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Shelley L. Berger - Publications

Affiliations: 
Cell and Molecular Biology University of Pennsylvania, Philadelphia, PA, United States 
Area:
Molecular Biology, Biochemistry, Genetics
Website:
https://hosting.med.upenn.edu/berger/people/shelley-l-berger/
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Year Citation  Score
2024 Yang JH, Hayano M, Griffin PT, Amorim JA, Bonkowski MS, Apostolides JK, Salfati EL, Blanchette M, Munding EM, Bhakta M, Chew YC, Guo W, Yang X, Maybury-Lewis S, Tian X, ... ... Berger SL, et al. Loss of epigenetic information as a cause of mammalian aging. Cell. 187: 1312-1313. PMID 38428398 DOI: 10.1016/j.cell.2024.01.049  0.405
2024 Tran K, Gilbert M, Vazquez BN, Ianni A, Garcia BA, Vaquero A, Berger S. SIRT7 regulates NUCKS1 chromatin binding to elicit metabolic and inflammatory gene expression in senescence and liver aging. Biorxiv : the Preprint Server For Biology. PMID 38370824 DOI: 10.1101/2024.02.05.578810  0.334
2023 Yu R, Roseman S, Siegenfeld AP, Nguyen SC, Joyce EF, Liau BB, Krantz ID, Alexander KA, Berger SL. CTCF/cohesin organize the ground state of chromatin-nuclear speckle association. Biorxiv : the Preprint Server For Biology. PMID 37961560 DOI: 10.1101/2023.07.22.550178  0.813
2023 Alexander KA, Yu R, Skuli N, Coffey NJ, Nguyen S, Faunce C, Huang H, Dardani IP, Good AL, Lim J, Li C, Biddle N, Joyce EF, Raj A, Lee D, ... ... Berger SL, et al. Nuclear speckles regulate HIF-2α programs and correlate with patient survival in kidney cancer. Biorxiv : the Preprint Server For Biology. PMID 37745397 DOI: 10.1101/2023.09.14.557228  0.791
2023 Ju L, Glastad KM, Sheng L, Gospocic J, Kingwell CJ, Davidson SM, Kocher SD, Bonasio R, Berger SL. Hormonal gatekeeping via the blood-brain barrier governs caste-specific behavior in ants. Cell. PMID 37683635 DOI: 10.1016/j.cell.2023.08.002  0.764
2023 Wang L, Donahue G, Zhang C, Havas A, Lei X, Xu C, Wang W, Vahedi G, Adams PD, Berger SL. Dynamic enhancer interactome promotes senescence and aging. Biorxiv : the Preprint Server For Biology. PMID 37292952 DOI: 10.1101/2023.05.22.541769  0.33
2023 Sen P, Donahue G, Li C, Egervari G, Yang N, Lan Y, Robertson N, Shah PP, Kerkhoven E, Schultz DC, Adams PD, Berger SL. Spurious intragenic transcription is a feature of mammalian cellular senescence and tissue aging. Nature Aging. 3: 402-417. PMID 37117791 DOI: 10.1038/s43587-023-00384-3  0.745
2023 Sheng L, Shields EJ, Gospocic J, Sorida M, Ju L, Byrns CN, Carranza F, Berger SL, Bonini N, Bonasio R. Ensheathing glia promote increased lifespan and healthy brain aging. Aging Cell. e13803. PMID 36840361 DOI: 10.1111/acel.13803  0.763
2023 Kee J, Thudium S, Renner DM, Glastad K, Palozola K, Zhang Z, Li Y, Lan Y, Cesare J, Poleshko A, Kiseleva AA, Truitt R, Cardenas-Diaz FL, Zhang X, Xie X, ... ... Berger SL, et al. Author Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature. PMID 36747034 DOI: 10.1038/s41586-023-05764-8  0.345
2023 Yang JH, Hayano M, Griffin PT, Amorim JA, Bonkowski MS, Apostolides JK, Salfati EL, Blanchette M, Munding EM, Bhakta M, Chew YC, Guo W, Yang X, Maybury-Lewis S, Tian X, ... ... Berger SL, et al. Loss of epigenetic information as a cause of mammalian aging. Cell. PMID 36638792 DOI: 10.1016/j.cell.2022.12.027  0.465
2023 Kee J, Thudium S, Renner DM, Glastad K, Palozola K, Zhang Z, Li Y, Lan Y, Cesare J, Poleshko A, Kiseleva AA, Truitt R, Cardenas-Diaz FL, Zhang X, Xie X, ... ... Berger SL, et al. Publisher Correction: SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature. 1. PMID 36624294 DOI: 10.1038/s41586-022-05631-y  0.349
2022 Kee J, Thudium S, Renner DM, Glastad K, Palozola K, Zhang Z, Li Y, Lan Y, Cesare J, Poleshko A, Kiseleva AA, Truitt R, Cardenas-Diaz FL, Zhang X, Xie X, ... ... Berger SL, et al. SARS-CoV-2 disrupts host epigenetic regulation via histone mimicry. Nature. PMID 36198800 DOI: 10.1038/s41586-022-05282-z  0.417
2022 Alexander DC, Corman T, Mendoza M, Glass A, Belity T, Wu R, Campbell RR, Han J, Keiser AA, Winkler J, Wood MA, Kim T, Garcia BA, Cohen H, Mews P, ... ... Berger SL, et al. Targeting acetyl-CoA metabolism attenuates the formation of fear memories through reduced activity-dependent histone acetylation. Proceedings of the National Academy of Sciences of the United States of America. 119: e2114758119. PMID 35921439 DOI: 10.1073/pnas.2114758119  0.74
2022 Dmitrieva-Posocco O, Wong AC, Lundgren P, Golos AM, Descamps HC, Dohnalová L, Cramer Z, Tian Y, Yueh B, Eskiocak O, Egervari G, Lan Y, Liu J, Fan J, Kim J, ... ... Berger SL, et al. β-Hydroxybutyrate suppresses colorectal cancer. Nature. PMID 35477756 DOI: 10.1038/s41586-022-04649-6  0.703
2022 Mendoza M, Egervari G, Sidoli S, Donahue G, Alexander DC, Sen P, Garcia BA, Berger SL. Enzymatic transfer of acetate on histones from lysine reservoir sites to lysine activating sites. Science Advances. 8: eabj5688. PMID 35061542 DOI: 10.1126/sciadv.abj5688  0.779
2021 Glastad KM, Ju L, Berger SL. Tramtrack acts during late pupal development to direct ant caste identity. Plos Genetics. 17: e1009801. PMID 34550980 DOI: 10.1371/journal.pgen.1009801  0.797
2021 Cao Z, Budinich KA, Huang H, Ren D, Lu B, Zhang Z, Chen Q, Zhou Y, Huang YH, Alikarami F, Kingsley MC, Lenard AK, Wakabayashi A, Khandros E, Bailis W, ... ... Berger SL, et al. ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency. Molecular Cell. PMID 34358447 DOI: 10.1016/j.molcel.2021.07.018  0.349
2020 Grant PA, Winston F, Berger SL. The biochemical and genetic discovery of the SAGA complex. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194669. PMID 33338653 DOI: 10.1016/j.bbagrm.2020.194669  0.394
2020 Egervari G, Glastad KM, Berger SL. Food for thought. Science (New York, N.Y.). 370: 660-662. PMID 33154125 DOI: 10.1126/science.abb4367  0.652
2020 Crespo M, Luense LJ, Arlotto M, Hu J, Dorsey J, García-Oliver E, Shah PP, Pflieger D, Berger SL, Govin J. Systematic genetic and proteomic screens during gametogenesis identify H2BK34 methylation as an evolutionary conserved meiotic mark. Epigenetics & Chromatin. 13: 35. PMID 32933557 DOI: 10.1186/S13072-020-00349-5  0.443
2020 Agudelo Garcia PA, Berger SL. Genetics Meets Epigenetics in Treg Cells and Autoimmunity. Immunity. 52: 897-899. PMID 32553177 DOI: 10.1016/J.Immuni.2020.05.009  0.33
2020 Yang F, Lan Y, Pandey RR, Homolka D, Berger SL, Pillai RS, Bartolomei MS, Wang PJ. TEX15 associates with MILI and silences transposable elements in male germ cells. Genes & Development. PMID 32381626 DOI: 10.1101/Gad.335489.119  0.448
2020 Vizioli MG, Liu T, Miller KN, Robertson NA, Gilroy K, Lagnado AB, Perez-Garcia A, Kiourtis C, Dasgupta N, Lei X, Kruger PJ, Nixon C, Clark W, Jurk D, Bird TG, ... ... Berger SL, et al. Mitochondria-to-nucleus retrograde signaling drives formation of cytoplasmic chromatin and inflammation in senescence. Genes & Development. PMID 32001510 DOI: 10.1101/Gad.331272.119  0.385
2019 Luense LJ, Donahue G, Lin-Shiao E, Rangel R, Weller AH, Bartolomei MS, Berger SL. Gcn5-Mediated Histone Acetylation Governs Nucleosome Dynamics in Spermiogenesis. Developmental Cell. PMID 31761669 DOI: 10.1016/J.Devcel.2019.10.024  0.5
2019 Glastad KM, Graham RJ, Ju L, Roessler J, Brady CM, Berger SL. Epigenetic Regulator CoREST Controls Social Behavior in Ants. Molecular Cell. PMID 31732456 DOI: 10.1016/J.Molcel.2019.10.012  0.805
2019 Mews P, Egervari G, Nativio R, Sidoli S, Donahue G, Lombroso SI, Alexander DC, Riesche SL, Heller EA, Nestler EJ, Garcia BA, Berger SL. Alcohol metabolism contributes to brain histone acetylation. Nature. PMID 31645761 DOI: 10.1038/S41586-019-1700-7  0.747
2019 Chen Z, Ji Z, Ngiow SF, Manne S, Cai Z, Huang AC, Johnson J, Staupe RP, Bengsch B, Xu C, Yu S, Kurachi M, Herati RS, Vella LA, Baxter AE, ... ... Berger SL, et al. TCF-1-Centered Transcriptional Network Drives an Effector versus Exhausted CD8 T Cell-Fate Decision. Immunity. PMID 31606264 DOI: 10.1016/J.Immuni.2019.09.013  0.328
2019 Lin-Shiao E, Lan Y, Welzenbach J, Alexander KA, Zhang Z, Knapp M, Mangold E, Sammons M, Ludwig KU, Berger SL. p63 establishes epithelial enhancers at critical craniofacial development genes. Science Advances. 5: eaaw0946. PMID 31049400 DOI: 10.1126/Sciadv.Aaw0946  0.741
2019 Catizone AN, Good CR, Alexander KA, Berger SL, Sammons MA. Comparison of genotoxic versus nongenotoxic stabilization of p53 provides insight into parallel stress-responsive transcriptional networks. Cell Cycle (Georgetown, Tex.). 1-15. PMID 30966857 DOI: 10.1080/15384101.2019.1593643  0.81
2019 Sen P, Lan Y, Li CY, Sidoli S, Donahue G, Dou Z, Frederick B, Chen Q, Luense LJ, Garcia BA, Dang W, Johnson FB, Adams PD, Schultz DC, Berger SL. Histone Acetyltransferase p300 Induces De Novo Super-Enhancers to Drive Cellular Senescence. Molecular Cell. PMID 30773298 DOI: 10.1016/J.Molcel.2019.01.021  0.762
2018 Schon SB, Luense LJ, Wang X, Bartolomei MS, Coutifaris C, Garcia BA, Berger SL. Histone modification signatures in human sperm distinguish clinical abnormalities. Journal of Assisted Reproduction and Genetics. PMID 30397898 DOI: 10.1007/S10815-018-1354-7  0.45
2018 Li X, Egervari G, Wang Y, Berger SL, Lu Z. Regulation of chromatin and gene expression by metabolic enzymes and metabolites. Nature Reviews. Molecular Cell Biology. PMID 29930302 DOI: 10.1038/S41580-018-0029-7  0.782
2018 Berson A, Nativio R, Berger SL, Bonini NM. Epigenetic Regulation in Neurodegenerative Diseases. Trends in Neurosciences. PMID 29885742 DOI: 10.1016/J.Tins.2018.05.005  0.447
2018 Fraietta JA, Nobles CL, Sammons MA, Lundh S, Carty SA, Reich TJ, Cogdill AP, Morrissette JJD, DeNizio JE, Reddy S, Hwang Y, Gohil M, Kulikovskaya I, Nazimuddin F, Gupta M, ... ... Berger SL, et al. Disruption of TET2 promotes the therapeutic efficacy of CD19-targeted T cells. Nature. PMID 29849141 DOI: 10.1038/S41586-018-0178-Z  0.709
2018 Lee JV, Berry CT, Kim K, Sen P, Kim T, Carrer A, Trefely S, Zhao S, Fernandez S, Barney LE, Schwartz AD, Peyton SR, Snyder NW, Berger SL, Freedman BD, et al. Acetyl-CoA promotes glioblastoma cell adhesion and migration through Ca-NFAT signaling. Genes & Development. PMID 29674394 DOI: 10.1101/Gad.311027.117  0.502
2018 Nativio R, Donahue G, Berson A, Lan Y, Amlie-Wolf A, Tuzer F, Toledo JB, Gosai SJ, Gregory BD, Torres C, Trojanowski JQ, Wang LS, Johnson FB, Bonini NM, Berger SL. Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease. Nature Neuroscience. PMID 29507413 DOI: 10.1038/S41593-018-0101-9  0.305
2018 Lin-Shiao E, Lan Y, Coradin M, Anderson A, Donahue G, Simpson CL, Sen P, Saffie R, Busino L, Garcia BA, Berger SL, Capell BC. KMT2D regulates p63 target enhancers to coordinate epithelial homeostasis. Genes & Development. PMID 29440247 DOI: 10.1101/Gad.306241.117  0.45
2018 Lin-Shiao E, Lan Y, Anderson A, Simpson C, Saffie R, Donahue G, Sen P, Busino L, Garcia B, Berger S, Capell B. 624 KMT2D epigenetically regulates p63 target enhancers to coordinate epithelial homeostasis Journal of Investigative Dermatology. 138: S106. DOI: 10.1016/J.Jid.2018.03.633  0.386
