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Matthew R. Ronshaugen, Ph.D. - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Dube CT, Ong YHB, Wemyss K, Krishnan S, Tan TJ, Janela B, Grainger JR, Ronshaugen M, Mace KA, Lim CY. Age-Related Alterations in Macrophage Distribution and Function Are Associated With Delayed Cutaneous Wound Healing. Frontiers in Immunology. 13: 943159. PMID 35874681 DOI: 10.3389/fimmu.2022.943159  0.581
2022 Gallicchio L, Griffiths-Jones S, Ronshaugen M. miR-9a regulates levels of both rhomboid mRNA and protein in the early Drosophila melanogaster embryo. G3 (Bethesda, Md.). PMID 35143618 DOI: 10.1093/g3journal/jkac026  0.78
2021 Gallicchio L, Griffiths-Jones S, Ronshaugen M. Corrigendum to: Single-cell visualization of mir-9a and Senseless co-expression during Drosophila melanogaster embryonic and larval peripheral nervous system development. G3 (Bethesda, Md.). 11. PMID 33824976 DOI: 10.1093/g3journal/jkab048  0.772
2021 Gallicchio L, Griffiths-Jones S, Ronshaugen M. Single-cell visualization of mir-9a and Senseless co-expression during Drosophila melanogaster embryonic and larval peripheral nervous system development. G3 (Bethesda, Md.). 11. PMID 33561238 DOI: 10.1093/g3journal/jkaa010  0.779
2020 Griffiths R, Woods S, Cheng A, Wang P, Griffiths-Jones S, Ronshaugen M, Kimber SJ. The Transcription Factor-microRNA Regulatory Network during hESC-chondrogenesis. Scientific Reports. 10: 4744. PMID 32179818 DOI: 10.1038/S41598-020-61734-4  0.548
2019 Marra AN, Chambers BE, Chambers JM, Drummond BE, Adeeb BD, Wesselman HM, Morales EE, Handa N, Pettini T, Ronshaugen M, Wingert RA. Visualizing gene expression during zebrafish pronephros development and regeneration. Methods in Cell Biology. 154: 183-215. PMID 31493818 DOI: 10.1016/Bs.Mcb.2019.06.003  0.37
2017 Ninova M, Griffiths-Jones S, Ronshaugen M. Abundant expression of somatic transposon-derived piRNAs throughout Tribolium castaneum embryogenesis. Genome Biology. 18: 184. PMID 28950880 DOI: 10.1186/S13059-017-1304-1  0.371
2017 Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, Akiyama-Oda Y, Esposito L, Bechsgaard J, Bilde T, Buffry AD, Chao H, Dinh H, Doddapaneni H, Dugan S, ... ... Ronshaugen M, et al. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. Bmc Biology. 15: 62. PMID 28756775 DOI: 10.1186/S12915-017-0399-X  0.302
2016 Leite DJ, Ninova M, Hilbrant M, Arif S, Griffiths-Jones S, Ronshaugen M, McGregor AP. Pervasive microRNA duplication in chelicerates: insights from the embryonic microRNA repertoire of the spider Parasteatoda tepidariorum. Genome Biology and Evolution. PMID 27324919 DOI: 10.1093/Gbe/Evw143  0.467
2016 Hahn I, Ronshaugen M, Sánchez-Soriano N, Prokop A. Functional and Genetic Analysis of Spectraplakins in Drosophila. Methods in Enzymology. 569: 373-405. PMID 26778568 DOI: 10.1016/Bs.Mie.2015.06.022  0.359
2015 Ninova M, Ronshaugen M, Griffiths-Jones S. MicroRNA evolution, expression and function during short germband development in Tribolium castaneum. Genome Research. PMID 26518483 DOI: 10.1101/Gr.193367.115  0.484
