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Kyle Bibby, Ph.D. - Publications

Affiliations: 
2012 Environmental Engineering Yale University, New Haven, CT 
Area:
Environmental Engineering, Microbiology Biology, Virology Biology, Genetics
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Maal-Bared R, Brisolara K, Munakata N, Bibby K, Gerba C, Sobsey M, Schaefer S, Swift J, Gary L, Sherchan S, Babatola A, Bastian R, Olabode L, Reimers R, Rubin A. Implications of SARS-CoV-2 on Current and Future Operation and Management of Wastewater Systems. Water Environment Research : a Research Publication of the Water Environment Federation. PMID 32866312 DOI: 10.1002/Wer.1446  0.31
2020 Gonzalez R, Curtis K, Bivins A, Bibby K, Weir MH, Yetka K, Thompson H, Keeling D, Mitchell J, Gonzalez D. COVID-19 surveillance in Southeastern Virginia using wastewater-based epidemiology. Water Research. 186: 116296. PMID 32841929 DOI: 10.1016/J.Watres.2020.116296  0.348
2020 Crank K, Li X, North D, Ferraro GB, Iaconelli M, Mancini P, La Rosa G, Bibby K. CrAssphage abundance and correlation with molecular viral markers in Italian wastewater. Water Research. 184: 116161. PMID 32810770 DOI: 10.1016/J.Watres.2020.116161  0.37
2020 Kitajima M, Ahmed W, Bibby K, Carducci A, Gerba CP, Hamilton KA, Haramoto E, Rose JB. SARS-CoV-2 in wastewater: State of the knowledge and research needs. The Science of the Total Environment. 739: 139076. PMID 32758929 DOI: 10.1016/J.Scitotenv.2020.139076  0.393
2020 Ahmed W, Bertsch PM, Angel N, Bibby K, Bivins A, Dierens L, Edson J, Ehret J, Gyawali P, Hamilton K, Hosegood I, Hugenholtz P, Jiang G, Kitajima M, Sichani HT, et al. Detection of SARS-CoV-2 RNA in commercial passenger aircraft and cruise ship wastewater: a surveillance tool for assessing the presence of COVID-19 infected travelers. Journal of Travel Medicine. PMID 32662867 DOI: 10.1093/Jtm/Taaa116  0.305
2020 Bivins A, North D, Ahmad A, Ahmed W, Alm E, Been F, Bhattacharya P, Bijlsma L, Boehm AB, Brown J, Buttiglieri G, Calabro V, Carducci A, Castiglioni S, Cetecioglu Gurol Z, ... ... Bibby K, et al. Wastewater-Based Epidemiology: Global Collaborative to Maximize Contributions in the Fight Against COVID-19. Environmental Science & Technology. PMID 32530639 DOI: 10.1021/Acs.Est.0C02388  0.585
2020 Ahmed W, Angel N, Edson J, Bibby K, Bivins A, O'Brien JW, Choi PM, Kitajima M, Simpson SL, Li J, Tscharke B, Verhagen R, Smith WJM, Zaugg J, Dierens L, et al. First confirmed detection of SARS-CoV-2 in untreated wastewater in Australia: A proof of concept for the wastewater surveillance of COVID-19 in the community. The Science of the Total Environment. 728: 138764. PMID 32387778 DOI: 10.1016/J.Scitotenv.2020.138764  0.34
2020 Wu Z, Greaves J, Arp L, Stone D, Bibby K. Comparative fate of CrAssphage with culturable and molecular fecal pollution indicators during activated sludge wastewater treatment. Environment International. 136: 105452. PMID 31931347 DOI: 10.1016/J.Envint.2019.105452  0.388
2020 Prussin AJ, Belser JA, Bischoff W, Kelley ST, Lin K, Lindsley WG, Nshimyimana JP, Schuit M, Wu Z, Bibby K, Marr LC. Viruses in the Built Environment (VIBE) meeting report. Microbiome. 8: 1. PMID 31901242 DOI: 10.1186/S40168-019-0777-4  0.388
2020 Bivins A, Crank K, Greaves J, North D, Wu Z, Bibby K. Cross-assembly phage and pepper mild mottle virus as viral water quality monitoring tools—potential, research gaps, and way forward Current Opinion in Environmental Science & Health. 16: 54-61. DOI: 10.1016/J.Coesh.2020.02.001  0.399