2017 Berson A, Sartoris A, Nativio R, Van Deerlin V, Toledo JB, Porta S, Liu S, Chung CY, Garcia BA, Lee VM, Trojanowski JQ, Johnson FB, Berger SL, Bonini NM. TDP-43 Promotes Neurodegeneration by Impairing Chromatin Remodeling. Current Biology : Cb. PMID 29153328 DOI: 10.1016/J.Cub.2017.10.024  0.452
2017 Wangensteen KJ, Wang YJ, Dou Z, Wang AW, Mosleh-Shirazi E, Horlbeck MA, Gilbert LA, Weissman JS, Berger SL, Kaestner KH. Combinatorial genetics in liver repopulation and carcinogenesis with a novel in vivo CRISPR activation platform. Hepatology (Baltimore, Md.). PMID 29091290 DOI: 10.1002/Hep.29626  0.338
2017 Shema E, Tirosh I, Aylon Y, Huang J, Ye C, Moskovits N, Raver-Shapira N, Minsky N, Pirngruber J, Tarcic G, Hublarova P, Moyal L, Gana-Weisz M, Shiloh Y, Yarden Y, ... ... Berger SL, et al. Corrigendum: The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. Genes & Development. 31: 1926. PMID 29051390 DOI: 10.1101/gad.307207.117  0.348
2017 Dou Z, Ghosh K, Vizioli MG, Zhu J, Sen P, Wangensteen KJ, Simithy J, Lan Y, Lin Y, Zhou Z, Capell BC, Xu C, Xu M, Kieckhaefer JE, Jiang T, ... ... Berger SL, et al. Cytoplasmic chromatin triggers inflammation in senescence and cancer. Nature. PMID 28976970 DOI: 10.1038/Nature24050  0.443
2017 Bose DA, Berger SL. eRNA binding produces tailored CBP activity profiles to regulate gene expression. Rna Biology. 0. PMID 28891741 DOI: 10.1080/15476286.2017.1353862  0.476
2017 Levine AJ, Berger SL. The interplay between epigenetic changes and the p53 protein in stem cells. Genes & Development. 31: 1195-1201. PMID 28765161 DOI: 10.1101/Gad.298984.117  0.451
2017 Mews P, Donahue G, Drake AM, Luczak V, Abel T, Berger SL. Acetyl-CoA synthetase regulates histone acetylation and hippocampal memory. Nature. PMID 28562591 DOI: 10.1038/Nature22405  0.459
2017 Bose DA, Donahue G, Reinberg D, Shiekhattar R, Bonasio R, Berger SL. RNA Binding to CBP Stimulates Histone Acetylation and Transcription. Cell. 168: 135-149.e22. PMID 28086087 DOI: 10.1016/J.Cell.2016.12.020  0.444
2017 Capell B, Donahue G, Seykora J, Berger S. 102 Epigenetic enhancer disruption as a driver of squamous carcinogenesis Journal of Investigative Dermatology. 137: S17. DOI: 10.1016/J.Jid.2017.02.116  0.386
2016 Pauken KE, Sammons MA, Odorizzi PM, Manne S, Godec J, Khan O, Drake AM, Chen Z, Sen D, Kurachi M, Barnitz RA, Bartman C, Bengsch B, Huang AC, Schenkel JM, ... ... Berger SL, et al. Epigenetic stability of exhausted T cells limits durability of reinvigoration by PD-1 blockade. Science (New York, N.Y.). PMID 27789795 DOI: 10.1126/Science.Aaf2807  0.701
2016 Crowe EP, Tuzer F, Gregory BD, Donahue G, Gosai SJ, Cohen J, Leung YY, Yetkin E, Nativio R, Wang LS, Sell C, Bonini NM, Berger SL, Johnson FB, Torres C. Changes in the Transcriptome of Human Astrocytes Accompanying Oxidative Stress-Induced Senescence. Frontiers in Aging Neuroscience. 8: 208. PMID 27630559 DOI: 10.3389/Fnagi.2016.00208  0.332
2016 Hur SK, Freschi A, Ideraabdullah F, Thorvaldsen JL, Luense LJ, Weller AH, Berger SL, Cerrato F, Riccio A, Bartolomei MS. Humanized H19/Igf2 locus reveals diverged imprinting mechanism between mouse and human and reflects Silver-Russell syndrome phenotypes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27621468 DOI: 10.1073/Pnas.1603066113  0.395
2016 Zhu J, Dou Z, Sammons MA, Levine AJ, Berger SL. Lysine methylation represses p53 activity in teratocarcinoma cancer cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535933 DOI: 10.1073/Pnas.1610387113  0.752
2016 Sen P, Shah PP, Nativio R, Berger SL. Epigenetic Mechanisms of Longevity and Aging. Cell. 166: 822-39. PMID 27518561 DOI: 10.1016/J.Cell.2016.07.050  0.33
2016 Nelson DM, Jaber-Hijazi F, Cole JJ, Robertson NA, Pawlikowski JS, Norris KT, Criscione SW, Pchelintsev NA, Piscitello D, Stong N, Rai TS, McBryan T, Otte GL, Nixon C, Clark W, ... ... Berger SL, et al. Mapping H4K20me3 onto the chromatin landscape of senescent cells indicates a function in control of cell senescence and tumor suppression through preservation of genetic and epigenetic stability. Genome Biology. 17: 158. PMID 27457071 DOI: 10.1186/S13059-016-1017-X  0.398
2016 Mews P, Berger SL. Exploring the Dynamic Relationship Between Cellular Metabolism and Chromatin Structure Using SILAC-Mass Spec and ChIP-Sequencing. Methods in Enzymology. 574: 311-29. PMID 27423866 DOI: 10.1016/Bs.Mie.2016.04.002  0.382
2016 Monteith JA, Mellert H, Sammons MA, Kuswanto LA, Sykes SM, Resnick-Silverman L, Manfredi JJ, Berger SL, McMahon SB. A rare DNA contact mutation in cancer confers p53 gain-of-function and tumor cell survival via TNFAIP8 induction. Molecular Oncology. PMID 27341992 DOI: 10.1016/J.Molonc.2016.05.007  0.732
2016 Sammons MA, Zhu J, Berger SL. A Chromatin-Focused siRNA Screen for Regulators of p53-Dependent Transcription. G3 (Bethesda, Md.). PMID 27334938 DOI: 10.1534/G3.116.031534  0.796
2016 Luense LJ, Wang X, Schon SB, Weller AH, Lin Shiao E, Bryant JM, Bartolomei MS, Coutifaris C, Garcia BA, Berger SL. Comprehensive analysis of histone post-translational modifications in mouse and human male germ cells. Epigenetics & Chromatin. 9: 24. PMID 27330565 DOI: 10.1186/S13072-016-0072-6  0.792
2016 Capell BC, Drake AM, Zhu J, Shah PP, Dou Z, Dorsey J, Simola DF, Donahue G, Sammons M, Rai TS, Natale C, Ridky TW, Adams PD, Berger SL. MLL1 is essential for the senescence-associated secretory phenotype. Genes & Development. 30: 321-36. PMID 26833731 DOI: 10.1101/Gad.271882.115  0.764
2016 Simola DF, Graham RJ, Brady CM, Enzmann BL, Desplan C, Ray A, Zwiebel LJ, Bonasio R, Reinberg D, Liebig J, Berger SL. Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus. Science (New York, N.Y.). 351. PMID 26722000 DOI: 10.1126/Science.Aac6633  0.48
2016 Pauken KE, Sammons MA, Odorizzi PM, Manne SK, Godec J, Khan O, Sen D, Kurachi M, Barnitz RA, Bengsch B, Huang AC, Schenkel JM, Vahedi G, Haining WN, Berger SL, et al. Abstract B104: Impact of PD-1 blockade on epigenetic and transcriptional reprogramming of exhausted T cells Cancer Immunology Research. 4. DOI: 10.1158/2326-6066.Imm2016-B104  0.703
2016 Capell B, Berger S. 362 Epigenetic regulation of DNA damage-induced inflammation Journal of Investigative Dermatology. 136: S64. DOI: 10.1016/J.Jid.2016.02.395  0.344
2015 Dou Z, Ivanov A, Adams PD, Berger SL. Mammalian autophagy degrades nuclear constituents in response to tumorigenic stress. Autophagy. 0. PMID 26654219 DOI: 10.1080/15548627.2015.1127465  0.35
2015 Hu J, Donahue G, Dorsey J, Govin J, Yuan Z, Garcia BA, Shah PP, Berger SL. H4K44 Acetylation Facilitates Chromatin Accessibility during Meiosis. Cell Reports. PMID 26628362 DOI: 10.1016/J.Celrep.2015.10.070  0.501
2015 Dou Z, Xu C, Donahue G, Shimi T, Pan JA, Zhu J, Ivanov A, Capell BC, Drake AM, Shah PP, Catanzaro JM, Daniel Ricketts M, Lamark T, Adam SA, Marmorstein R, ... ... Berger SL, et al. Autophagy mediates degradation of nuclear lamina. Nature. 527: 105-9. PMID 26524528 DOI: 10.1038/Nature15548  0.319
2015 Berger SL, Sassone-Corsi P. Metabolic Signaling to Chromatin. Cold Spring Harbor Perspectives in Biology. PMID 26492570 DOI: 10.1101/Cshperspect.A019463  0.389
2015 Zhu J, Sammons MA, Donahue G, Dou Z, Vedadi M, Getlik M, Barsyte-Lovejoy D, Al-awar R, Katona BW, Shilatifard A, Huang J, Hua X, Arrowsmith CH, Berger SL. Gain-of-function p53 mutants co-opt chromatin pathways to drive cancer growth. Nature. 525: 206-11. PMID 26331536 DOI: 10.1038/Nature15251  0.757
2015 Dikovskaya D, Cole JJ, Mason SM, Nixon C, Karim SA, McGarry L, Clark W, Hewitt RN, Sammons MA, Zhu J, Athineos D, Leach JD, Marchesi F, van Tuyn J, Tait SW, ... ... Berger SL, et al. Mitotic Stress Is an Integral Part of the Oncogene-Induced Senescence Program that Promotes Multinucleation and Cell Cycle Arrest. Cell Reports. 12: 1483-96. PMID 26299965 DOI: 10.1016/J.Celrep.2015.07.055  0.751
2015 McNeal AS, Liu K, Nakhate V, Natale CA, Duperret EK, Capell BC, Dentchev T, Berger SL, Herlyn M, Seykora JT, Ridky TW. CDKN2B Loss Promotes Progression from Benign Melanocytic Nevus to Melanoma. Cancer Discovery. 5: 1072-85. PMID 26183406 DOI: 10.1158/2159-8290.Cd-15-0196  0.334
2015 Sen P, Dang W, Donahue G, Dai J, Dorsey J, Cao X, Liu W, Cao K, Perry R, Lee JY, Wasko BM, Carr DT, He C, Robison B, Wagner J, ... ... Berger SL, et al. H3K36 methylation promotes longevity by enhancing transcriptional fidelity. Genes & Development. 29: 1362-1376. PMID 26159996 DOI: 10.1101/Gad.263707.115  0.804
2015 Bryant JM, Donahue G, Wang X, Meyer-Ficca M, Luense LJ, Weller AH, Bartolomei MS, Blobel GA, Meyer RG, Garcia BA, Berger SL. Characterization of BRD4 during mammalian postmeiotic sperm development. Molecular and Cellular Biology. 35: 1433-48. PMID 25691659 DOI: 10.1128/Mcb.01328-14  0.541
2015 Sammons MA, Zhu J, Drake AM, Berger SL. TP53 engagement with the genome occurs in distinct local chromatin environments via pioneer factor activity. Genome Research. 25: 179-88. PMID 25391375 DOI: 10.1101/Gr.181883.114  0.777
2015 Qin J, Rajaratnam R, Feng L, Salami J, Barber-Rotenberg JS, Domsic J, Reyes-Uribe P, Liu H, Dang W, Berger SL, Villanueva J, Meggers E, Marmorstein R. Development of organometallic S6K1 inhibitors. Journal of Medicinal Chemistry. 58: 305-14. PMID 25356520 DOI: 10.1021/Jm5011868  0.666
2015 Yan H, Bonasio R, Simola DF, Liebig J, Berger SL, Reinberg D. DNA methylation in social insects: how epigenetics can control behavior and longevity. Annual Review of Entomology. 60: 435-52. PMID 25341091 DOI: 10.1146/Annurev-Ento-010814-020803  0.417
2015 McNeal A, Liu K, Nakhate V, Natale C, Capell B, Dentchev T, Berger S, Herlyn M, Seykora J, Ridky TW. Abstract 1239: CDKN2B loss promotes progression from benign melanocytic nevus to melanoma Cancer Research. 75: 1239-1239. DOI: 10.1158/1538-7445.Am2015-1239  0.356
2015 Long A, Zhu J, Giroux V, Berger SL, Rustgi AK, Nachamkin SI. 87: Mutant p53 Can Drive Cancer Initiation and Progression Through Gain-of-Function Properties American Journal of Clinical Pathology. 143. DOI: 10.1093/Ajcp/143.Suppl1.051  0.327
2015 Schon S, Luense L, Wang X, Donahue G, Garcia B, Bartolomei M, Berger S. A comprehensive assessment of histone modifications in human sperm Fertility and Sterility. 104: e296-e297. DOI: 10.1016/J.Fertnstert.2015.07.928  0.406
2015 Chen Q, Crowe EP, Kuhn T, Johnson JE, Gregory BD, Donahue G, Bonini NM, Berger SL, Sell C, Torres C, Brad Johnson F. Connections between cell senescence, chromatin, and neurodegeneration Experimental Gerontology. 68: 93-94. DOI: 10.1016/J.Exger.2015.01.011  0.398
2014 Kennedy BK, Berger SL, Brunet A, Campisi J, Cuervo AM, Epel ES, Franceschi C, Lithgow GJ, Morimoto RI, Pessin JE, Rando TA, Richardson A, Schadt EE, Wyss-Coray T, Sierra F. Geroscience: linking aging to chronic disease. Cell. 159: 709-13. PMID 25417146 DOI: 10.1016/J.Cell.2014.10.039  0.478
