Year |
Citation |
Score |
2020 |
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, ... ... Shaffer CA, et al. SBML Level 3: an extensible format for the exchange and reuse of biological models. Molecular Systems Biology. 16: e9110. PMID 32845085 DOI: 10.15252/Msb.20199110 |
0.391 |
|
2020 |
Bart AC, Tibau J, Kafura D, Shaffer CA, Tilevich E. Design and Evaluation of a Block-based Environment with a Data Science Context Ieee Transactions On Emerging Topics in Computing. 8: 182-192. DOI: 10.1109/Tetc.2017.2729585 |
0.716 |
|
2019 |
Palmisano A, Hoops S, Watson LT, Jones TC, Tyson JJ, Shaffer CA. Efficiently Encoding Complex Biochemical Models with the Multistate Model Builder (MSMB). Methods in Molecular Biology (Clifton, N.J.). 1945: 119-139. PMID 30945244 DOI: 10.1007/978-1-4939-9102-0_5 |
0.351 |
|
2019 |
Manzoor H, Akhuseyinoglu K, Wonderly J, Brusilovsky P, Shaffer CA. Crossing the Borders: Re-Use of Smart Learning Objects in Advanced Content Access Systems Future Internet. 11: 160. DOI: 10.3390/Fi11070160 |
0.331 |
|
2018 |
Koh KH, Fouh E, Farghally MF, Shahin H, Shaffer CA. Experience Journal of Data and Information Quality. 9: 1-10. DOI: 10.1145/3148240 |
0.325 |
|
2017 |
Chen M, Amos B, Watson LT, Tyson J, Cao Y, Shaffer C, Trosset M, Oguz C, Kakoti G. Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 29990127 DOI: 10.1109/Tcbb.2017.2773083 |
0.317 |
|
2017 |
Bart AC, Tibau J, Tilevich E, Shaffer CA, Kafura D. BlockPy: An Open Access Data-Science Environment for Introductory Programmers Computer. 50: 18-26. DOI: 10.1109/Mc.2017.132 |
0.698 |
|
2016 |
Karavirta V, Shaffer CA. Creating Engaging Online Learning Material with the JSAV JavaScript Algorithm Visualization Library Ieee Transactions On Learning Technologies. 9: 171-183. DOI: 10.1109/Tlt.2015.2490673 |
0.355 |
|
2015 |
Palmisano A, Hoops S, Watson LT, Jones TC, Tyson JJ, Shaffer CA. JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations. Bmc Systems Biology. 9: 95. PMID 26704692 DOI: 10.1186/S12918-015-0237-0 |
0.366 |
|
2015 |
Ahn TH, Sandu A, Watson LT, Shaffer CA, Cao Y, Baumann WT. A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations International Journal of Parallel Programming. 43: 597-630. DOI: 10.1007/S10766-014-0309-6 |
0.31 |
|
2014 |
Palmisano A, Hoops S, Watson LT, Jones TC, Tyson JJ, Shaffer CA. Multistate Model Builder (MSMB): a flexible editor for compact biochemical models. Bmc Systems Biology. 8: 42. PMID 24708852 DOI: 10.1186/1752-0509-8-42 |
0.351 |
|
2014 |
Shaffer CA. Grand Challenges in Digital Education Frontiers in Ict. 1. DOI: 10.3389/Fict.2014.00005 |
0.305 |
|
2014 |
Akbar M, Shaffer CA, Fan W, Fox EA. Recommendation based on Deduced Social Networks in an educational digital library Proceedings of the Acm/Ieee Joint Conference On Digital Libraries. 29-38. DOI: 10.1109/JCDL.2014.6970147 |
0.496 |
|
2014 |
Cooper ML, Shaffer CA, Edwards SH, Ponce SP. Open source software and the algorithm visualization community Science of Computer Programming. 88: 82-91. DOI: 10.1016/J.Scico.2013.12.008 |
0.319 |
|
2014 |
Fouh E, Karavirta V, Breakiron DA, Hamouda S, Hall S, Naps TL, Shaffer CA. Design and architecture of an interactive eTextbook - The OpenDSA system Science of Computer Programming. 88: 22-40. DOI: 10.1016/J.Scico.2013.11.040 |
0.354 |
|
2013 |
Verstak A, Ramakrishnan N, Watson LT, He J, Shaffer CA, Grama AY. Using hierarchical data mining to characterize performance of wireless system configurations Advances in Engineering Software. 65: 66-77. DOI: 10.1016/J.Advengsoft.2013.05.012 |
0.312 |
|
2012 |
Liu Z, Pu Y, Li F, Shaffer CA, Hoops S, Tyson JJ, Cao Y. Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle. The Journal of Chemical Physics. 136: 034105. PMID 22280742 DOI: 10.1063/1.3677190 |
0.318 |
|
2012 |
Akbar M, Shaffer CA, Fox EA. Deduced social networks for an educational digital library Proceedings of the Acm/Ieee Joint Conference On Digital Libraries. 43-46. DOI: 10.1145/2232817.2232828 |