2014 Chipman AD, Ferrier DE, Brena C, Qu J, Hughes DS, Schröder R, Torres-Oliva M, Znassi N, Jiang H, Almeida FC, Alonso CR, Apostolou Z, Aqrawi P, Arthur W, Barna JC, ... ... Ronshaugen M, et al. The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima. Plos Biology. 12: e1002005. PMID 25423365 DOI: 10.1371/Journal.Pbio.1002005  0.372
2014 Ninova M, Ronshaugen M, Griffiths-Jones S. Conserved temporal patterns of microRNA expression in Drosophila support a developmental hourglass model. Genome Biology and Evolution. 6: 2459-67. PMID 25169982 DOI: 10.1093/Gbe/Evu183  0.547
2014 Kozomara A, Hunt S, Ninova M, Griffiths-Jones S, Ronshaugen M. Target repression induced by endogenous microRNAs: large differences, small effects. Plos One. 9: e104286. PMID 25141277 DOI: 10.1371/Journal.Pone.0104286  0.426
2014 Ninova M, Ronshaugen M, Griffiths-Jones S. Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis. Rna (New York, N.Y.). 20: 360-72. PMID 24448446 DOI: 10.1261/Rna.041657.113  0.568
2013 Marco A, Kozomara A, Hui JH, Emery AM, Rollinson D, Griffiths-Jones S, Ronshaugen M. Sex-biased expression of microRNAs in Schistosoma mansoni. Plos Neglected Tropical Diseases. 7: e2402. PMID 24069470 DOI: 10.1371/Journal.Pntd.0002402  0.382
2013 Marco A, Ninova M, Ronshaugen M, Griffiths-Jones S. Clusters of microRNAs emerge by new hairpins in existing transcripts. Nucleic Acids Research. 41: 7745-52. PMID 23775791 DOI: 10.1093/Nar/Gkt534  0.363
2013 Arif S, Murat S, Almudi I, Nunes MD, Bortolamiol-Becet D, McGregor NS, Currie JM, Hughes H, Ronshaugen M, Sucena É, Lai EC, Schlötterer C, McGregor AP. Evolution of mir-92a underlies natural morphological variation in Drosophila melanogaster. Current Biology : Cb. 23: 523-8. PMID 23453955 DOI: 10.1016/J.Cub.2013.02.018  0.413
2013 Hui JH, Marco A, Hunt S, Melling J, Griffiths-Jones S, Ronshaugen M. Structure, evolution and function of the bi-directionally transcribed iab-4/iab-8 microRNA locus in arthropods. Nucleic Acids Research. 41: 3352-61. PMID 23335784 DOI: 10.1093/Nar/Gks1445  0.428
2012 Marco A, Macpherson JI, Ronshaugen M, Griffiths-Jones S. MicroRNAs from the same precursor have different targeting properties. Silence. 3: 8. PMID 23016695 DOI: 10.1186/1758-907X-3-8  0.381
2011 Griffiths-Jones S, Hui JH, Marco A, Ronshaugen M. MicroRNA evolution by arm switching. Embo Reports. 12: 172-7. PMID 21212805 DOI: 10.1038/Embor.2010.191  0.395
2010 Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S. Functional shifts in insect microRNA evolution. Genome Biology and Evolution. 2: 686-96. PMID 20817720 DOI: 10.1093/Gbe/Evq053  0.304
2010 Hsia CC, Paré AC, Hannon M, Ronshaugen M, McGinnis W. Silencing of an abdominal Hox gene during early development is correlated with limb development in a crustacean trunk. Evolution & Development. 12: 131-43. PMID 20433454 DOI: 10.1111/J.1525-142X.2010.00399.X  0.763
2009 Hui JH, Griffiths-Jones S, Ronshaugen M. 01-P017 The evolution of miR-10 family function in animal development Mechanisms of Development. 126: S56. DOI: 10.1016/J.Mod.2009.06.018  0.406
2008 Taghli-Lamallem O, Hsia C, Ronshaugen M, McGinnis W. Context-dependent regulation of Hox protein functions by CK2 phosphorylation sites. Development Genes and Evolution. 218: 321-32. PMID 18504607 DOI: 10.1007/S00427-008-0224-1  0.705