2014 Yan H, Simola DF, Bonasio R, Liebig J, Berger SL, Reinberg D. Eusocial insects as emerging models for behavioural epigenetics. Nature Reviews. Genetics. 15: 677-88. PMID 25200663 DOI: 10.1038/Nrg3787  0.388
2014 Mews P, Zee BM, Liu S, Donahue G, Garcia BA, Berger SL. Histone methylation has dynamics distinct from those of histone acetylation in cell cycle reentry from quiescence. Molecular and Cellular Biology. 34: 3968-80. PMID 25154414 DOI: 10.1128/Mcb.00763-14  0.5
2014 McCormick MA, Mason AG, Guyenet SJ, Dang W, Garza RM, Ting MK, Moller RM, Berger SL, Kaeberlein M, Pillus L, La Spada AR, Kennedy BK. The SAGA histone deubiquitinase module controls yeast replicative lifespan via Sir2 interaction. Cell Reports. 8: 477-86. PMID 25043177 DOI: 10.1016/J.Celrep.2014.06.037  0.787
2014 Brunet A, Berger SL. Epigenetics of aging and aging-related disease. The Journals of Gerontology. Series a, Biological Sciences and Medical Sciences. 69: S17-20. PMID 24833581 DOI: 10.1093/Gerona/Glu042  0.328
2014 Dang W, Sutphin GL, Dorsey JA, Otte GL, Cao K, Perry RM, Wanat JJ, Saviolaki D, Murakami CJ, Tsuchiyama S, Robison B, Gregory BD, Vermeulen M, Shiekhattar R, Johnson FB, ... ... Berger SL, et al. Inactivation of yeast Isw2 chromatin remodeling enzyme mimics longevity effect of calorie restriction via induction of genotoxic stress response. Cell Metabolism. 19: 952-66. PMID 24814484 DOI: 10.1016/J.Cmet.2014.04.004  0.767
2013 Cruickshanks HA, McBryan T, Nelson DM, Vanderkraats ND, Shah PP, van Tuyn J, Singh Rai T, Brock C, Donahue G, Dunican DS, Drotar ME, Meehan RR, Edwards JR, Berger SL, Adams PD. Senescent cells harbour features of the cancer epigenome. Nature Cell Biology. 15: 1495-506. PMID 24270890 DOI: 10.1038/Ncb2879  0.399
2013 Shah PP, Donahue G, Otte GL, Capell BC, Nelson DM, Cao K, Aggarwala V, Cruickshanks HA, Rai TS, McBryan T, Gregory BD, Adams PD, Berger SL. Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape. Genes & Development. 27: 1787-99. PMID 23934658 DOI: 10.1101/Gad.223834.113  0.505
2013 Ivanov A, Pawlikowski J, Manoharan I, van Tuyn J, Nelson DM, Rai TS, Shah PP, Hewitt G, Korolchuk VI, Passos JF, Wu H, Berger SL, Adams PD. Lysosome-mediated processing of chromatin in senescence. The Journal of Cell Biology. 202: 129-43. PMID 23816621 DOI: 10.1083/Jcb.201212110  0.464
2013 Capell BC, Berger SL. Genome-wide epigenetics. The Journal of Investigative Dermatology. 133: e9. PMID 23673507 DOI: 10.1038/Jid.2013.173  0.524
2013 Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, ... ... Berger SL, et al. Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality. Genome Research. 23: 1235-47. PMID 23636946 DOI: 10.1101/Gr.155408.113  0.373
2013 Sanchez-Macedo N, Feng J, Faubert B, Chang N, Elia A, Rushing EJ, Tsuchihara K, Bungard D, Berger SL, Jones RG, Mak TW, Zaugg K. Depletion of the novel p53-target gene carnitine palmitoyltransferase 1C delays tumor growth in the neurofibromatosis type I tumor model. Cell Death and Differentiation. 20: 659-68. PMID 23412344 DOI: 10.1038/Cdd.2012.168  0.327
2013 Simola DF, Ye C, Mutti NS, Dolezal K, Bonasio R, Liebig J, Reinberg D, Berger SL. A chromatin link to caste identity in the carpenter ant Camponotus floridanus. Genome Research. 23: 486-96. PMID 23212948 DOI: 10.1101/Gr.148361.112  0.475
2012 Bryant JM, Berger SL. Low-hanging fruit: targeting Brdt in the testes. The Embo Journal. 31: 3788-9. PMID 22960636 DOI: 10.1038/Emboj.2012.259  0.304
2012 Bonasio R, Li Q, Lian J, Mutti NS, Jin L, Zhao H, Zhang P, Wen P, Xiang H, Ding Y, Jin Z, Shen SS, Wang Z, Wang W, Wang J, ... Berger SL, et al. Genome-wide and caste-specific DNA methylomes of the ants Camponotus floridanus and Harpegnathos saltator. Current Biology : Cb. 22: 1755-64. PMID 22885060 DOI: 10.1016/J.Cub.2012.07.042  0.398
2012 Bryant JM, Govin J, Zhang L, Donahue G, Pugh BF, Berger SL. The linker histone plays a dual role during gametogenesis in Saccharomyces cerevisiae. Molecular and Cellular Biology. 32: 2771-83. PMID 22586276 DOI: 10.1128/Mcb.00282-12  0.531
2012 Mallory MJ, Law MJ, Sterner DE, Berger SL, Strich R. Gcn5p-dependent acetylation induces degradation of the meiotic transcriptional repressor Ume6p. Molecular Biology of the Cell. 23: 1609-17. PMID 22438583 DOI: 10.1091/Mbc.E11-06-0536  0.518
2012 Lu C, Ward PS, Kapoor GS, Rohle D, Turcan S, Abdel-Wahab O, Edwards CR, Khanin R, Figueroa ME, Melnick A, Wellen KE, O'Rourke DM, Berger SL, Chan TA, Levine RL, et al. IDH mutation impairs histone demethylation and results in a block to cell differentiation. Nature. 483: 474-8. PMID 22343901 DOI: 10.1038/Nature10860  0.682
2012 Berger SL. Transgenerational inheritance of longevity: epigenetic mysteries abound. Cell Metabolism. 15: 6-7. PMID 22225870 DOI: 10.1016/J.Cmet.2011.12.012  0.363
2012 Yuan H, Rossetto D, Mellert H, Dang W, Srinivasan M, Johnson J, Hodawadekar S, Ding EC, Speicher K, Abshiru N, Perry R, Wu J, Yang C, Zheng YG, Speicher DW, ... ... Berger SL, et al. MYST protein acetyltransferase activity requires active site lysine autoacetylation. The Embo Journal. 31: 58-70. PMID 22020126 DOI: 10.1038/Emboj.2011.382  0.718
2011 Shieh GS, Pan CH, Wu JH, Sun YJ, Wang CC, Hsiao WC, Lin CY, Tung L, Chang TH, Fleming AB, Hillyer C, Lo YC, Berger SL, Osley MA, Kao CF. H2B ubiquitylation is part of chromatin architecture that marks exon-intron structure in budding yeast. Bmc Genomics. 12: 627. PMID 22188810 DOI: 10.1186/1471-2164-12-627  0.475
2011 Edwards CR, Dang W, Berger SL. Histone H4 lysine 20 of Saccharomyces cerevisiae is monomethylated and functions in subtelomeric silencing. Biochemistry. 50: 10473-83. PMID 21985125 DOI: 10.1021/Bi201120Q  0.78
2011 Lu JY, Lin YY, Sheu JC, Wu JT, Lee FJ, Chen Y, Lin MI, Chiang FT, Tai TY, Berger SL, Zhao Y, Tsai KS, Zhu H, Chuang LM, Boeke JD. Acetylation of yeast AMPK controls intrinsic aging independently of caloric restriction. Cell. 146: 969-79. PMID 21906795 DOI: 10.1016/J.Cell.2011.07.044  0.43
2011 Zediak VP, Wherry EJ, Berger SL. The contribution of epigenetic memory to immunologic memory. Current Opinion in Genetics & Development. 21: 154-9. PMID 21330128 DOI: 10.1016/J.Gde.2011.01.016  0.301
2011 Trujillo KM, Tyler RK, Ye C, Berger SL, Osley MA. A genetic and molecular toolbox for analyzing histone ubiquitylation and sumoylation in yeast Methods. 54: 296-303. PMID 21310241 DOI: 10.1016/J.Ymeth.2011.02.003  0.533
2011 Zediak VP, Johnnidis JB, Wherry EJ, Berger SL. Cutting edge: persistently open chromatin at effector gene loci in resting memory CD8+ T cells independent of transcriptional status. Journal of Immunology (Baltimore, Md. : 1950). 186: 2705-9. PMID 21278341 DOI: 10.4049/Jimmunol.1003741  0.405
2010 Berger SL. Cell signaling and transcriptional regulation via histone phosphorylation Cold Spring Harbor Symposia On Quantitative Biology. 75: 23-26. PMID 21467136 DOI: 10.1101/Sqb.2010.75.044  0.486
2010 Yu Y, Zeng P, Xiong J, Liu Z, Berger SL, Merlino G. Epigenetic drugs can stimulate metastasis through enhanced expression of the pro-metastatic Ezrin gene. Plos One. 5: e12710. PMID 20856924 DOI: 10.1371/Journal.Pone.0012710  0.481
2010 Bonasio R, Zhang G, Ye C, Mutti NS, Fang X, Qin N, Donahue G, Yang P, Li Q, Li C, Zhang P, Huang Z, Berger SL, Reinberg D, Wang J, et al. Genomic comparison of the ants Camponotus floridanus and Harpegnathos saltator. Science (New York, N.Y.). 329: 1068-71. PMID 20798317 DOI: 10.1126/Science.1192428  0.43
2010 Govin J, Dorsey J, Gaucher J, Rousseaux S, Khochbin S, Berger SL. Systematic screen reveals new functional dynamics of histones H3 and H4 during gametogenesis. Genes & Development. 24: 1772-86. PMID 20713519 DOI: 10.1101/Gad.1954910  0.442
2010 Bungard D, Fuerth BJ, Zeng PY, Faubert B, Maas NL, Viollet B, Carling D, Thompson CB, Jones RG, Berger SL. Signaling kinase AMPK activates stress-promoted transcription via histone H2B phosphorylation. Science (New York, N.Y.). 329: 1201-5. PMID 20647423 DOI: 10.1126/Science.1191241  0.442
2010 Berger SL. Keeping p53 in check: a high-stakes balancing act. Cell. 142: 17-9. PMID 20603009 DOI: 10.1016/J.Cell.2010.06.026  0.304
2010 Govin J, Schug J, Krishnamoorthy T, Dorsey J, Khochbin S, Berger SL. Genome-wide mapping of histone H4 serine-1 phosphorylation during sporulation in Saccharomyces cerevisiae. Nucleic Acids Research. 38: 4599-606. PMID 20375100 DOI: 10.1093/Nar/Gkq218  0.478
2010 Placek BJ, Berger SL. Chromatin dynamics during herpes simplex virus-1 lytic infection. Biochimica Et Biophysica Acta. 1799: 223-7. PMID 20139038 DOI: 10.1016/J.Bbagrm.2010.01.012  0.4
2010 Huang J, Dorsey J, Chuikov S, Pérez-Burgos L, Zhang X, Jenuwein T, Reinberg D, Berger SL. G9a and Glp methylate lysine 373 in the tumor suppressor p53. The Journal of Biological Chemistry. 285: 9636-41. PMID 20118233 DOI: 10.1074/Jbc.M109.062588  0.348
2010 Kozak ML, Chavez A, Dang W, Berger SL, Ashok A, Guo X, Johnson FB. Inactivation of the Sas2 histone acetyltransferase delays senescence driven by telomere dysfunction. The Embo Journal. 29: 158-70. PMID 19875981 DOI: 10.1038/Emboj.2009.314  0.741
2009 Sanders BD, Jackson B, Brent M, Taylor AM, Dang W, Berger SL, Schreiber SL, Howitz K, Marmorstein R. Identification and characterization of novel sirtuin inhibitor scaffolds. Bioorganic & Medicinal Chemistry. 17: 7031-41. PMID 19734050 DOI: 10.1016/J.Bmc.2009.07.073  0.699
2009 Dang W, Steffen KK, Perry R, Dorsey JA, Johnson FB, Shilatifard A, Kaeberlein M, Kennedy BK, Berger SL. Histone H4 lysine 16 acetylation regulates cellular lifespan. Nature. 459: 802-7. PMID 19516333 DOI: 10.1038/Nature08085  0.816
2009 Govin J, Berger SL. Genome reprogramming during sporulation. The International Journal of Developmental Biology. 53: 425-32. PMID 19412896 DOI: 10.1387/Ijdb.082687Jg  0.388
2009 Berger SL, Kouzarides T, Shiekhattar R, Shilatifard A. An operational definition of epigenetics. Genes & Development. 23: 781-3. PMID 19339683 DOI: 10.1101/Gad.1787609  0.423
2009 Lin YY, Lu JY, Zhang J, Walter W, Dang W, Wan J, Tao SC, Qian J, Zhao Y, Boeke JD, Berger SL, Zhu H. Protein acetylation microarray reveals that NuA4 controls key metabolic target regulating gluconeogenesis. Cell. 136: 1073-84. PMID 19303850 DOI: 10.1016/J.Cell.2009.01.033  0.748
2009 Placek BJ, Huang J, Kent JR, Dorsey J, Rice L, Fraser NW, Berger SL. The histone variant H3.3 regulates gene expression during lytic infection with herpes simplex virus type 1. Journal of Virology. 83: 1416-21. PMID 19004946 DOI: 10.1128/Jvi.01276-08  0.385
2008 Berger SL. Out of the jaws of death: PRMT5 steers p53. Nature Cell Biology. 10: 1389-90. PMID 19043433 DOI: 10.1038/Ncb1208-1389  0.337
2008 Zediak VP, Berger SL. Hit and run: transient deubiquitylase activity in a chromatin-remodeling complex. Molecular Cell. 31: 773-4. PMID 18922460 DOI: 10.1016/J.Molcel.2008.09.005  0.343
2008 Shema E, Tirosh I, Aylon Y, Huang J, Ye C, Moskovits N, Raver-Shapira N, Minsky N, Pirngruber J, Tarcic G, Hublarova P, Moyal L, Gana-Weisz M, Shiloh Y, Yarden Y, ... ... Berger SL, et al. The histone H2B-specific ubiquitin ligase RNF20/hBRE1 acts as a putative tumor suppressor through selective regulation of gene expression. Genes & Development. 22: 2664-76. PMID 18832071 DOI: 10.1101/Gad.1703008  0.504
