 
Area:
Neuronal subtype specification; stochastic fate specification; eye development; human retinal organoids
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49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Hadyniak SE, Hagen JFD, Eldred KC, Brenerman B, Hussey KA, McCoy RC, Sauria MEG, Kuchenbecker JA, Reh T, Glass I, Neitz M, Neitz J, Taylor J, Johnston RJ. Retinoic acid signaling regulates spatiotemporal specification of human green and red cones. Plos Biology. 22: e3002464. PMID 38206904 DOI: 10.1371/journal.pbio.3002464  0.774
2023 Liu YV, Santiago CP, Sogunro A, Konar GJ, Hu MW, McNally MM, Lu YC, Flores-Bellver M, Aparicio-Domingo S, Li KV, Li ZL, Agakishiev D, Hadyniak SE, Hussey KA, Creamer TJ, ... ... Johnston RJ, et al. Single-cell transcriptome analysis of xenotransplanted human retinal organoids defines two migratory cell populations of nonretinal origin. Stem Cell Reports. 18: 1138-1154. PMID 37163980 DOI: 10.1016/j.stemcr.2023.04.004  0.791
2022 Urban EA, Chernoff C, Layng KV, Han J, Anderson C, Konzman D, Johnston RJ. Activating and repressing gene expression between chromosomes during stochastic fate specification. Cell Reports. 42: 111910. PMID 36640351 DOI: 10.1016/j.celrep.2022.111910  0.81
2022 Hagen JFD, Roberts N, Johnston RJ. The evolutionary history and spectral tuning of vertebrate visual opsins. Developmental Biology. PMID 36370769 DOI: 10.1016/j.ydbio.2022.10.014  0.685
2022 Roberts NS, Hagen J, Johnston RJ. The diversity of invertebrate visual opsins spanning Protostomia, Deuterostomia, and Cnidaria. Developmental Biology. PMID 36272560 DOI: 10.1016/j.ydbio.2022.10.011  0.69
2022 Voortman L, Anderson C, Urban E, Yuan R, Tran S, Neuhaus-Follini A, Derrick J, Gregor T, Johnston RJ. Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specification in flies. Developmental Cell. PMID 35835116 DOI: 10.1016/j.devcel.2022.06.016  0.78
2022 Hussey KA, Hadyniak SE, Johnston RJ. Patterning and Development of Photoreceptors in the Human Retina. Frontiers in Cell and Developmental Biology. 10: 878350. PMID 35493094 DOI: 10.3389/fcell.2022.878350  0.8
2021 Wahlin KJ, Cheng J, Jurlina SL, Jones MK, Dash NR, Ogata A, Kibria N, Ray S, Eldred KC, Kim C, Heng JS, Phillips J, Johnston RJ, Gamm DM, Berlinicke C, et al. CRISPR Generated SIX6 and POU4F2 Reporters Allow Identification of Brain and Optic Transcriptional Differences in Human PSC-Derived Organoids. Frontiers in Cell and Developmental Biology. 9: 764725. PMID 34869356 DOI: 10.3389/fcell.2021.764725  0.753
2021 Voortman L, Johnston RJ. Transcriptional repression in stochastic gene expression, patterning, and cell fate specification. Developmental Biology. 481: 129-138. PMID 34688689 DOI: 10.1016/j.ydbio.2021.10.002  0.817
2021 Guy B, Zhang JS, Duncan LH, Johnston RJ. Human neural organoids: Models for developmental neurobiology and disease. Developmental Biology. PMID 34181916 DOI: 10.1016/j.ydbio.2021.06.012  0.757
2021 McNerney C, Johnston RJ. Thyroid hormone signaling specifies cone photoreceptor subtypes during eye development: Insights from model organisms and human stem cell-derived retinal organoids. Vitamins and Hormones. 116: 51-90. PMID 33752828 DOI: 10.1016/bs.vh.2021.03.001  0.811