2019 Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, Cinek O, Aziz RK, McNair K, Barr JJ, Bibby K, Brouns SJJ, Cazares A, de Jonge PA, Desnues C, et al. Global phylogeography and ancient evolution of the widespread human gut virus crAssphage. Nature Microbiology. PMID 31285584 DOI: 10.1038/S41564-019-0494-6  0.415
2019 Hamza IA, Bibby K. Critical issues in application of molecular methods to environmental virology. Journal of Virological Methods. 266: 11-24. PMID 30659861 DOI: 10.1016/J.Jviromet.2019.01.008  0.391
2019 Lipus D, Vikram A, Hammack R, Bibby K, Gulliver D. The Effects of Sample Storage Conditions on the Microbial Community Composition in Hydraulic Fracturing Produced Water Geomicrobiology Journal. 36: 630-638. DOI: 10.1080/01490451.2019.1599470  0.311
2019 Crank K, Petersen S, Bibby K. Quantitative Microbial Risk Assessment of Swimming in Sewage Impacted Waters Using CrAssphage and Pepper Mild Mottle Virus in a Customizable Model Environmental Science & Technology Letters. 6: 571-577. DOI: 10.1021/Acs.Estlett.9B00468  0.38
2019 Stachler E, Crank K, Bibby K. Co-Occurrence of crAssphage with Antibiotic Resistance Genes in an Impacted Urban Watershed Environmental Science & Technology Letters. 6: 216-221. DOI: 10.1021/Acs.Estlett.9B00130  0.349
2018 Akyon B, McLaughlin M, Hernández F, Blotevogel J, Bibby K. Characterization and biological removal of organic compounds from hydraulic fracturing produced water. Environmental Science. Processes & Impacts. PMID 30451271 DOI: 10.1039/C8Em00354H  0.303
2018 Gulliver D, Lipus D, Ross D, Bibby K. Insights into microbial community structure and function from a shallow, simulated CO leakage aquifer demonstrate microbial selection and adaptation. Environmental Microbiology Reports. PMID 29984552 DOI: 10.1111/1758-2229.12675  0.372
2018 Stachler E, Akyon B, de Carvalho NA, Ference C, Bibby K. Correlation of crAssphage qPCR Markers with Culturable and Molecular Indicators of Human Fecal Pollution in an Impacted Urban Watershed. Environmental Science & Technology. PMID 29874457 DOI: 10.1021/Acs.Est.8B00638  0.411
2018 Lipus D, Roy D, Khan E, Ross D, Vikram A, Gulliver D, Hammack R, Bibby K. Microbial communities in bakken region produced water. Fems Microbiology Letters. PMID 29688457 DOI: 10.1093/Femsle/Fny107  0.317
2017 Shamarina D, Stoyantcheva I, Mason CE, Bibby K, Elhaik E. Communicating the promise, risks, and ethics of large-scale, open space microbiome and metagenome research. Microbiome. 5: 132. PMID 28978331 DOI: 10.1186/S40168-017-0349-4  0.351
2017 Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC. Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement. Environmental Science & Technology. PMID 28700235 DOI: 10.1021/Acs.Est.7B02703  0.414
2017 Aquino de Carvalho N, Stachler E, Cimabue N, Bibby K. Evaluation of Phi6 Persistence and Suitability as an Enveloped Virus Surrogate. Environmental Science & Technology. PMID 28657725 DOI: 10.1021/Acs.Est.7B01296  0.306
2017 Ma X, Vikram A, Casson LW, Bibby K. Centralized Drinking Water Treatment Operations Shape Bacterial and Fungal Community Structure. Environmental Science & Technology. PMID 28562026 DOI: 10.1021/Acs.Est.7B00768  0.337
2017 Haas CN, Rycroft T, Bibby K, Casson L. Risks from Ebolavirus Discharge from Hospitals to Sewer Workers. Water Environment Research : a Research Publication of the Water Environment Federation. 89: 357-368. PMID 28377005 DOI: 10.2175/106143017X14839994523181  0.339