2008 Jones PA, Archer TK, Baylin SB, Beck S, Berger S, Bernstein BE, Carpten JD, Clark SJ, Costello JF, Doerge RW, Esteller M, Feinberg AP, Gingeras TR, Greally JM, Henikoff S, et al. Moving AHEAD with an international human epigenome project Nature. 454: 711-715. PMID 18685699 DOI: 10.1038/454711A  0.618
2008 Huang J, Berger SL. The emerging field of dynamic lysine methylation of non-histone proteins. Current Opinion in Genetics & Development. 18: 152-8. PMID 18339539 DOI: 10.1016/J.Gde.2008.01.012  0.464
2008 Walter W, Clynes D, Tang Y, Marmorstein R, Mellor J, Berger SL. 14-3-3 interaction with histone H3 involves a dual modification pattern of phosphoacetylation. Molecular and Cellular Biology. 28: 2840-9. PMID 18268010 DOI: 10.1128/Mcb.01457-07  0.515
2008 Zhang XY, Varthi M, Sykes SM, Phillips C, Warzecha C, Zhu W, Wyce A, Thorne AW, Berger SL, McMahon SB. The putative cancer stem cell marker USP22 is a subunit of the human SAGA complex required for activated transcription and cell-cycle progression. Molecular Cell. 29: 102-11. PMID 18206973 DOI: 10.1016/J.Molcel.2007.12.015  0.422
2007 Ingvarsdottir K, Edwards C, Lee MG, Lee JS, Schultz DC, Shilatifard A, Shiekhattar R, Berger SL. Histone H3 K4 demethylation during activation and attenuation of GAL1 transcription in Saccharomyces cerevisiae. Molecular and Cellular Biology. 27: 7856-64. PMID 17875926 DOI: 10.1128/Mcb.00801-07  0.827
2007 Huang J, Sengupta R, Espejo AB, Lee MG, Dorsey JA, Richter M, Opravil S, Shiekhattar R, Bedford MT, Jenuwein T, Berger SL. p53 is regulated by the lysine demethylase LSD1. Nature. 449: 105-8. PMID 17805299 DOI: 10.1038/Nature06092  0.492
2007 Wyce A, Xiao T, Whelan KA, Kosman C, Walter W, Eick D, Hughes TR, Krogan NJ, Strahl BD, Berger SL. H2B ubiquitylation acts as a barrier to Ctk1 nucleosomal recruitment prior to removal by Ubp8 within a SAGA-related complex. Molecular Cell. 27: 275-88. PMID 17643376 DOI: 10.1016/J.Molcel.2007.01.035  0.493
2007 Berger SL. The complex language of chromatin regulation during transcription. Nature. 447: 407-12. PMID 17522673 DOI: 10.1038/Nature05915  0.514
2007 Collins SR, Miller KM, Maas NL, Roguev A, Fillingham J, Chu CS, Schuldiner M, Gebbia M, Recht J, Shales M, Ding H, Xu H, Han J, Ingvarsdottir K, Cheng B, ... ... Berger SL, et al. Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map. Nature. 446: 806-10. PMID 17314980 DOI: 10.1038/Nature05649  0.801
2007 Chen Q, Lin L, Smith S, Huang J, Berger SL, Zhou J. CTCF-dependent chromatin boundary element between the latency-associated transcript and ICP0 promoters in the herpes simplex virus type 1 genome. Journal of Virology. 81: 5192-201. PMID 17267480 DOI: 10.1128/Jvi.02447-06  0.498
2006 Zeng PY, Vakoc CR, Chen ZC, Blobel GA, Berger SL. In vivo dual cross-linking for identification of indirect DNA-associated proteins by chromatin immunoprecipitation. Biotechniques. 41: 694, 696, 698. PMID 17191611 DOI: 10.2144/000112297  0.412
2006 Huang J, Perez-Burgos L, Placek BJ, Sengupta R, Richter M, Dorsey JA, Kubicek S, Opravil S, Jenuwein T, Berger SL. Repression of p53 activity by Smyd2-mediated methylation. Nature. 444: 629-32. PMID 17108971 DOI: 10.1038/Nature05287  0.436
2006 Zeng PY, Berger SL. LKB1 is recruited to the p21/WAF1 promoter by p53 to mediate transcriptional activation. Cancer Research. 66: 10701-8. PMID 17108107 DOI: 10.1158/0008-5472.Can-06-0999  0.366
2006 Krishnamoorthy T, Chen X, Govin J, Cheung WL, Dorsey J, Schindler K, Winter E, Allis CD, Guacci V, Khochbin S, Fuller MT, Berger SL. Phosphorylation of histone H4 Ser1 regulates sporulation in yeast and is conserved in fly and mouse spermatogenesis. Genes & Development. 20: 2580-92. PMID 16980586 DOI: 10.1101/Gad.1457006  0.408
2006 Vermeulen M, Walter W, Le Guezennec X, Kim J, Edayathumangalam RS, Lasonder E, Luger K, Roeder RG, Logie C, Berger SL, Stunnenberg HG. A feed-forward repression mechanism anchors the Sin3/histone deacetylase and N-CoR/SMRT corepressors on chromatin. Molecular and Cellular Biology. 26: 5226-36. PMID 16809761 DOI: 10.1128/Mcb.00440-06  0.502
2006 Huang J, Kent JR, Placek B, Whelan KA, Hollow CM, Zeng PY, Fraser NW, Berger SL. Trimethylation of histone H3 lysine 4 by Set1 in the lytic infection of human herpes simplex virus 1. Journal of Virology. 80: 5740-6. PMID 16731913 DOI: 10.1128/Jvi.00169-06  0.401
2006 Nathan D, Ingvarsdottir K, Sterner DE, Bylebyl GR, Dokmanovic M, Dorsey JA, Whelan KA, Krsmanovic M, Lane WS, Meluh PB, Johnson ES, Berger SL. Histone sumoylation is a negative regulator in Saccharomyces cerevisiae and shows dynamic interplay with positive-acting histone modifications. Genes & Development. 20: 966-76. PMID 16598039 DOI: 10.1101/Gad.1404206  0.842
2006 Emre NC, Berger SL. Histone post-translational modifications regulate transcription and silent chromatin in Saccharomyces cerevisiae. Ernst Schering Research Foundation Workshop. 127-53. PMID 16568953  0.834
2006 Sterner DE, Nathan D, Reindle A, Johnson ES, Berger SL. Sumoylation of the yeast Gcn5 protein. Biochemistry. 45: 1035-42. PMID 16411780 DOI: 10.1021/Bi051624Q  0.497
2005 Cheung WL, Turner FB, Krishnamoorthy T, Wolner B, Ahn SH, Foley M, Dorsey JA, Peterson CL, Berger SL, Allis CD. Phosphorylation of histone H4 serine 1 during DNA damage requires casein kinase II in S. cerevisiae. Current Biology : Cb. 15: 656-60. PMID 15823538 DOI: 10.1016/J.Cub.2005.02.049  0.402
2005 Emre NC, Ingvarsdottir K, Wyce A, Wood A, Krogan NJ, Henry KW, Li K, Marmorstein R, Greenblatt JF, Shilatifard A, Berger SL. Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing. Molecular Cell. 17: 585-94. PMID 15721261 DOI: 10.1016/J.Molcel.2005.01.007  0.819
2005 Lo WS, Gamache ER, Henry KW, Yang D, Pillus L, Berger SL. Histone H3 phosphorylation can promote TBP recruitment through distinct promoter-specific mechanisms. The Embo Journal. 24: 997-1008. PMID 15719021 DOI: 10.1038/Sj.Emboj.7600577  0.528
2005 Ingvarsdottir K, Krogan NJ, Emre NC, Wyce A, Thompson NJ, Emili A, Hughes TR, Greenblatt JF, Berger SL. H2B ubiquitin protease Ubp8 and Sgf11 constitute a discrete functional module within the Saccharomyces cerevisiae SAGA complex. Molecular and Cellular Biology. 25: 1162-72. PMID 15657441 DOI: 10.1128/Mcb.25.3.1162-1172.2005  0.821
2004 Emre NC, Berger SL. Histone H2B ubiquitylation and deubiquitylation in genomic regulation. Cold Spring Harbor Symposia On Quantitative Biology. 69: 289-99. PMID 16117661 DOI: 10.1101/Sqb.2004.69.289  0.806
2004 Kent JR, Zeng PY, Atanasiu D, Gardner J, Fraser NW, Berger SL. During lytic infection herpes simplex virus type 1 is associated with histones bearing modifications that correlate with active transcription Journal of Virology. 78: 10178-10186. PMID 15331750 DOI: 10.1128/Jvi.78.18.10178-10186.2004  0.399
2004 Wyce A, Henry KW, Berger SL. H2B ubiquitylation and de-ubiquitylation in gene activation. Novartis Foundation Symposium. 259: 63-73; discussion 73. PMID 15171247 DOI: 10.1002/0470862637.Ch5  0.553
2004 Lo WS, Henry KW, Schwartz MF, Berger SL. Histone modification patterns during gene activation. Methods in Enzymology. 377: 130-53. PMID 14979022 DOI: 10.1016/S0076-6879(03)77007-4  0.456
2004 Kao CF, Hillyer C, Tsukuda T, Henry K, Berger S, Osley MA. Rad6 plays a role in transcriptional activation through ubiquitylation of histone H2B. Genes & Development. 18: 184-95. PMID 14752010 DOI: 10.1101/Gad.1149604  0.555
2004 Hiroi H, Christenson LK, Chang L, Sammel MD, Berger SL, Strauss JF. Temporal and spatial changes in transcription factor binding and histone modifications at the steroidogenic acute regulatory protein (stAR) locus associated with stAR transcription. Molecular Endocrinology (Baltimore, Md.). 18: 791-806. PMID 14726488 DOI: 10.1210/Me.2003-0305  0.5
2003 Nathan D, Sterner DE, Berger SL. Histone modifications: Now summoning sumoylation. Proceedings of the National Academy of Sciences of the United States of America. 100: 13118-20. PMID 14597707 DOI: 10.1073/Pnas.2436173100  0.541
2003 Henry KW, Wyce A, Lo WS, Duggan LJ, Emre NC, Kao CF, Pillus L, Shilatifard A, Osley MA, Berger SL. Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. Genes & Development. 17: 2648-63. PMID 14563679 DOI: 10.1101/Gad.1144003  0.841
2003 Clements A, Poux AN, Lo WS, Pillus L, Berger SL, Marmorstein R. Structural basis for histone and phosphohistone binding by the GCN5 histone acetyltransferase. Molecular Cell. 12: 461-73. PMID 14536085 DOI: 10.1016/S1097-2765(03)00288-0  0.501
2003 Barlev NA, Emelyanov AV, Castagnino P, Zegerman P, Bannister AJ, Sepulveda MA, Robert F, Tora L, Kouzarides T, Birshtein BK, Berger SL. A novel human Ada2 homologue functions with Gcn5 or Brg1 to coactivate transcription. Molecular and Cellular Biology. 23: 6944-57. PMID 12972612 DOI: 10.1128/Mcb.23.19.6944-6957.2003  0.504
2003 Goo YH, Sohn YC, Kim DH, Kim SW, Kang MJ, Jung DJ, Kwak E, Barlev NA, Berger SL, Chow VT, Roeder RG, Azorsa DO, Meltzer PS, Suh PG, Song EJ, et al. Activating signal cointegrator 2 belongs to a novel steady-state complex that contains a subset of trithorax group proteins. Molecular and Cellular Biology. 23: 140-9. PMID 12482968 DOI: 10.1128/Mcb.23.1.140-149.2003  0.454
2003 Berger SL. A Coalescence of Scientific Cultures Science. 300: 252b-254. DOI: 10.1126/Science.1074216  0.45
2002 Daujat S, Bauer UM, Shah V, Turner B, Berger S, Kouzarides T. Crosstalk between CARM1 methylation and CBP acetylation on histone H3. Current Biology : Cb. 12: 2090-7. PMID 12498683 DOI: 10.1016/S0960-9822(02)01387-8  0.526
2002 Sterner DE, Belotserkovskaya R, Berger SL. SALSA, a variant of yeast SAGA, contains truncated Spt7, which correlates with activated transcription. Proceedings of the National Academy of Sciences of the United States of America. 99: 11622-7. PMID 12186975 DOI: 10.1073/Pnas.182021199  0.801
2002 Henry KW, Berger SL. Trans-tail histone modifications: wedge or bridge? Nature Structural Biology. 9: 565-6. PMID 12145643 DOI: 10.1038/Nsb0802-565  0.493
2002 Berger SL. Histone modifications in transcriptional regulation. Current Opinion in Genetics & Development. 12: 142-8. PMID 11893486 DOI: 10.1016/S0959-437X(02)00279-4  0.507
2002 Sterner DE, Wang X, Bloom MH, Simon GM, Berger SL. The SANT domain of Ada2 is required for normal acetylation of histones by the yeast SAGA complex. The Journal of Biological Chemistry. 277: 8178-86. PMID 11777910 DOI: 10.1074/Jbc.M108601200  0.477
2001 Barlev NA, Liu L, Chehab NH, Mansfield K, Harris KG, Halazonetis TD, Berger SL. Acetylation of p53 activates transcription through recruitment of coactivators/histone acetyltransferases Molecular Cell. 8: 1243-1254. PMID 11779500 DOI: 10.1016/S1097-2765(01)00414-2  0.458