2020 Miller AC, Urban E, Lyons EL, Herman TG, Johnston RJ. Interdependent regulation of stereotyped and stochastic photoreceptor fates in the fly eye. Developmental Biology. PMID 33333066 DOI: 10.1016/j.ydbio.2020.12.008  0.812
2020 Eldred KC, Avelis C, Johnston RJ, Roberts E. Modeling binary and graded cone cell fate patterning in the mouse retina. Plos Computational Biology. 16: e1007691. PMID 32150546 DOI: 10.1371/Journal.Pcbi.1007691  0.785
2019 Viets K, Sauria MEG, Chernoff C, Rodriguez Viales R, Echterling M, Anderson C, Tran S, Dove A, Goyal R, Voortman L, Gordus A, Furlong EEM, Taylor J, Johnston RJ. Characterization of Button Loci that Promote Homologous Chromosome Pairing and Cell-Type-Specific Interchromosomal Gene Regulation. Developmental Cell. PMID 31607649 DOI: 10.1016/J.Devcel.2019.09.007  0.754
2018 Urban EA, Johnston RJ. Buffering and Amplifying Transcriptional Noise During Cell Fate Specification. Frontiers in Genetics. 9: 591. PMID 30555516 DOI: 10.3389/Fgene.2018.00591  0.737
2018 Eldred KC, Hadyniak SE, Hussey KA, Brenerman B, Zhang PW, Chamling X, Sluch VM, Welsbie DS, Hattar S, Taylor J, Wahlin K, Zack DJ, Johnston RJ. Thyroid hormone signaling specifies cone subtypes in human retinal organoids. Science (New York, N.Y.). 362. PMID 30309916 DOI: 10.1126/Science.Aau6348  0.777
2018 Datta RR, Ling J, Kurland J, Ren X, Xu Z, Yucel G, Moore J, Shokri L, Baker I, Bishop T, Struffi P, Levina R, Bulyk ML, Johnston RJ, Small S. A feed-forward relay integrates the regulatory activities of Bicoid and Orthodenticle via sequential binding to suboptimal sites. Genes & Development. PMID 29764918 DOI: 10.1101/Gad.311985.118  0.366
2018 Duan H, de Navas LF, Hu F, Sun K, Mavromatakis YE, Viets K, Zhou C, Kavaler J, Johnston RJ, Tomlinson A, Lai EC. Thecluster represses receptor tyrosine kinase signaling to determine cell fates in theeye. Development (Cambridge, England). PMID 29540498 DOI: 10.1242/Dev.159053  0.803
2017 Anderson C, Reiss I, Zhou C, Cho A, Siddiqi H, Mormann B, Avelis CM, Deford P, Bergland A, Roberts E, Taylor J, Vasiliauskas D, Johnston RJ. Natural variation in stochastic photoreceptor specification and color preference in Drosophila. Elife. 6. PMID 29251595 DOI: 10.7554/Elife.29593  0.763
2017 Yan J, Anderson C, Viets K, Tran S, Goldberg G, Small S, Johnston RJ. Regulatory logic driving stable levels of defective proventriculus expression during terminal photoreceptor specification in flies. Development (Cambridge, England). PMID 28126841 DOI: 10.1242/Dev.144030  0.818
2017 Anderson C, Reiss I, Zhou C, Cho A, Siddiqi H, Mormann B, Avelis CM, Deford P, Bergland A, Roberts E, Taylor J, Vasiliauskas D, Johnston RJ. Author response: Natural variation in stochastic photoreceptor specification and color preference in Drosophila Elife. DOI: 10.7554/Elife.29593.017  0.697
2016 Viets K, Eldred KC, Johnston RJ. Mechanisms of Photoreceptor Patterning in Vertebrates and Invertebrates. Trends in Genetics : Tig. PMID 27615122 DOI: 10.1016/J.Tig.2016.07.004  0.792
2016 Jukam D, Viets K, Anderson C, Zhou C, DeFord P, Yan J, Cao J, Johnston RJ. The BEAF-32 insulator protein is required for Hippo pathway activity in the terminal differentiation of neuronal subtypes. Development (Cambridge, England). PMID 27226322 DOI: 10.1242/Dev.134700  0.8