2008 Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE. Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters. Development Genes and Evolution. 218: 127-39. PMID 18392875 DOI: 10.1007/S00427-008-0213-4  0.748
2006 Zinzen RP, Cande J, Ronshaugen M, Papatsenko D, Levine M. Evolution of the ventral midline in insect embryos. Developmental Cell. 11: 895-902. PMID 17141163 DOI: 10.1016/J.Devcel.2006.10.012  0.775
2006 Biemar F, Nix DA, Piel J, Peterson B, Ronshaugen M, Sementchenko V, Bell I, Manak JR, Levine MS. Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array. Proceedings of the National Academy of Sciences of the United States of America. 103: 12763-8. PMID 16908844 DOI: 10.1073/Pnas.0604484103  0.772
2005 Ronshaugen M, Biemar F, Piel J, Levine M, Lai EC. The Drosophila microRNA iab-4 causes a dominant homeotic transformation of halteres to wings. Genes & Development. 19: 2947-52. PMID 16357215 DOI: 10.1101/Gad.1372505  0.773
2005 Biemar F, Zinzen R, Ronshaugen M, Sementchenko V, Manak JR, Levine MS. Spatial regulation of microRNA gene expression in the Drosophila embryo. Proceedings of the National Academy of Sciences of the United States of America. 102: 15907-11. PMID 16249329 DOI: 10.1073/Pnas.0507817102  0.62
2004 Ronshaugen M, Levine M. Visualization of trans-homolog enhancer-promoter interactions at the Abd-B Hox locus in the Drosophila embryo. Developmental Cell. 7: 925-32. PMID 15572134 DOI: 10.1016/J.Devcel.2004.11.001  0.504
2004 Stathopoulos A, Tam B, Ronshaugen M, Frasch M, Levine M. pyramus and thisbe: FGF genes that pattern the mesoderm of Drosophila embryos. Genes & Development. 18: 687-99. PMID 15075295 DOI: 10.1101/Gad.1166404  0.743
2002 Ronshaugen M, McGinnis N, Inglis D, Chou D, Zhao J, McGinnis W. Structure and expression patterns of Drosophila TULP and TUSP, members of the tubby-like gene family. Mechanisms of Development. 117: 209-15. PMID 12204260 DOI: 10.1016/S0925-4773(02)00211-3  0.673
2002 Ronshaugen M, McGinnis N, McGinnis W. Hox protein mutation and macroevolution of the insect body plan. Nature. 415: 914-7. PMID 11859370 DOI: 10.1038/Nature716  0.659
2001 Tugores A, Le J, Sorokina I, Snijders AJ, Duyao M, Reddy PS, Carlée L, Ronshaugen M, Mushegian A, Watanaskul T, Chu S, Buckler A, Emtage S, McCormick MK. The Epithelium-specific ETS Protein EHF/ESE-3 is a Context-dependent Transcriptional Repressor Downstream of MAPK Signaling Cascades Journal of Biological Chemistry. 276: 20397-20406. PMID 11259407 DOI: 10.1074/jbc.M010930200  0.319
2000 Guichard A, Roark M, Ronshaugen M, Bier E. brother of rhomboid, a rhomboid-related gene expressed during early Drosophila oogenesis, promotes EGF-R/MAPK signaling. Developmental Biology. 226: 255-66. PMID 11023685 DOI: 10.1006/Dbio.2000.9851  0.417
2000 Walldorf U, Kiewe A, Wickert M, Ronshaugen M, McGinnis W. Homeobrain, a novel paired-like homeobox gene is expressed in the Drosophila brain. Mechanisms of Development. 96: 141-4. PMID 10940637 DOI: 10.1016/S0925-4773(00)00380-4  0.66
1999 Wiellette EL, Harding KW, Mace KA, Ronshaugen MR, Wang FY, McGinnis W. spen encodes an RNP motif protein that interacts with Hox pathways to repress the development of head-like sclerites in the Drosophila trunk. Development (Cambridge, England). 126: 5373-85. PMID 10556062  0.774
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