2001 Tsavachidou D, Podrzucki W, Seykora J, Berger SL. Gene array analysis reveals changes in peripheral nervous system gene expression following stimuli that result in reactivation of latent herpes simplex virus type 1: Induction of transcription factor Bcl-3 Journal of Virology. 75: 9909-9917. PMID 11559823 DOI: 10.1128/Jvi.75.20.9909-9917.2001  0.393
2001 Berger SL, Felsenfeld G. Chromatin goes global. Molecular Cell. 8: 263-8. PMID 11545729 DOI: 10.1016/S1097-2765(01)00330-6  0.453
2001 Lo WS, Duggan L, Emre NC, Belotserkovskya R, Lane WS, Shiekhattar R, Berger SL. Snf1--a histone kinase that works in concert with the histone acetyltransferase Gcn5 to regulate transcription. Science (New York, N.Y.). 293: 1142-6. PMID 11498592 DOI: 10.1126/Science.1062322  0.826
2001 Marmorstein R, Berger SL. Structure and function of bromodomains in chromatin-regulating complexes. Gene. 272: 1-9. PMID 11470504 DOI: 10.1016/S0378-1119(01)00519-4  0.522
2001 Berger SL. An embarrassment of niches: The many covalent modifications of histones in transcriptional regulation Oncogene. 20: 3007-3013. PMID 11420715 DOI: 10.1038/Sj.Onc.1204324  0.51
2001 Berger SL. The histone modification circus Science. 292: 64-65. PMID 11294220 DOI: 10.1126/Science.1060791  0.489
2000 Yan Y, Barlev NA, Haley RH, Berger SL, Marmorstein R. Crystal structure of yeast Esa1 suggests a unified mechanism for catalysis and substrate binding by histone acetyltransferases. Molecular Cell. 6: 1195-205. PMID 11106757 DOI: 10.1016/S1097-2765(00)00116-7  0.416
2000 Berger SL. Gene regulation: Local or global? Nature. 408: 412-415. PMID 11100706 DOI: 10.1038/35044160  0.435
2000 Lo WS, Trievel RC, Rojas JR, Duggan L, Hsu JY, Allis CD, Marmorstein R, Berger SL. Phosphorylation of serine 10 in histone H3 is functionally linked in vitro and in vivo to Gcn5-mediated acetylation at lysine 14. Molecular Cell. 5: 917-26. PMID 10911986 DOI: 10.1016/S1097-2765(00)80257-9  0.485
2000 Sterner DE, Berger SL. Acetylation of histones and transcription-related factors Microbiology and Molecular Biology Reviews. 64: 435-459. PMID 10839822 DOI: 10.1128/Mmbr.64.2.435-459.2000  0.516
2000 Anafi M, Yang YF, Barlev NA, Govindan MV, Berger SL, Butt TR, Walfish PG. GCN5 and ADA adaptor proteins regulate triiodothyronine/GRIP1 and SRC-1 coactivator-dependent gene activation by the human thyroid hormone receptor. Molecular Endocrinology (Baltimore, Md.). 14: 718-32. PMID 10809234 DOI: 10.1210/Mend.14.5.0457  0.418
2000 Belotserkovskaya R, Sterner DE, Deng M, Sayre MH, Lieberman PM, Berger SL. Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters Molecular and Cellular Biology. 20: 634-647. PMID 10611242 DOI: 10.1128/Mcb.20.2.634-647.2000  0.799
2000 Rojas JR, Yan Y, Trievel RC, Clements A, Zhou J, Barlev N, Lo W, Sterner D, Wang L, Berger SL, Allis CD, Marmorstein R. Structure of the Histone Acetyltransferase Domains of the GCN5, P/CAF and ESA1 Transcriptional Coactivators Biochemical Society Transactions. 28: A106-A106. DOI: 10.1042/Bst028A106  0.437
1999 Grant PA, Berger SL, Workman JL. Identification and analysis of native nucleosomal histone acetyltransferase complexes. Methods in Molecular Biology (Clifton, N.J.). 119: 311-7. PMID 10804521 DOI: 10.1385/1-59259-681-9:311  0.447
1999 Belotserkovskaya R, Berger SL. Interplay between chromatin modifying and remodeling complexes in transcriptional regulation Critical Reviews in Eukaryotic Gene Expression. 9: 221-230. PMID 10651239 DOI: 10.1615/Critreveukargeneexpr.V9.I3-4.70  0.806
1999 Eberharter A, Sterner DE, Schieltz D, Hassan A, Yates JR, Berger SL, Workman JL. The ADA complex is a distinct histone acetyltransferase complex in Saccharomyces cerevisiae. Molecular and Cellular Biology. 19: 6621-31. PMID 10490601 DOI: 10.1128/Mcb.19.10.6621  0.36
1999 Rojas JR, Trievel RC, Zhou J, Mo Y, Li X, Berger SL, Allis CD, Marmorstein R. Structure of Tetrahymena GCN5 bound to coenzyme A and a histone H3 peptide. Nature. 401: 93-8. PMID 10485713 DOI: 10.1038/43487  0.49
1999 Massari ME, Grant PA, Pray-Grant MG, Berger SL, Workman JL, Murre C. A conserved motif present in a class of helix-loop-helix proteins activates transcription by direct recruitment of the SAGA complex. Molecular Cell. 4: 63-73. PMID 10445028 DOI: 10.1016/S1097-2765(00)80188-4  0.437
1999 Grant PA, Berger SL. Histone acetyltransferase complexes. Seminars in Cell & Developmental Biology. 10: 169-77. PMID 10441070 DOI: 10.1006/Scdb.1999.0298  0.51
1999 Trievel RC, Rojas JR, Sterner DE, Venkataramani RN, Wang L, Zhou J, Allis CD, Berger SL, Marmorstein R. Crystal structure and mechanism of histone acetylation of the yeast GCN5 transcriptional coactivator. Proceedings of the National Academy of Sciences of the United States of America. 96: 8931-6. PMID 10430873 DOI: 10.1073/Pnas.96.16.8931  0.466
1999 Berger SL. Gene activation by histone and factor acetyltransferases Current Opinion in Cell Biology. 11: 336-341. PMID 10395565 DOI: 10.1016/S0955-0674(99)80046-5  0.503
1999 Clements A, Rojas JR, Trievel RC, Wang L, Berger SL, Marmorstein R. Crystal structure of the histone acetyltransferase domain of the human PCAF transcriptional regulator bound to coenzyme A. The Embo Journal. 18: 3521-32. PMID 10393169 DOI: 10.1093/Emboj/18.13.3521  0.484
1999 Tanner KG, Trievel RC, Kuo MH, Howard RM, Berger SL, Allis CD, Marmorstein R, Denu JM. Catalytic mechanism and function of invariant glutamic acid 173 from the histone acetyltransferase GCN5 transcriptional coactivator. The Journal of Biological Chemistry. 274: 18157-60. PMID 10373413 DOI: 10.1074/jbc.274.26.18157  0.401
1999 Barlev NA, Workman JL, Berger SL. Analysis of activity and regulation of hGcn5, a human histone acetyltransferase. Methods in Enzymology. 304: 696-715. PMID 10372391 DOI: 10.1016/S0076-6879(99)04042-2  0.456
1999 Liu L, Scolnick DM, Trievel RC, Zhang HB, Marmorstein R, Halazonetis TD, Berger SL. p53 sites acetylated in vitro by PCAF and p300 are acetylated in vivo in response to DNA damage. Molecular and Cellular Biology. 19: 1202-9. PMID 9891054 DOI: 10.1128/Mcb.19.2.1202  0.37
1999 Sterner DE, Grant PA, Roberts SM, Duggan LJ, Belotserkovskaya R, Pacella LA, Winston F, Workman JL, Berger SL. Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction. Molecular and Cellular Biology. 19: 86-98. PMID 9858534 DOI: 10.1128/Mcb.19.1.86  0.803
1998 Grant PA, Sterner DE, Duggan LJ, Workman JL, Berger SL. The SAGA unfolds: convergence of transcription regulators in chromatin-modifying complexes. Trends in Cell Biology. 8: 193-7. PMID 9695838 DOI: 10.1016/S0962-8924(98)01263-X  0.516
1998 Gregory PD, Schmid A, Zavari M, Liu L, Berger SL, Hörz W. Absence of Gcn5 HAT activity defines a novel state in the opening of chromatin at the PHO5 promoter in yeast Molecular Cell. 1: 495-505. PMID 9660934 DOI: 10.1016/S1097-2765(00)80050-7  0.512
1998 Smith ER, Belote JM, Schiltz RL, Yang XJ, Moore PA, Berger SL, Nakatani Y, Allis CD. Cloning of Drosophila GCN5: conserved features among metazoan GCN5 family members. Nucleic Acids Research. 26: 2948-54. PMID 9611240 DOI: 10.1093/Nar/26.12.2948  0.405
1998 Jensen DE, Proctor M, Marquis ST, Gardner HP, Ha SI, Chodosh LA, Ishov AM, Tommerup N, Vissing H, Sekido Y, Minna J, Borodovsky A, Schultz DC, Wilkinson KD, Maul GG, ... ... Berger SL, et al. BAP1: a novel ubiquitin hydrolase which binds to the BRCA1 RING finger and enhances BRCA1-mediated cell growth suppression. Oncogene. 16: 1097-112. PMID 9528852 DOI: 10.1038/Sj.Onc.1201861  0.314
1998 Wang L, Liu L, Berger SL. Critical residues for histone acetylation by Gcn5, functioning in Ada and SAGA complexes, are also required for transcriptional function in vivo Genes and Development. 12: 640-653. PMID 9499400 DOI: 10.1101/Gad.12.5.640  0.539
1998 Barlev NA, Poltoratsky V, Owen-Hughes T, Ying C, Liu L, Workman JL, Berger SL. Repression of GCN5 histone acetyltransferase activity via bromodomain-mediated binding and phosphorylation by the Ku-DNA-dependent protein kinase complex. Molecular and Cellular Biology. 18: 1349-58. PMID 9488450 DOI: 10.1128/Mcb.18.3.1349  0.428
1998 Li R, Yu DS, Tanaka M, Zheng L, Berger SL, Stillman B. Activation of chromosomal DNA replication in Saccharomyces cerevisiae by acidic transcriptional activation domains Molecular and Cellular Biology. 18: 1296-1302. PMID 9488444 DOI: 10.1128/Mcb.18.3.1296  0.364
1998 Tal-Singer R, Podrzucki W, Lasner TM, Skokotas A, Leary JJ, Fraser NW, Berger SL. Use of differential display reverse transcription-PCR to reveal cellular changes during stimuli that result in herpes simplex virus type 1 reactivation from latency: Upregulation of immediate-early cellular response genes TIS7, interferon, and interferon regulatory factor-1 Journal of Virology. 72: 1252-1261. PMID 9445025 DOI: 10.1128/Jvi.72.2.1252-1261.1998  0.364
1997 Candau R, Scolnick DM, Darpino P, Ying CY, Halazonetis TD, Berger SL. Two tandem and independent sub-activation domains in the amino terminus of p53 require the adaptor complex for activity. Oncogene. 15: 807-16. PMID 9266967 DOI: 10.1038/Sj.Onc.1201244  0.413
1997 Grant PA, Duggan L, Côté J, Roberts SM, Brownell JE, Candau R, Ohba R, Owen-Hughes T, Allis CD, Winston F, Berger SL, Workman JL. Yeast Gcn5 functions in two multisubunit complexes to acetylate nucleosomal histones: characterization of an Ada complex and the SAGA (Spt/Ada) complex. Genes & Development. 11: 1640-50. PMID 9224714 DOI: 10.1101/Gad.11.13.1640  0.492
1997 Tal-Singer R, Lasner TM, Podrzucki W, Skokotas A, Leary JJ, Berger SL, Fraser NW. Gene expression during reactivation of herpes simplex virus type 1 from latency in the peripheral nervous system is different from that during lytic infection of tissue cultures Journal of Virology. 71: 5268-5276. PMID 9188595 DOI: 10.1128/Jvi.71.7.5268-5276.1997  0.318
1997 Candau R, Zhou J, Allis CD, Berger SL. Histone acetyltransferase activity and interaction with ADA2 are critical for GCN5 function in vivo Embo Journal. 16: 555-565. PMID 9034338 DOI: 10.1093/Emboj/16.3.555  0.458
1997 Wang L, Mizzen C, Ying C, Candau R, Barlev N, Brownell J, Allis CD, Berger SL. Histone acetyltransferase activity is conserved between yeast and human GCN5 and is required for complementation of growth and transcriptional activation Molecular and Cellular Biology. 17: 519-527. PMID 8972232 DOI: 10.1128/Mcb.17.1.519  0.515
1996 Mizzen CA, Yang XJ, Kokubo T, Brownell JE, Bannister AJ, Owen-Hughes T, Workman J, Wang L, Berger SL, Kouzarides T, Nakatani Y, Allis CD. The TAF(II)250 subunit of TFIID has histone acetyltransferase activity Cell. 87: 1261-1270. PMID 8980232 DOI: 10.1016/S0092-8674(00)81821-8  0.438
1996 Candau R, Berger SL. Structural and functional analysis of yeast putative adaptors: Evidence for an adaptor complex in vivo Journal of Biological Chemistry. 271: 5237-5245. PMID 8617808 DOI: 10.1074/Jbc.271.9.5237  0.333
1996 Candau R, Moore PA, Wang L, Barlev N, Ying CY, Rosen CA, Berger SL. Identification of human proteins functionally conserved with the yeast putative adaptors ADA2 and GCN5 Molecular and Cellular Biology. 16: 593-602. PMID 8552087 DOI: 10.1128/Mcb.16.2.593  0.384