2014 Johnston RJ, Desplan C. Interchromosomal communication coordinates intrinsically stochastic expression between alleles. Science (New York, N.Y.). 343: 661-5. PMID 24503853 DOI: 10.1126/Science.1243039  0.643
2014 Cochella L, Tursun B, Hsieh YW, Galindo S, Johnston RJ, Chuang CF, Hobert O. Two distinct types of neuronal asymmetries are controlled by the Caenorhabditis elegans zinc finger transcription factor die-1. Genes & Development. 28: 34-43. PMID 24361693 DOI: 10.1101/Gad.233643.113  0.599
2013 Hsiao HY, Jukam D, Johnston R, Desplan C. The neuronal transcription factor erect wing regulates specification and maintenance of Drosophila R8 photoreceptor subtypes. Developmental Biology. 381: 482-90. PMID 23850772 DOI: 10.1016/J.Ydbio.2013.07.001  0.832
2013 Johnston RJ. Lessons about terminal differentiation from the specification of color-detecting photoreceptors in the Drosophila retina. Annals of the New York Academy of Sciences. 1293: 33-44. PMID 23782311 DOI: 10.1111/Nyas.12178  0.501
2013 Thanawala SU, Rister J, Goldberg GW, Zuskov A, Olesnicky EC, Flowers JM, Jukam D, Purugganan MD, Gavis ER, Desplan C, Johnston RJ. Regional modulation of a stochastically expressed factor determines photoreceptor subtypes in the Drosophila retina. Developmental Cell. 25: 93-105. PMID 23597484 DOI: 10.1016/J.Devcel.2013.02.016  0.811
2012 Hsiao HY, Johnston RJ, Jukam D, Vasiliauskas D, Desplan C, Rister J. Dissection and immunohistochemistry of larval, pupal and adult Drosophila retinas. Journal of Visualized Experiments : Jove. e4347. PMID 23183823 DOI: 10.3791/4347  0.8
2012 Sood P, Johnston RJ, Kussell E. Stochastic de-repression of Rhodopsins in single photoreceptors of the fly retina. Plos Computational Biology. 8: e1002357. PMID 22319431 DOI: 10.1371/Journal.Pcbi.1002357  0.47
2011 Vasiliauskas D, Mazzoni EO, Sprecher SG, Brodetskiy K, Johnston RJ, Lidder P, Vogt N, Celik A, Desplan C. Feedback from rhodopsin controls rhodopsin exclusion in Drosophila photoreceptors. Nature. 479: 108-12. PMID 21983964 DOI: 10.1038/Nature10451  0.821
2011 Johnston RJ, Otake Y, Sood P, Vogt N, Behnia R, Vasiliauskas D, McDonald E, Xie B, Koenig S, Wolf R, Cook T, Gebelein B, Kussell E, Nakagoshi H, Desplan C. Interlocked feedforward loops control cell-type-specific Rhodopsin expression in the Drosophila eye. Cell. 145: 956-68. PMID 21663797 DOI: 10.1016/J.Cell.2011.05.003  0.837
2010 Johnston RJ, Desplan C. Stochastic mechanisms of cell fate specification that yield random or robust outcomes. Annual Review of Cell and Developmental Biology. 26: 689-719. PMID 20590453 DOI: 10.1146/Annurev-Cellbio-100109-104113  0.583
2010 Johnston RJ, Desplan C. Preview. A penetrating look at stochasticity in development. Cell. 140: 610-2. PMID 20211129 DOI: 10.1016/J.Cell.2010.02.018  0.578
2009 Vasiliauskas D, Johnston R, Desplan C. Maintaining a stochastic neuronal cell fate decision. Genes & Development. 23: 385-90. PMID 19240127 DOI: 10.1101/Gad.1780509  0.612
2008 Johnston RJ, Desplan C. Stochastic neuronal cell fate choices. Current Opinion in Neurobiology. 18: 20-7. PMID 18511260 DOI: 10.1016/J.Conb.2008.04.004  0.603
