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Mehmet S. Apaydin, Ph.D. - Publications

Affiliations: 
2004 Stanford University, Palo Alto, CA 
Area:
Bioinformatics
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12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Çetinkaya Ş, Ekren ŞN, Apaydin MS. Progress in Nuclear Vector Replacement for NMR Protein Structure-Based Assignments Rairo - Operations Research. 50: 341-349. DOI: 10.1051/Ro/2015038  0.418
2015 Akhmedov M, Çatay B, Apaydın MS. Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments. Journal of Bioinformatics and Computational Biology. 1550020. PMID 26260854 DOI: 10.1142/S0219720015500201  0.434
2012 Cavuşlar G, Çatay B, Apaydın MS. A tabu search approach for the NMR protein structure-based assignment problem. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 9: 1621-8. PMID 23221084 DOI: 10.1109/Tcbb.2012.122  0.408
2012 Erdoǧan H, Apaydin MS. Incorporating amino acid typing into Nuclear Magnetic Resonance protein structure-based assignments Journal of Proteomics and Bioinformatics. 5: 116-121. DOI: 10.4172/Jpb.1000222  0.38
2011 Apaydin MS, Çatay B, Patrick N, Donald BR. NVR-BIP: Nuclear Vector Replacement using Binary Integer Programming for NMR Structure-Based Assignments. The Computer Journal. 54: 708-716. PMID 25580019 DOI: 10.1093/comjnl/bxp120  0.357
2008 Apaydin MS, Conitzer V, Donald BR. Structure-based protein NMR assignments using native structural ensembles. Journal of Biomolecular Nmr. 40: 263-76. PMID 18365752 DOI: 10.1007/S10858-008-9230-X  0.422
2007 Chiang TH, Apaydin MS, Brutlag DL, Hsu D, Latombe JC. Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 578-93. PMID 17683262 DOI: 10.1089/Cmb.2007.R004  0.543
2006 Chiang TH, Apaydin MS, Brutlag DL, Hsu D, Latombe JC. Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3909: 410-424. DOI: 10.1007/11732990_34  0.536
2004 Apaydin MS, Brutlag DL, Guestrin C, Hsu D, Latombe JC. Stochastic conformational roadmaps for computing ensemble properties of molecular motion Springer Tracts in Advanced Robotics. 7: 131-147. DOI: 10.1007/978-3-540-45058-0_9  0.471
2003 Apaydin MS, Brutlag DL, Guestrin C, Hsu D, Latombe JC, Varma C. Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 10: 257-81. PMID 12935328 DOI: 10.1089/10665270360688011  0.579
2002 Apaydin MS, Guestrin CE, Varma C, Brutlag DL, Latombe JC. Stochastic roadmap simulation for the study of ligand-protein interactions. Bioinformatics (Oxford, England). 18: S18-26. PMID 12385979  0.505
2001 Apaydin MS, Singh AP, Brutlag DL, Latombe JC. Capturing molecular energy landscapes with probabilistic conformational roadmaps Proceedings - Ieee International Conference On Robotics and Automation. 1: 932-939.  0.434
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