2017 Lipus D, Vikram A, Ross D, Bain D, Gulliver D, Hammack R, Bibby K. Predominance and Metabolic Potential of Halanaerobium in Produced Water from Hydraulically Fractured Marcellus Shale Wells. Applied and Environmental Microbiology. PMID 28159795 DOI: 10.1128/Aem.02659-16  0.344
2016 Vikram A, Lipus D, Bibby K. Metatranscriptome analysis of active microbial communities in produced water samples from the Marcellus Shale. Microbial Ecology. PMID 27457653 DOI: 10.1007/S00248-016-0811-Z  0.336
2016 Adams RI, Bhangar S, Dannemiller KC, Eisen JA, Fierer N, Gilbert JA, Green JL, Marr LC, Miller SL, Siegel JA, Stephens B, Waring MS, Bibby K. Ten questions concerning the microbiomes of buildings Building and Environment. 109: 224-234. DOI: 10.1016/J.Buildenv.2016.09.001  0.392
2015 Bibby K, Fischer RJ, Casson LW, Stachler E, Haas CN, Munster VJ. Persistence of Ebola Virus in Sterilized Wastewater. Environmental Science & Technology Letters. 2: 245-249. PMID 26523283 DOI: 10.1021/Acs.Estlett.5B00193  0.313
2015 Akyon B, Stachler E, Wei N, Bibby K. Microbial mats as a biological treatment approach for saline wastewaters: the case of produced water from hydraulic fracturing. Environmental Science & Technology. 49: 6172-80. PMID 25867284 DOI: 10.1021/Es505142T  0.307
2015 Ma X, Baron JL, Vikram A, Stout JE, Bibby K. Fungal diversity and presence of potentially pathogenic fungi in a hospital hot water system treated with on-site monochloramine. Water Research. 71: 197-206. PMID 25618520 DOI: 10.1016/J.Watres.2014.12.052  0.354
2015 Stephens B, Adams RI, Bhangar S, Bibby K, Waring MS. From commensalism to mutualism: integrating the microbial ecology, building science, and indoor air communities to advance research on the indoor microbiome. Indoor Air. 25: 1-3. PMID 25594131 DOI: 10.1111/Ina.12167  0.346
2015 Bibby K, Casson LW, Stachler E, Haas CN. Ebola virus persistence in the environment: State of the knowledge and research needs Environmental Science and Technology Letters. 2: 2-6. DOI: 10.1021/Ez5003715  0.357
2014 Vikram A, Lipus D, Bibby K. Produced water exposure alters bacterial response to biocides. Environmental Science & Technology. 48: 13001-9. PMID 25279933 DOI: 10.1021/Es5036915  0.307
2014 Baron JL, Vikram A, Duda S, Stout JE, Bibby K. Shift in the microbial ecology of a hospital hot water system following the introduction of an on-site monochloramine disinfection system. Plos One. 9: e102679. PMID 25033448 DOI: 10.1371/Journal.Pone.0102679  0.384
2014 Good M, Sodhi CP, Ozolek JA, Buck RH, Goehring KC, Thomas DL, Vikram A, Bibby K, Morowitz MJ, Firek B, Lu P, Hackam DJ. Lactobacillus rhamnosus HN001 decreases the severity of necrotizing enterocolitis in neonatal mice and preterm piglets: evidence in mice for a role of TLR9. American Journal of Physiology. Gastrointestinal and Liver Physiology. 306: G1021-32. PMID 24742987 DOI: 10.1152/Ajpgi.00452.2013  0.313
2014 Yamamoto N, Bibby K. Clustering of fungal community internal transcribed spacer sequence data obscures taxonomic diversity. Environmental Microbiology. 16: 2491-500. PMID 24428124 DOI: 10.1111/1462-2920.12390  0.346
2014 Bibby K. Improved bacteriophage genome data is necessary for integrating viral and bacterial ecology. Microbial Ecology. 67: 242-4. PMID 24253663 DOI: 10.1007/S00248-013-0325-X  0.415
2014 Yamamoto N, Dannemiller KC, Bibby K, Peccia J. Identification accuracy and diversity reproducibility associated with internal transcribed spacer-based fungal taxonomic library preparation. Environmental Microbiology. 16: 2764-76. PMID 24237760 DOI: 10.1111/1462-2920.12338  0.653