1995 Barley NA, Candau R, Wang L, Darpino P, Silverman N, Berger SL. Characterization of physical interactions of the putative transcriptional adaptor, ADA2, with acidic activation domains and TATA-binding protein Journal of Biological Chemistry. 270: 19337-19344. PMID 7642611 DOI: 10.1074/Jbc.270.33.19337  0.37
1995 Wang L, Turcotte B, Guarente L, Berger SL. The acidic transcriptional activation domains of herpes virus VP16 and yeast HAP4 have different co-factor requirements Gene. 158: 163-170. PMID 7607537 DOI: 10.1016/0378-1119(95)00126-Q  0.572
1994 Berger SL, Meselson M. Production and cleavage of Drosophila hsp70 transcripts extending beyond the polyadenylation site Nucleic Acids Research. 22: 3218-3225. PMID 8065938 DOI: 10.1093/Nar/22.15.3218  0.65
1994 Marcus GA, Silverman N, Berger SL, Horiuchi J, Guarente L. Functional similarity and physical association between GCN5 and ADA2: Putative transcriptional adaptors Embo Journal. 13: 4807-4815. PMID 7957049 DOI: 10.1002/J.1460-2075.1994.Tb06806.X  0.609
1993 Piña B, Berger S, Marcus GA, Silverman N, Agapite J, Guarente L. ADA3: a gene, identified by resistance to GAL4-VP16, with properties similar to and different from those of ADA2. Molecular and Cellular Biology. 13: 5981-9. PMID 8413201 DOI: 10.1128/Mcb.13.10.5981  0.586
1992 Berger SL, Piña B, Silverman N, Marcus GA, Agapite J, Regier JL, Triezenberg SJ, Guarente L. Genetic isolation of ADA2: A potential transcriptional adaptor required for function of certain acidic activation domains Cell. 70: 251-265. PMID 1638630 DOI: 10.1016/0092-8674(92)90100-Q  0.57
1990 Berger SL, Cress WD, Cress A, Triezenberg SJ, Guarente L. Selective inhibition of activated but not basal transcription by the acidic activation domain of VP16: evidence for transcriptional adaptors. Cell. 61: 1199-208. PMID 2163758 DOI: 10.1016/0092-8674(90)90684-7  0.585
1987 Tang WJ, Berger SL, Triezenberg SJ, Folk WR. Nucleotides in the polyomavirus enhancer that control viral transcription and DNA replication. Molecular and Cellular Biology. 7: 1681-90. PMID 3037332 DOI: 10.1128/Mcb.7.5.1681  0.605
1985 Berger SL, Folk WR. Differential activation of RNA polymerase III-transcribed genes by the polyomavirus enhancer and the adenovirus E1A gene products. Nucleic Acids Research. 13: 1413-28. PMID 2987823 DOI: 10.1093/Nar/13.4.1413  0.617
Low-probability matches (unlikely to be authored by this person)
2020 Nativio R, Lan Y, Donahue G, Sidoli S, Berson A, Srinivasan AR, Shcherbakova O, Amlie-Wolf A, Nie J, Cui X, He C, Wang LS, Garcia BA, Trojanowski JQ, Bonini NM, ... Berger SL, et al. An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease. Nature Genetics. PMID 32989324 DOI: 10.1038/s41588-020-0696-0  0.298
2007 Allis CD, Berger SL, Cote J, Dent S, Jenuwien T, Kouzarides T, Pillus L, Reinberg D, Shi Y, Shiekhattar R, Shilatifard A, Workman J, Zhang Y. New nomenclature for chromatin-modifying enzymes. Cell. 131: 633-6. PMID 18022353 DOI: 10.1016/J.Cell.2007.10.039  0.296
2023 Baxter AE, Huang H, Giles JR, Chen Z, Wu JE, Drury S, Dalton K, Park SL, Torres L, Simone BW, Klapholz M, Ngiow SF, Freilich E, Manne S, Alcalde V, ... ... Berger SL, et al. The SWI/SNF chromatin remodeling complexes BAF and PBAF differentially regulate epigenetic transitions in exhausted CD8 T cells. Immunity. 56: 1320-1340.e10. PMID 37315535 DOI: 10.1016/j.immuni.2023.05.008  0.294
1997 Carter KC, Wang L, Shell BK, Zamir I, Berger SL, Moore PA. The human transcriptional adaptor genes TADA2L and GCN5L2 colocalize to chromosome 17q12-q21 and display a similar tissue expression pattern Genomics. 40: 497-500. PMID 9073520 DOI: 10.1006/Geno.1996.4605  0.292
2006 Nayak V, Zhao K, Wyce A, Schwartz MF, Lo WS, Berger SL, Marmorstein R. Structure and dimerization of the kinase domain from yeast Snf1, a member of the Snf1/AMPK protein family. Structure (London, England : 1993). 14: 477-85. PMID 16531232 DOI: 10.1016/J.Str.2005.12.008  0.288
2017 Yan H, Opachaloemphan C, Mancini G, Yang H, Gallitto M, Mlejnek J, Leibholz A, Haight K, Ghaninia M, Huo L, Perry M, Slone J, Zhou X, Traficante M, Penick CA, ... ... Berger SL, et al. An Engineered orco Mutation Produces Aberrant Social Behavior and Defective Neural Development in Ants. Cell. 170: 736-747.e9. PMID 28802043 DOI: 10.1016/J.Cell.2017.06.051  0.288
2011 Zaugg K, Yao Y, Reilly PT, Kannan K, Kiarash R, Mason J, Huang P, Sawyer SK, Fuerth B, Faubert B, Kalliomäki T, Elia A, Luo X, Nadeem V, Bungard D, ... ... Berger SL, et al. Carnitine palmitoyltransferase 1C promotes cell survival and tumor growth under conditions of metabolic stress. Genes & Development. 25: 1041-51. PMID 21576264 DOI: 10.1101/Gad.1987211  0.287
2024 Xu DC, Sas-Nowosielska H, Donahue G, Huang H, Pourshafie N, Good CR, Berger SL. Histone acetylation in an Alzheimer's disease cell model promotes homeostatic amyloid-reducing pathways. Acta Neuropathologica Communications. 12: 3. PMID 38167174 DOI: 10.1186/s40478-023-01696-6  0.287
2019 Khan O, Giles JR, McDonald S, Manne S, Ngiow SF, Patel KP, Werner MT, Huang AC, Alexander KA, Wu JE, Attanasio J, Yan P, George SM, Bengsch B, Staupe RP, ... ... Berger SL, et al. TOX transcriptionally and epigenetically programs CD8 T cell exhaustion. Nature. PMID 31207603 DOI: 10.1038/S41586-019-1325-X  0.283
2017 Slone JD, Pask GM, Ferguson ST, Millar JG, Berger SL, Reinberg D, Liebig J, Ray A, Zwiebel LJ. Functional characterization of odorant receptors in the ponerine ant, Harpegnathos saltator. Proceedings of the National Academy of Sciences of the United States of America. PMID 28696298 DOI: 10.1073/Pnas.1704647114  0.283
2012 Zhou X, Slone JD, Rokas A, Berger SL, Liebig J, Ray A, Reinberg D, Zwiebel LJ. Phylogenetic and transcriptomic analysis of chemosensory receptors in a pair of divergent ant species reveals sex-specific signatures of odor coding. Plos Genetics. 8: e1002930. PMID 22952454 DOI: 10.1371/Journal.Pgen.1002930  0.282
2013 Bryant JM, Meyer-Ficca ML, Dang VM, Berger SL, Meyer RG. Separation of spermatogenic cell types using STA-PUT velocity sedimentation. Journal of Visualized Experiments : Jove. PMID 24145866 DOI: 10.3791/50648  0.28
2020 Sheng L, Shields EJ, Gospocic J, Glastad KM, Ratchasanmuang P, Berger SL, Raj A, Little S, Bonasio R. Social reprogramming in ants induces longevity-associated glia remodeling. Science Advances. 6: eaba9869. PMID 32875108 DOI: 10.1126/Sciadv.Aba9869  0.279
2017 Gospocic J, Shields EJ, Glastad KM, Lin Y, Penick CA, Yan H, Mikheyev AS, Linksvayer TA, Garcia BA, Berger SL, Liebig J, Reinberg D, Bonasio R. The Neuropeptide Corazonin Controls Social Behavior and Caste Identity in Ants. Cell. 170: 748-759.e12. PMID 28802044 DOI: 10.1016/J.Cell.2017.07.014  0.278
2021 Alexander KA, Coté A, Nguyen SC, Zhang L, Gholamalamdari O, Agudelo-Garcia P, Lin-Shiao E, Tanim KMA, Lim J, Biddle N, Dunagin MC, Good CR, Mendoza MR, Little SC, Belmont A, ... ... Berger SL, et al. p53 mediates target gene association with nuclear speckles for amplified RNA expression. Molecular Cell. PMID 33823140 DOI: 10.1016/j.molcel.2021.03.006  0.274
2004 Zhou J, Berger SL. Good fences make good neighbors: barrier elements and genomic regulation. Molecular Cell. 16: 500-2. PMID 15546609 DOI: 10.1016/J.Molcel.2004.11.005  0.273
1995 Mol PC, Wang RH, Batey DW, Lee LA, Dang CV, Berger SL. Do products of the myc proto-oncogene play a role in transcriptional regulation of the prothymosin α gene? Molecular and Cellular Biology. 15: 6999-7009. PMID 8524267  0.271
2017 Pask GM, Slone JD, Millar JG, Das P, Moreira JA, Zhou X, Bello J, Berger SL, Bonasio R, Desplan C, Reinberg D, Liebig J, Zwiebel LJ, Ray A. Specialized odorant receptors in social insects that detect cuticular hydrocarbon cues and candidate pheromones. Nature Communications. 8: 297. PMID 28819196 DOI: 10.1038/S41467-017-00099-1  0.27
2015 Zhou X, Rokas A, Berger SL, Liebig J, Ray A, Zwiebel LJ. Chemoreceptor Evolution in Hymenoptera and Its Implications for the Evolution of Eusociality. Genome Biology and Evolution. 7: 2407-16. PMID 26272716 DOI: 10.1093/Gbe/Evv149  0.269
2020 Singh N, Lee YG, Shestova O, Ravikumar P, Hayer KE, Hong SJ, Lu XM, Pajarillo R, Agarwal S, Kuramitsu S, Orlando EJ, Mueller KT, Good CR, Berger SL, Shalem O, et al. Impaired death receptor signaling in leukemia causes antigen-independent resistance by inducing CAR T cell dysfunction. Cancer Discovery. PMID 32001516 DOI: 10.1158/2159-8290.Cd-19-0813  0.266
2018 Dou Z, Berger SL. Senescence Elicits Stemness: A Surprising Mechanism for Cancer Relapse. Cell Metabolism. 27: 710-711. PMID 29617638 DOI: 10.1016/J.Cmet.2018.03.009  0.265
2016 Mews P, Berger SL. Exploring the Dynamic Relationship Between Cellular Metabolism and Chromatin Structure Using SILAC-Mass Spec and ChIP-Sequencing Methods in Enzymology. DOI: 10.1016/bs.mie.2016.04.002  0.259
2022 Pingul BY, Huang H, Chen Q, Alikarami F, Zhang Z, Qi J, Bernt KM, Berger SL, Cao Z, Shi J. Dissection of the MEF2D-IRF8 transcriptional circuit dependency in acute myeloid leukemia. Iscience. 25: 105139. PMID 36193052 DOI: 10.1016/j.isci.2022.105139  0.259
2017 Bonini NM, Berger SL. The Sustained Impact of Model Organisms-in Genetics and Epigenetics. Genetics. 205: 1-4. PMID 28049700 DOI: 10.1534/Genetics.116.187864  0.258
1997 Scolnick DM, Chehab NH, Stavridi ES, Lien MC, Caruso L, Moran E, Berger SL, Halazonetis TD. CREB-binding protein and p300/CBP-associated factor are transcriptional coactivators of the p53 tumor suppressor protein. Cancer Research. 57: 3693-6. PMID 9288775  0.253
2015 Sharma KR, Enzmann BL, Schmidt Y, Moore D, Jones GR, Parker J, Berger SL, Reinberg D, Zwiebel LJ, Breit B, Liebig J, Ray A. Cuticular Hydrocarbon Pheromones for Social Behavior and Their Coding in the Ant Antenna. Cell Reports. 12: 1261-71. PMID 26279569 DOI: 10.1016/J.Celrep.2015.07.031  0.247
2022 Zhou Y, Petrovic J, Zhao J, Zhang W, Bigdeli A, Zhang Z, Berger SL, Pear WS, Faryabi RB. EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells. Molecular Cell. PMID 35182476 DOI: 10.1016/j.molcel.2022.01.015  0.24
2017 Ghaninia M, Haight K, Berger SL, Reinberg D, Zwiebel LJ, Ray A, Liebig J. Chemosensory sensitivity reflects reproductive status in the ant Harpegnathos saltator. Scientific Reports. 7: 3732. PMID 28623371 DOI: 10.1038/S41598-017-03964-7  0.239
1992 Manrow RE, Leone A, Krug MS, Eschenfeldt WH, Berger SL. The human prothymosin α gene family contains several processed pseudogenes lacking deleterious lesions Genomics. 13: 319-331. PMID 1612591 DOI: 10.1016/0888-7543(92)90248-Q  0.236
2018 Nativio R, Donahue G, Berson A, Lan Y, Amlie-Wolf A, Tuzer F, Toledo JB, Gosai SJ, Gregory BD, Torres C, Trojanowski JQ, Wang LS, Johnson FB, Bonini NM, Berger SL. Publisher Correction: Dysregulation of the epigenetic landscape of normal aging in Alzheimer's disease. Nature Neuroscience. PMID 29556027 DOI: 10.1038/S41593-018-0124-2  0.234
2015 Butin-Israeli V, Adam SA, Jain N, Otte GL, Neems D, Wiesmüller L, Berger SL, Goldman RD. Role of lamin b1 in chromatin instability. Molecular and Cellular Biology. 35: 884-98. PMID 25535332 DOI: 10.1128/Mcb.01145-14  0.231