0.491 |
|
2012 |
Fouh E, Akbar M, Shaffer CA. The Role of Visualization in Computer Science Education Computers in the Schools. 29: 95-117. DOI: 10.1080/07380569.2012.651422 |
0.559 |
|
2011 |
Akbar M, Fan W, Cassel L, Delcambre L, Shaffer CA, Fox EA, Chen Y. How educators find educational resources online Iticse'11 - Proceedings of the 16th Annual Conference On Innovation and Technology in Computer Science. 367. DOI: 10.1145/1999747.1999880 |
0.472 |
|
2011 |
Shaffer CA, Akbar M, Alon AJD, Stewart M, Edwards SH. Getting algorithm visualizations into the classroom Sigcse'11 - Proceedings of the 42nd Acm Technical Symposium On Computer Science Education. 129-134. DOI: 10.1145/1953163.1953204 |
0.462 |
|
2011 |
Akbar M, Fan W, Shaffer CA, Chen Y, Cassel L, Delcambre L, Garcia DD, Hislop GW, Shipman F, Furuta R, Carpenter BS, Hsieh H, Siegfried B, Fox EA. Digital library 2.0 for educational resources Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6966: 89-100. DOI: 10.1007/978-3-642-24469-8_11 |
0.487 |
|
2010 |
Randhawa R, Shaffer CA, Tyson JJ. Model composition for macromolecular regulatory networks. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 278-87. PMID 20431147 DOI: 10.1109/Tcbb.2008.64 |
0.625 |
|
2010 |
Shaffer CA, Cooper ML, Alon AJD, Akbar M, Stewart M, Ponce S, Edwards SH. Algorithm Visualization: The state of the field Acm Transactions On Computing Education. 10. DOI: 10.1145/1821996.1821997 |
0.548 |
|
2010 |
Fox EA, Chen Y, Akbar M, Shaffer CA, Edwards SH, Brusilovsky P, Garcia D, Delcambre L, Decker F, Archer D, Furuta R, Shipman F, Carpenter S, Cassel L. Ensemble PDP-8: Eight principles for distributed portals Proceedings of the Acm International Conference On Digital Libraries. 341-344. DOI: 10.1145/1816123.1816174 |
0.432 |
|
2009 |
Randhawa R, Shaffer CA, Tyson JJ. Model aggregation: a building-block approach to creating large macromolecular regulatory networks. Bioinformatics (Oxford, England). 25: 3289-95. PMID 19880372 DOI: 10.1093/Bioinformatics/Btp581 |
0.628 |
|
2009 |
Shaffer CA, Zwolak JW, Randhawa R, Tyson JJ. Modeling molecular regulatory networks with JigCell and PET. Methods in Molecular Biology (Clifton, N.J.). 500: 81-111. PMID 19399431 DOI: 10.1007/978-1-59745-525-1_4 |
0.62 |
|
2009 |
Ahn TH, Watso LT, Cao Y, Shaffer CA, Baumann WT. Cell cycle modeling for budding yeast with stochastic simulation algorithms Cmes - Computer Modeling in Engineering and Sciences. 51: 27-52. DOI: 10.3970/Cmes.2009.051.027 |
0.338 |
|
2008 |
Wang P, Randhawa R, Shaffer CA, Cao Y, Baumann WT. Converting macromolecular regulatory models from deterministic to stochastic formulation Proceedings of the 2008 Spring Simulation Multiconference, Springsim'08. 385-392. DOI: 10.1145/1400549.1400608 |
0.592 |
|
2008 |
Panning TD, Watson LT, Allen NA, Chen KC, Shaffer CA, Tyson JJ. Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle Journal of Global Optimization. 40: 719-738. DOI: 10.1007/S10898-007-9273-7 |
0.312 |
|
2007 |
Mishra D, Shaffer CA, Ramakrishnan N, Watson LT, Bae KK, He J, Verstak AA, Tranter WH. S 4 W: a problem-solving environment for wireless system design Software - Practice and Experience. 37: 1539-1558. DOI: 10.1002/Spe.V37:14 |
0.36 |
|
2006 |
Vass MT, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. The JigCell model builder: a spreadsheet interface for creating biochemical reaction network models. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 3: 155-64. PMID 17048401 DOI: 10.1109/Tcbb.2006.27 |
0.334 |
|
2006 |
Shaffer CA, Randhawa R, Tyson JJ. The role of composition and aggregation in modeling macromolecular regulatory networks Proceedings - Winter Simulation Conference. 1628-1635. DOI: 10.1109/WSC.2006.322937 |
0.559 |
|
2004 |
Vass M, Allen N, Shaffer CA, Ramakrishnan N, Watson LT, Tyson JJ. the JigCell model builder and run manager. Bioinformatics (Oxford, England). 20: 3680-1. PMID 15273159 DOI: 10.1093/Bioinformatics/Bth422 |
0.357 |
|