2014 Dannemiller KC, Reeves D, Bibby K, Yamamoto N, Peccia J. Fungal high-throughput taxonomic identification tool for use with next-generation sequencing (FHiTINGS). Journal of Basic Microbiology. 54: 315-21. PMID 23765392 DOI: 10.1002/Jobm.201200507  0.63
2014 Stachler E, Bibby K. Metagenomic Evaluation of the Highly Abundant Human Gut Bacteriophage CrAssphage for Source Tracking of Human Fecal Pollution Environmental Science & Technology Letters. 1: 405-409. DOI: 10.1021/Ez500266S  0.395
2013 Bibby K, Peccia J. Prevalence of respiratory adenovirus species B and C in sewage sludge. Environmental Science. Processes & Impacts. 15: 336-8. PMID 25208697 DOI: 10.1039/C2Em30831B  0.632
2013 Bibby K. Metagenomic identification of viral pathogens. Trends in Biotechnology. 31: 275-9. PMID 23415279 DOI: 10.1016/J.Tibtech.2013.01.016  0.406
2013 Bibby K, Peccia J. Identification of viral pathogen diversity in sewage sludge by metagenome analysis. Environmental Science & Technology. 47: 1945-51. PMID 23346855 DOI: 10.1021/Es305181X  0.685
2013 Rismani-Yazdi H, Carver SM, Christy AD, Yu Z, Bibby K, Peccia J, Tuovinen OH. Suppression of methanogenesis in cellulose-fed microbial fuel cells in relation to performance, metabolite formation, and microbial population. Bioresource Technology. 129: 281-8. PMID 23262001 DOI: 10.1016/J.Biortech.2012.10.137  0.588
2012 Yates MD, Kiely PD, Call DF, Rismani-Yazdi H, Bibby K, Peccia J, Regan JM, Logan BE. Convergent development of anodic bacterial communities in microbial fuel cells. The Isme Journal. 6: 2002-13. PMID 22572637 DOI: 10.1038/Ismej.2012.42  0.605
2012 Wong K, Fong TT, Bibby K, Molina M. Application of enteric viruses for fecal pollution source tracking in environmental waters. Environment International. 45: 151-64. PMID 22537583 DOI: 10.1016/J.Envint.2012.02.009  0.425
2012 Hospodsky D, Qian J, Nazaroff WW, Yamamoto N, Bibby K, Rismani-Yazdi H, Peccia J. Human occupancy as a source of indoor airborne bacteria. Plos One. 7: e34867. PMID 22529946 DOI: 10.1371/Journal.Pone.0034867  0.742
2012 Yamamoto N, Bibby K, Qian J, Hospodsky D, Rismani-Yazdi H, Nazaroff WW, Peccia J. Particle-size distributions and seasonal diversity of allergenic and pathogenic fungi in outdoor air. The Isme Journal. 6: 1801-11. PMID 22476354 DOI: 10.1038/Ismej.2012.30  0.753
2011 Viau E, Bibby K, Paez-Rubio T, Peccia J. Toward a consensus view on the infectious risks associated with land application of sewage sludge. Environmental Science & Technology. 45: 5459-69. PMID 21644497 DOI: 10.1021/Es200566F  0.741
2011 Rismani-Yazdi H, Haznedaroglu BZ, Bibby K, Peccia J. Transcriptome sequencing and annotation of the microalgae Dunaliella tertiolecta: pathway description and gene discovery for production of next-generation biofuels. Bmc Genomics. 12: 148. PMID 21401935 DOI: 10.1186/1471-2164-12-148  0.604
2011 Bibby K, Viau E, Peccia J. Viral metagenome analysis to guide human pathogen monitoring in environmental samples. Letters in Applied Microbiology. 52: 386-92. PMID 21272046 DOI: 10.1111/J.1472-765X.2011.03014.X  0.754
2011 Peccia J, Hospodsky D, Bibby K. New Directions: A revolution in DNA sequencing now allows for the meaningful integration of biology with aerosol science Atmospheric Environment. 45: 1896-1897. DOI: 10.1016/J.Atmosenv.2010.11.037  0.709
2010 Bibby K, Viau E, Peccia J. Pyrosequencing of the 16S rRNA gene to reveal bacterial pathogen diversity in biosolids. Water Research. 44: 4252-60. PMID 20566210 DOI: 10.1016/J.Watres.2010.05.039  0.767
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