2020 Wang L, Xu C, Johansen T, Berger SL, Dou Z. SIRT1 - a new mammalian substrate of nuclear autophagy. Autophagy. PMID 33292048 DOI: 10.1080/15548627.2020.1860541  0.225
2018 Ghaninia M, Berger SL, Reinberg D, Zwiebel LJ, Ray A, Liebig J. Antennal Olfactory Physiology and Behavior of Males of the Ponerine Ant Harpegnathos saltator. Journal of Chemical Ecology. PMID 30191433 DOI: 10.1007/S10886-018-1013-6  0.22
2024 Zhou M, Gamage ST, Tran KA, Bartee D, Wei X, Yin B, Berger S, Meier JL, Marmorstein R. Molecular Basis for RNA Cytidine Acetylation by NAT10. Biorxiv : the Preprint Server For Biology. PMID 38585770 DOI: 10.1101/2024.03.27.587050  0.219
2020 Xu C, Wang L, Fozouni P, Evjen G, Chandra V, Jiang J, Lu C, Nicastri M, Bretz C, Winkler JD, Amaravadi R, Garcia BA, Adams PD, Ott M, Tong W, ... ... Berger SL, et al. SIRT1 is downregulated by autophagy in senescence and ageing. Nature Cell Biology. PMID 32989246 DOI: 10.1038/s41556-020-00579-5  0.215
2024 Hao X, Zhao B, Towers M, Liao L, Monteiro EL, Xu X, Freeman C, Peng H, Tang HY, Havas A, Kossenkov AV, Berger SL, Adams PD, Speicher DW, Schultz D, et al. TXNRD1 drives the innate immune response in senescent cells with implications for age-associated inflammation. Nature Aging. PMID 38267705 DOI: 10.1038/s43587-023-00564-1  0.211
2021 Luense LJ, Berger SL. RNA modification to the rescue! Cell Host & Microbe. 29: 313-315. PMID 33705698 DOI: 10.1016/j.chom.2021.02.015  0.208
2001 Berger SL. Gene modification with hapaxoterministic restriction enzymes. Easing the way Methods in Molecular Biology (Clifton, N.J.). 160: 443-458. PMID 11265302  0.207
2023 Beltra JC, Abdel-Hakeem MS, Manne S, Zhang Z, Huang H, Kurachi M, Su L, Picton L, Ngiow SF, Muroyama Y, Casella V, Huang YJ, Giles JR, Mathew D, Belman J, ... ... Berger SL, et al. Stat5 opposes the transcription factor Tox and rewires exhausted CD8 T cells toward durable effector-like states during chronic antigen exposure. Immunity. 56: 2699-2718.e11. PMID 38091951 DOI: 10.1016/j.immuni.2023.11.005  0.205
2022 Hao X, Shiromoto Y, Sakurai M, Towers M, Zhang Q, Wu S, Havas A, Wang L, Berger S, Adams PD, Tian B, Nishikura K, Kossenkov AV, Liu P, Zhang R. ADAR1 downregulation by autophagy drives senescence independently of RNA editing by enhancing p16 levels. Nature Cell Biology. 24: 1202-1210. PMID 35851616 DOI: 10.1038/s41556-022-00959-z  0.199
2022 Rajurkar M, Parikh AR, Solovyov A, You E, Kulkarni AS, Chu C, Xu KH, Jaicks C, Taylor MS, Wu C, Alexander KA, Good CR, Szabolcs A, Gerstberger S, Tran AV, ... ... Berger SL, et al. Reverse Transcriptase Inhibition Disrupts Repeat Element Life Cycle in Colorectal Cancer. Cancer Discovery. PMID 35320348 DOI: 10.1158/2159-8290.CD-21-1117  0.188
2023 Jung IY, Bartoszek RL, Rech AJ, Collins SM, Ooi SK, Williams EF, Hopkins CR, Narayan V, Haas NB, Frey NV, Hexner EO, Siegel DL, Plesa G, Porter DL, Cantu A, ... ... Berger SL, et al. Type I Interferon Signaling via the EGR2 Transcriptional Regulator Potentiates CAR T cell-intrinsic Dysfunction. Cancer Discovery. PMID 37011008 DOI: 10.1158/2159-8290.CD-22-1175  0.185
2000 Trumbore MW, Berger SL. Prothymosin α is a nonspecific facilitator of nuclear processes: Studies of run-on transcription Protein Expression and Purification. 20: 414-420. PMID 11087681 DOI: 10.1006/prep.2000.1332  0.182
1993 Manrow RE, Berger SL. GAG Triplets as Splice Acceptors of Last Resort An Unusual Form of Alternative Splicing in Prothymosin α Pre-mRNA Journal of Molecular Biology. 234: 281-288. PMID 7901421 DOI: 10.1006/jmbi.1993.1583  0.181
2022 Jung IY, Narayan V, McDonald S, Rech AJ, Bartoszek R, Hong G, Davis MM, Xu J, Boesteanu AC, Barber-Rotenberg JS, Plesa G, Lacey SF, Jadlowsky JK, Siegel DL, Hammill DM, ... ... Berger SL, et al. BLIMP1 and NR4A3 transcription factors reciprocally regulate antitumor CAR T cell stemness and exhaustion. Science Translational Medicine. 14: eabn7336. PMID 36350986 DOI: 10.1126/scitranslmed.abn7336  0.176
2002 Zhou W, Cook RF, Cook SJ, Hammond SA, Rushlow K, Ghabrial NN, Berger SL, Montelaro RC, Issel CJ. Multiple RNA splicing and the presence of cryptic RNA splice donor and acceptor sites may contribute to low expression levels and poor immunogenicity of potential DNA vaccines containing the env gene of equine infectious anemia virus (EIAV). Veterinary Microbiology. 88: 127-51. PMID 12135633 DOI: 10.1016/S0378-1135(02)00099-8  0.175
1999 Tao L, Wang RH, Enkemann SA, Trumbore MW, Berger SL. Metabolic regulation of protein-bound glutamyl phosphates: Insights into the function of prothymosin α Journal of Cellular Physiology. 178: 154-163. PMID 10048579 DOI: 10.1002/(SICI)1097-4652(199902)178:2<154::AID-JCP4>3.0.CO;2-V  0.172
1997 Wang RH, Tao L, Trumbore MW, Berger SL. Turnover of the acyl phosphates α in vivo Journal of Biological Chemistry. 272: 26405-26412. PMID 9334215 DOI: 10.1074/jbc.272.42.26405  0.162
2014 Lin S, Wein S, Gonzales-Cope M, Otte GL, Yuan ZF, Afjehi-Sadat L, Maile T, Berger SL, Rush J, Lill JR, Arnott D, Garcia BA. Stable-isotope-labeled histone peptide library for histone post-translational modification and variant quantification by mass spectrometry. Molecular & Cellular Proteomics : McP. 13: 2450-66. PMID 25000943 DOI: 10.1074/mcp.O113.036459  0.162
2021 Chen Z, Arai E, Khan O, Zhang Z, Ngiow SF, He Y, Huang H, Manne S, Cao Z, Baxter AE, Cai Z, Freilich E, Ali MA, Giles JR, Wu JE, ... ... Berger SL, et al. In vivo CD8 T cell CRISPR screening reveals control by Fli1 in infection and cancer. Cell. PMID 33636129 DOI: 10.1016/j.cell.2021.02.019  0.156
2023 Jung IY, Noguera-Ortega E, Bartoszek R, Collins SM, Williams E, Davis M, Jadlowsky JK, Plesa G, Siegel DL, Chew A, Levine BL, Berger SL, Moon EK, Albelda SM, Fraietta JA. Tissue-resident memory CAR T cells with stem-like characteristics display enhanced efficacy against solid and liquid tumors. Cell Reports. Medicine. 101053. PMID 37224816 DOI: 10.1016/j.xcrm.2023.101053  0.154
2021 Gospocic J, Glastad KM, Sheng L, Shields EJ, Berger SL, Bonasio R. Kr-h1 maintains distinct caste-specific neurotranscriptomes in response to socially regulated hormones. Cell. 184: 5807-5823.e14. PMID 34739833 DOI: 10.1016/j.cell.2021.10.006  0.154
2023 Zhang Z, Baxter AE, Ren D, Qin K, Chen Z, Collins SM, Huang H, Komar CA, Bailer PF, Parker JB, Blobel GA, Kohli RM, Wherry EJ, Berger SL, Shi J. Efficient engineering of human and mouse primary cells using peptide-assisted genome editing. Nature Biotechnology. PMID 37095348 DOI: 10.1038/s41587-023-01756-1  0.149
1998 Trumbore MW, Manrow RE, Berger SL. Prothymosin α is not found in yeast Protein Expression and Purification. 13: 383-388. PMID 9693063 DOI: 10.1006/prep.1998.0909  0.148
2023 Collins SM, Alexander KA, Lundh S, Dimitri AJ, Zhang Z, Good CR, Fraietta JA, Berger SL. TOX2 coordinates with TET2 to positively regulate central memory differentiation in human CAR T cells. Science Advances. 9: eadh2605. PMID 37467321 DOI: 10.1126/sciadv.adh2605  0.148
1989 Eschenfeldt WH, Manrow RE, Krug M, Berger SL. Isolation and partial sequencing of the human prothymosin α gene family. Evidence against export of the gene products Journal of Biological Chemistry. 264: 7546-7555. PMID 2708378  0.148
1976 Cooper HL, Berger SL, Braverman R. Free ribosomes in physiologically nondividing cells. Human peripheral lymphocytes Journal of Biological Chemistry. 251: 4891-4900. PMID 956167  0.147
1989 Krug MS, Berger SL. Ribonuclease H activities associated with viral reverse transcriptase are endonucleases Proceedings of the National Academy of Sciences of the United States of America. 86: 3539-3543. PMID 2471188  0.146
1989 Leone A, Krug MS, Manrow RE, Berger SL. Mapping introns by exon excision Analytical Biochemistry. 183: 64-73. PMID 2559629 DOI: 10.1016/0003-2697(89)90172-3  0.143
2023 Sorek M, Berger SL. Neuromodulators and neuroepigenetics of social behavior in ants. Annals of the New York Academy of Sciences. PMID 37581481 DOI: 10.1111/nyas.15055  0.143
1991 Sburlati AR, Manrow RE, Berger SL. Prothymosin α antisense oligomers inhibit myeloma cell division Proceedings of the National Academy of Sciences of the United States of America. 88: 253-257. PMID 1986372 DOI: 10.1073/pnas.88.1.253  0.143
2000 Enkemann SA, Wang RH, Trumbore MW, Berger SL. Functional discontinuities in prothymosin α caused by caspase cleavage apoptotic cells Journal of Cellular Physiology. 182: 256-268. PMID 10623890 DOI: 10.1002/(SICI)1097-4652(200002)182:2<256::AID-JCP15>3.0.CO;2-N  0.142
2020 Nativio R, Lan Y, Donahue G, Sidoli S, Berson A, Srinivasan AR, Shcherbakova O, Amlie-Wolf A, Nie J, Cui X, He C, Wang LS, Garcia BA, Trojanowski JQ, Bonini NM, ... Berger SL, et al. Author Correction: An integrated multi-omics approach identifies epigenetic alterations associated with Alzheimer's disease. Nature Genetics. PMID 33033384 DOI: 10.1038/s41588-020-00733-7  0.141
1983 Berger SL, Wallace DM, Puskas RS, Eschenfeldt WH. Reverse transcriptase and its associated ribonuclease H: Interplay of two enzyme activities controls the yield of single-stranded complementary deoxyribonucleic acid Biochemistry. 22: 2365-2372. PMID 6190507  0.138
1990 Sburlati AR, Manrow RE, Berger SL. Human prothymosin α: Purification of a highly acidic nuclear protein by means of a phenol extraction Protein Expression and Purification. 1: 184-190. PMID 2136239 DOI: 10.1016/1046-5928(90)90014-P  0.137
2020 Sheng L, Shields EJ, Gospocic J, Glastad KM, Ratchasanmuang P, Berger SL, Raj A, Little S, Bonasio R. Social reprogramming in ants induces longevity-associated glia remodeling. Science Advances. 6. PMID 32937345 DOI: 10.1126/sciadv.aba9869  0.137
1999 Enkemann SA, Pavur KS, Ryazanov AG, Berger SL. Does prothymosin α affect the phosphorylation of elongation factor 2? Journal of Biological Chemistry. 274: 18644-18650. PMID 10373476 DOI: 10.1074/Jbc.274.26.18644  0.13
1986 Eschenfeldt WH, Berger SL. The human prothymosin α gene is polymorphic and induced upon growth stimulation: Evidence using a cloned cDNA Proceedings of the National Academy of Sciences of the United States of America. 83: 9404-9407. PMID 3467312  0.129
1997 Trumbore MW, Wang RH, Enkemann SA, Berger SL. Prothymosin α in vivo contains phosphorylated glutamic acid residues Journal of Biological Chemistry. 272: 26394-26404. PMID 9334214 DOI: 10.1074/jbc.272.42.26394  0.129
1993 Berger SL, Manrow RE, Lee HY. Phoenix mutagenesis: One-step reassembly of multiply cleaved plasmids with mixtures of mutant and wild-type fragments Analytical Biochemistry. 214: 571-579. PMID 7906495 DOI: 10.1006/abio.1993.1540  0.128
1991 Krug MS, Berger SL. Reverse transcriptase from human immunodeficiency virus: A single template-primer binding site serves two physically separable catalytic functions Biochemistry. 30: 10614-10623. PMID 1718423  0.122
2023 Glastad KM, Roessler J, Gospocic J, Bonasio R, Berger SL. Long ant life span is maintained by a unique heat shock factor. Genes & Development. 37: 398-417. PMID 37257919 DOI: 10.1101/gad.350250.122  0.121