2004 |
Skidmore RR, Verstak A, Ramakrishnan N, Rappaport TS, Watson LT, He J, Varadarajan S, Shaffer CA, Chen J, Bae KK, Jiang J, Tranter WH. Towards integrated PSEs for wireless communications Acm Sigmobile Mobile Computing and Communications Review. 8: 20-34. DOI: 10.1145/997122.997128 |
0.373 |
|
2003 |
Allen NA, Calzone L, Chen KC, Ciliberto A, Ramakrishnan N, Shaffer CA, Sible JC, Tyson JJ, Vass MT, Watson LT, Zwolak JW. Modeling regulatory networks at Virginia Tech. Omics : a Journal of Integrative Biology. 7: 285-99. PMID 14583117 DOI: 10.1089/153623103322452404 |
0.382 |
|
2003 |
Verstak A, Ramakrishnan N, Watson LT, He J, Shaffer CA, Bae KK, Jiang J, Tranter WH, Rappaport TS. BSML: A binding schema markup language for data interchange in problem solving environments Scientific Programming. 11: 199-224. DOI: 10.1155/2003/314624 |
0.305 |
|
2003 |
Dymond R, Lohani V, Kibler D, Bosch D, Rubin EJ, Dietz R, Chanat J, Speir C, Shaffer CA, Ramakrishnan N, Watson LT. From landscapes to waterscapes: A PSE for landuse change analysis Engineering With Computers. 19: 9-25. DOI: 10.1007/S00366-002-0245-8 |
0.322 |
|
2002 |
Watson LT, Lohani VK, Kibler DF, Dymond RL, Ramakrishnan N, Shaffer CA. Integrated computing environments for watershed management Journal of Computing in Civil Engineering. 16: 259-268. DOI: 10.1061/(Asce)0887-3801(2002)16:4(259) |
0.326 |
|
2002 |
He J, Watson LT, Ramakrishnan N, Shaffer CA, Verstak A, Jiang J, Bae K, Tranter WH. Dynamic data structures for a direct search algorithm Computational Optimization and Applications. 23: 5-25. DOI: 10.1023/A:1019992822938 |
0.342 |
|
2002 |
Ramakrishnan N, Watson LT, Kafura DG, Ribbens CJ, Shaffer CA. Programming environments for multidisciplinary grid communities Concurrency Computation Practice and Experience. 14: 1241-1273. DOI: 10.1002/Cpe.679 |
0.699 |
|
2001 |
Begole J, Smith RB, Struble CA, Shaffer CA. Resource sharing for replicated synchronous groupware Ieee/Acm Transactions On Networking. 9: 833-843. DOI: 10.1109/90.974535 |
0.351 |
|
1999 |
Begole J, Rosson MB, Shaffer CA. Flexible collaboration transparency: supporting worker independence in replicated application-sharing systems Acm Transactions On Computer-Human Interaction. 6: 95-132. DOI: 10.1145/319091.319096 |
0.325 |
|
1999 |
Goel A, Phanouriou C, Kamke FA, Ribbens CJ, Shaffer CA, Watson LT. WBCSim: A prototype problem solving environment for wood-based composites simulations Engineering With Computers. 15: 198-210. DOI: 10.1007/S003660050014 |
0.35 |
|
1997 |
Begole J, Struble CA, Shaffer CA. Leveraging Java applets: Toward collaboration transparency in Java Ieee Internet Computing. 1: 57-64. DOI: 10.1109/4236.601100 |
0.302 |
|
1993 |
Carstensen LW, Shaffer CA, Morrill RW, Fox EA. Geosim: A GIS-based simulation laboratory for introductory geography Journal of Geography. 92: 217-222. DOI: 10.1080/00221349308979656 |
0.343 |
|
1990 |
Shaffer CA, Sametj H, Nelson RC. Quilt; a geographic information system based on quadtrees International Journal of Geographical Information Systems. 4: 103-131. DOI: 10.1080/02693799008941534 |
0.31 |
|
1987 |
Samet H, Shaffer CA, Nelson RC, Huang YG, Rosenfeld A. Recent developments in linear quadtree-based geographic information systems Image and Vision Computing. 5: 187-197. DOI: 10.1016/0262-8856(87)90049-7 |
0.321 |
|
1987 |
Samet H, Shaffer CA, Webber RE. Digitizing the plane with cells of nonuniform size Information Processing Letters. 24: 369-375. DOI: 10.1016/0020-0190(87)90113-X |
0.301 |
|
1986 |
Samet H, Shaffer CA. A Model for the Analysis of Neighbor Finding in Pointer-Based Quadtrees Ieee Transactions On Pattern Analysis and Machine Intelligence. 717-720. DOI: 10.1109/Tpami.1985.4767729 |
0.324 |
|
1984 |
Samet H, Rosenfeld A, Shaffer CA, Webber RE. A geographic information system using quadtrees Pattern Recognition. 17: 647-656. DOI: 10.1016/0031-3203(84)90018-9 |
0.302 |
|
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