2008 Mazzoni EO, Celik A, Wernet MF, Vasiliauskas D, Johnston RJ, Cook TA, Pichaud F, Desplan C. Iroquois complex genes induce co-expression of rhodopsins in Drosophila. Plos Biology. 6: e97. PMID 18433293 DOI: 10.1371/Journal.Pbio.0060097  0.806
2007 Sarin S, O'Meara MM, Flowers EB, Antonio C, Poole RJ, Didiano D, Johnston RJ, Chang S, Narula S, Hobert O. Genetic screens for Caenorhabditis elegans mutants defective in left/right asymmetric neuronal fate specification. Genetics. 176: 2109-30. PMID 17717195 DOI: 10.1534/Genetics.107.075648  0.781
2006 Johnston RJ, Copeland JW, Fasnacht M, Etchberger JF, Liu J, Honig B, Hobert O. An unusual Zn-finger/FH2 domain protein controls a left/right asymmetric neuronal fate decision in C. elegans. Development (Cambridge, England). 133: 3317-28. PMID 16887832 DOI: 10.1242/Dev.02494  0.804
2005 Johnston RJ, Hobert O. A novel C. elegans zinc finger transcription factor, lsy-2, required for the cell type-specific expression of the lsy-6 microRNA. Development (Cambridge, England). 132: 5451-60. PMID 16291785 DOI: 10.1242/Dev.02163  0.647
2005 Johnston RJ, Chang S, Etchberger JF, Ortiz CO, Hobert O. MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision. Proceedings of the National Academy of Sciences of the United States of America. 102: 12449-54. PMID 16099833 DOI: 10.1073/Pnas.0505530102  0.787
2004 Chang S, Johnston RJ, Frøkjaer-Jensen C, Lockery S, Hobert O. MicroRNAs act sequentially and asymmetrically to control chemosensory laterality in the nematode. Nature. 430: 785-9. PMID 15306811 DOI: 10.1038/Nature02752  0.674
2003 Johnston RJ, Hobert O. A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans. Nature. 426: 845-9. PMID 14685240 DOI: 10.1038/Nature02255  0.598
2003 Chang S, Johnston RJ, Hobert O. A transcriptional regulatory cascade that controls left/right asymmetry in chemosensory neurons of C. elegans. Genes & Development. 17: 2123-37. PMID 12952888 DOI: 10.1101/Gad.1117903  0.728
2002 Melia TJ, Weber T, McNew JA, Fisher LE, Johnston RJ, Parlati F, Mahal LK, Sollner TH, Rothman JE. Regulation of membrane fusion by the membrane-proximal coil of the t-SNARE during zippering of SNAREpins. The Journal of Cell Biology. 158: 929-40. PMID 12213837 DOI: 10.1083/Jcb.200112081  0.461
2002 Hobert O, Johnston RJ, Chang S. Left-right asymmetry in the nervous system: the Caenorhabditis elegans model. Nature Reviews. Neuroscience. 3: 629-40. PMID 12154364 DOI: 10.1038/Nrn897  0.649
2000 McNew JA, Parlati F, Fukuda R, Johnston RJ, Paz K, Paumet F, Söllner TH, Rothman JE. Compartmental specificity of cellular membrane fusion encoded in SNARE proteins. Nature. 407: 153-9. PMID 11001046 DOI: 10.1038/35025000  0.467
2000 McNew JA, Weber T, Parlati F, Johnston RJ, Melia TJ, Söllner TH, Rothman JE. Close is not enough: SNARE-dependent membrane fusion requires an active mechanism that transduces force to membrane anchors. The Journal of Cell Biology. 150: 105-17. PMID 10893260 DOI: 10.1083/Jcb.150.1.105  0.47
2000 Weber T, Parlati F, McNew JA, Johnston RJ, Westermann B, Söllner TH, Rothman JE. SNAREpins are functionally resistant to disruption by NSF and alphaSNAP. The Journal of Cell Biology. 149: 1063-72. PMID 10831610 DOI: 10.1083/Jcb.149.5.1063  0.475
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