1979 Berger SL, Birkenmeier CS. Metabolism of polyadenylated mRNA in growing human lymphocytes Bba Section Nucleic Acids and Protein Synthesis. 562: 80-91. PMID 312113 DOI: 10.1016/0005-2787(79)90128-X  0.119
2010 Huang J, Dorsey J, Chuikov S, Pérez-Burgos L, Zhang X, Jenuwein T, Reinberg D, Berger SL. G9a and Glp methylate lysine 373 in the tumor suppressor p53 (Journal of Biological Chemistry (2010) 285, (9636-9641) DOI: 10.1074/jbc.A109.062588) Journal of Biological Chemistry. 285: 18122.  0.118
1987 Berger SL. Isolation of cytoplasmic RNA: ribonucleoside - vanadyl complexes Methods in Enzymology. 152: 227-234. PMID 2443795 DOI: 10.1016/0076-6879(87)52024-9  0.116
2021 Good CR, Aznar MA, Kuramitsu S, Samareh P, Agarwal S, Donahue G, Ishiyama K, Wellhausen N, Rennels AK, Ma Y, Tian L, Guedan S, Alexander KA, Zhang Z, Rommel PC, ... ... Berger SL, et al. An NK-like CAR T cell transition in CAR T cell dysfunction. Cell. PMID 34861191 DOI: 10.1016/j.cell.2021.11.016  0.116
1994 Berger SL. Prostective: Expanding the potential of restriction endonucleases: Use of hapaxoterministic enzymes Analytical Biochemistry. 222: 1-8. PMID 7856834 DOI: 10.1006/abio.1994.1445  0.115
1975 Berger SL, Cooper HL. Very short lived and stable mRNAs from resting human lymphocytes Proceedings of the National Academy of Sciences of the United States of America. 72: 3873-3877. PMID 1060069  0.114
1979 Berger SL, Birkenmeier CS. Inhibition of intractable nucleases with ribonucleoside-vanadyl complexes: Isolation of messenger ribonucleic acid from resting lymphocytes Biochemistry. 18: 5143-5149. PMID 497174  0.113
1993 Sburlati AR, De La Rosa A, Batey DW, Kurys GL, Manrow RE, Pannell LK, Martin BM, Sheeley DM, Berger SL. Phosphorylation of human and bovine prothymosin α in vivo Biochemistry. 32: 4587-4596.  0.108
1991 Manrow RE, Sburlati AR, Hanover JA, Berger SL. Nuclear targeting of prothymosin α Journal of Biological Chemistry. 266: 3916-3924. PMID 1899869  0.104
1982 Siegal GP, Thorgeirsson UP, Russo RG, Wallace DM, Liotta LA, Berger SL. Interferon enhancement of the invasive capacity of Ewing sarcoma cells in vitro Proceedings of the National Academy of Sciences of the United States of America. 79: 4064-4068. PMID 6180434 DOI: 10.1073/pnas.79.13.4064  0.102
2000 Enkemann SA, Ward RD, Berger SL. Mobility within the nucleus and neighboring cytosol is a key feature of prothymosin-alpha. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 48: 1341-55. PMID 10990488  0.1
1982 Berger SL, Liotta LA, Thorgeirsson UP, Siegal GP. Enhancement of human cancer cell invasiveness by human interferons Federation Proceedings. 41.  0.1
1987 Eschenfeldt WH, Puskas RS, Berger SL. [37] Hornopolymeric tailing Methods in Enzymology. 152: 337-342. PMID 3309564 DOI: 10.1016/0076-6879(87)52040-7  0.099
1981 Wallace DM, Hitchcock MJM, Reber SB, Berger SL. Translation of human immune interferon messenger RNA in Xenopus laevis oocytes Biochemical and Biophysical Research Communications. 100: 865-871. PMID 6168263 DOI: 10.1016/S0006-291X(81)80253-7  0.098
1982 Gray PW, Leung DW, Pennica D, Yelverton E, Najarian R, Simonsen CC, Derynck R, Sherwood PJ, Wallace DM, Berger SL, Levinson AD, Goeddel DV. Expression of human immune interferon cDNA in E. coli and monkey cells. Nature. 295: 503-8. PMID 6173769 DOI: 10.1038/295503A0  0.096
1998 Cook RF, Leroux C, Cook SJ, Berger SL, Lichtenstein DL, Ghabrial NN, Montelaro RC, Issel CJ. Development and characterization of an in vivo pathogenic molecular clone of equine infectious anemia virus. Journal of Virology. 72: 1383-93. PMID 9445039 DOI: 10.1128/Jvi.72.2.1383-1393.1998  0.094
1993 Sburlati AR, De La Rosa A, Batey DW, Kurys GL, Manrow RE, Pannell LK, Martin BM, Sheeley DM, Berger SL. Phosphorylation of human and bovine prothymosin alpha in vivo. Biochemistry. 32: 4587-96. PMID 8485135 DOI: 10.1021/bi00068a015  0.089
1979 Berger SL, Birkenmeier CS. Isolation of intact RNA using ribonucleoside-vanadyl complexes as ribonuclease inhibitors Federation Proceedings. 38.  0.084
1995 Cook RF, Berger SL, Rushlow KE, McManus JM, Cook SJ, Harrold S, Raabe ML, Montelaro RC, Issel CJ. Enhanced sensitivity to neutralizing antibodies in a variant of equine infectious anemia virus is linked to amino acid substitutions in the surface unit envelope glycoprotein. Journal of Virology. 69: 1493-9. PMID 7853482 DOI: 10.1128/Jvi.69.3.1493-1499.1995  0.082
1979 Berger SL. [42] Lymphocytes as resting cells Methods in Enzymology. 58: 486-494. PMID 423786 DOI: 10.1016/S0076-6879(79)58163-4  0.082
2003 Cook RF, Cook SJ, Berger SL, Leroux C, Ghabrial NN, Gantz M, Bolin PS, Mousel MR, Montelaro RC, Issel CJ. Enhancement of equine infectious anemia virus virulence by identification and removal of suboptimal nucleotides. Virology. 313: 588-603. PMID 12954224 DOI: 10.1016/S0042-6822(03)00351-9  0.08
1981 Assaad F, Allen G, Berger SL. Report on a workshop on DNA recombinant technology in interferon cloning Journal of Infectious Diseases. 143: 297-300.  0.08
1994 Berger SL. Rescue of a failed polymerase chain reaction catalyzed by vent or deep vent DNA polymerase with 10% dimethyl sulfoxide Analytical Biochemistry. 222: 290-293. PMID 7856867 DOI: 10.1006/abio.1994.1490  0.077
1982 Puskas RS, Manley NR, Wallace DM, Berger SL. Effect of ribonucleoside-vanadyl complexes on enzyme-catalyzed reactions central to recombinant deoxyribonucleic acid technology. Biochemistry. 21: 4602-8. PMID 6182903  0.069
1981 Berger SL, Wallace DM, Siegal GP, Hitchcock MJM, Birkenmeier CS, Reber SB. [9] Preparation of interferon messenger RNAs with the use of ribonucleoside-vanadyl complexes Methods in Enzymology. 79: 59-68. PMID 6173717 DOI: 10.1016/S0076-6879(81)79013-X  0.064
1980 Berger SL, Hitchcock MJ, Zoon KC, Birkenmeier CS, Friedman RM, Chang EH. Characterization of interferon messenger RNA synthesis in Namalva cells. The Journal of Biological Chemistry. 255: 2955-61. PMID 7358718  0.063
1987 Wahl GM, Berger SL. [45] Screening colonies or plaques with radioactive nucleic acid probes Methods in Enzymology. 152: 415-423. PMID 2958681 DOI: 10.1016/0076-6879(87)52048-1  0.062
1987 Berger SL. Quantifying 32P-labeled and unlabeled nucleic acids Methods in Enzymology. 152: 49-54. PMID 2443805  0.057
1987 Wahl GM, Berger SL, Kimmel AR. Molecular hybridization of immobilized nucleic acids: Theoretical concepts and practical considerations Methods in Enzymology. 152: 399-407. PMID 2443802 DOI: 10.1016/0076-6879(87)52046-8  0.055
1978 Berger SL, Cooper HL. The relationship between hnRNA+-poly(A) and mRNA+-poly(A) in non-dividing human lymphocytes Evidence for distinct synthetic pathways for mRNA precursor- and nonprecursor-hnRNA Bba Section Nucleic Acids and Protein Synthesis. 517: 84-98. PMID 623765 DOI: 10.1016/0005-2787(78)90036-9  0.054
1984 Berger SL. The use of Cerenkov radiation for monitoring reactions performed in minute volumes: Examples from recombinant DNA technology Analytical Biochemistry. 136: 515-519. PMID 6721149 DOI: 10.1016/0003-2697(84)90254-9  0.053
1979 Berger SL. Alternatives to the anonymous referee Trends in Biochemical Sciences. 4.  0.047
1989 Berger SL. Nuclease digestion: A method for mapping introns Methods in Enzymology. 180: 325-334. PMID 2482422 DOI: 10.1016/0076-6879(89)80109-0  0.047
1987 Berger SL. Direct mapping of rare messenger RNAs by means of oligomer-directed ribonuclease H cleavage Analytical Biochemistry. 161: 272-279. PMID 3034098 DOI: 10.1016/0003-2697(87)90451-9  0.046
1995 Berger SL, Scagliotti RH, Lund EM. A quantitative study of the effects of Tribrissen on canine tear production. Journal of the American Animal Hospital Association. 31: 236-41. PMID 7634058 DOI: 10.5326/15473317-31-3-236  0.043
1998 Berger SL, King VL. The Fluctuation of Tear Production in the Dog Journal of the American Animal Hospital Association. 34: 79-83. PMID 9527434  0.043
1986 Krug MS, Berger SL. A micromethod for measuring the molar concentration of polyadenylated RNA in the presence of ribosomal RNA Analytical Biochemistry. 153: 315-323. PMID 2422979 DOI: 10.1016/0003-2697(86)90098-9  0.043
1984 Berger SL. The use of Cerenkov radiation for monitoring reactions performed in minute volumes: Examples from recombination DNA technology Federation Proceedings. 43.  0.042
1987 Berger SL. [19] Preparation and characterization of RNA: Overview Methods in Enzymology. 152: 215-219. PMID 2443793 DOI: 10.1016/0076-6879(87)52022-5  0.041
2015 Sharma KR, Enzmann BL, Schmidt Y, Moore D, Jones GR, Parker J, Berger SL, Reinberg D, Zwiebel LJ, Breit B, Liebig J, Ray A. Cuticular Hydrocarbon Pheromones for Social Behavior and Their Coding in the Ant Antenna Cell Reports. 12: 1261-1271. DOI: 10.1016/j.celrep.2015.07.031  0.039
1985 Berger SL, Krug MS. A simple method for quantifying 32P in submicroliter samples Biotechniques. 3: 38-46.  0.038
1991 Berger SL, Palmer RH, Hodges CC, Hall DG. Neurologic manifestations of trypanosomiasis in a dog Journal of the American Veterinary Medical Association. 198: 132-134. PMID 1899857  0.034
1975 Berger SL. Diethyl pyrocarbonate: An examination of its properties in buffered solutions with a new assay technique Analytical Biochemistry. 67: 428-437. PMID 1163766 DOI: 10.1016/0003-2697(75)90315-2  0.031
1989 Berger SL, Chirgwin JM. Isolation of RNA Methods in Enzymology. 180: 3-13. PMID 2482420 DOI: 10.1016/0076-6879(89)80087-4  0.03
2023 Berger SL. Terri Grodzicker: advocate and influencer of impactful science. Genes & Development. 37: 13. PMID 37061967 DOI: 10.1101/gad.350526.123  0.029
1987 Krug MS, Berger SL. [26] Determination of the molar concentration of messenger RNA Methods in Enzymology. 152: 262-266. PMID 2821355 DOI: 10.1016/0076-6879(87)52029-8  0.029
1987 Eschenfeldt WH, Berger SL. [36] Purification of large double-stranded cDNA fragments Methods in Enzymology. 152: 335-337. PMID 3657579 DOI: 10.1016/0076-6879(87)52039-0  0.028
1995 Berger SL. Volume 222, Number 1 (1994), in the article "Expanding the Potential of Restriction Endonucleases," by S. L. Berger, pages 1-8 Analytical Biochemistry. 225: 195. DOI: 10.1006/abio.1995.1143  0.017
1959 WILSON DK, GINOTT HG, BERGER SL. Group interview: initial parental clinic contact The Journal of Speech and Hearing Disorders. 24: 282-284. PMID 13673453  0.015
1987 Krug MS, Berger SL. [33] First-strand cDNA synthesis primed with oligo(dT) Methods in Enzymology. 152: 316-325. PMID 2443800 DOI: 10.1016/0076-6879(87)52036-5  0.013
2007 Berger SL, Berger AM. Nausea/Vomiting, Anorexia/Cachexia, and Fatigue Palliative Care. 115-132. DOI: 10.1016/B978-141602597-9.10008-0  0.01
1987 Kimmel AR, Berger SL. [32] Preparation of cDNA and the generation of cDNA libraries: Overview Methods in Enzymology. 152: 307-316. PMID 3657577 DOI: 10.1016/0076-6879(87)52035-3  0.01
1987 Berger SL, Kimmel AR. Preface Methods in Enzymology. 152. DOI: 10.1016/0076-6879(87)52001-8  0.01
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