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Thomas Gregor, PhD - Publications

Affiliations: 
Physics Princeton University, Princeton, NJ 
Area:
Biophysics, Developmental Biology
Website:
http://tglab.princeton.edu
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55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Munshi R, Ling J, Ryabichko S, Wieschaus E, Gregor T. Transcription factor clusters as information transfer agents. Arxiv. PMID 38495568  0.7
2024 Merle M, Friedman L, Chureau C, Shoushtarizadeh A, Gregor T. Precise and scalable self-organization in mammalian pseudo-embryos. Nature Structural & Molecular Biology. PMID 38491138 DOI: 10.1038/s41594-024-01251-4  0.343
2023 Nikolić M, Antonetti V, Liu F, Muhaxheri G, Petkova MD, Scheeler M, Smith EM, Bialek W, Gregor T. Scale invariance in early embryonic development. Arxiv. PMID 38235065  0.808
2023 Haroush N, Levo M, Wieschaus EF, Gregor T. Functional analysis of the Drosophila eve locus in response to non-canonical combinations of gap gene expression levels. Developmental Cell. PMID 37890488 DOI: 10.1016/j.devcel.2023.10.001  0.815
2023 Brückner DB, Chen H, Barinov L, Zoller B, Gregor T. Stochastic motion and transcriptional dynamics of pairs of distal DNA loci on a compacted chromosome. Science (New York, N.Y.). 380: 1357-1362. PMID 37384691 DOI: 10.1126/science.adf5568  0.782
2023 Chen PT, Zoller B, Levo M, Gregor T. Common bursting relationships underlie eukaryotic transcription dynamics. Arxiv. PMID 37131882  0.783
2023 Brückner DB, Chen H, Barinov L, Zoller B, Gregor T. Stochastic motion and transcriptional dynamics of distal enhancer-promoter pairs on a compacted chromosome. Biorxiv : the Preprint Server For Biology. PMID 36711618 DOI: 10.1101/2023.01.18.524527  0.789
2022 Zoller B, Gregor T, Tkačik G. Eukaryotic gene regulation at equilibrium, or non? Current Opinion in Systems Biology. 31. PMID 36590072 DOI: 10.1016/j.coisb.2022.100435  0.802
2022 Rossine FW, Vercelli GT, Tarnita CE, Gregor T. Structured foraging of soil predators unveils functional responses to bacterial defenses. Proceedings of the National Academy of Sciences of the United States of America. 119: e2210995119. PMID 36538486 DOI: 10.1073/pnas.2210995119  0.765
2022 Voortman L, Anderson C, Urban E, Yuan R, Tran S, Neuhaus-Follini A, Derrick J, Gregor T, Johnston RJ. Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specification in flies. Developmental Cell. PMID 35835116 DOI: 10.1016/j.devcel.2022.06.016  0.301
2022 Seyboldt R, Lavoie J, Henry A, Vanaret J, Petkova MD, Gregor T, François P. Latent space of a small genetic network: Geometry of dynamics and information. Proceedings of the National Academy of Sciences of the United States of America. 119: e2113651119. PMID 35737842 DOI: 10.1073/pnas.2113651119  0.824
2022 Levo M, Raimundo J, Bing XY, Sisco Z, Batut PJ, Ryabichko S, Gregor T, Levine MS. Transcriptional coupling of distant regulatory genes in living embryos. Nature. PMID 35508662 DOI: 10.1038/s41586-022-04680-7  0.812
2022 Singh AP, Wu P, Ryabichko S, Raimundo J, Swan M, Wieschaus E, Gregor T, Toettcher JE. Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation. Cell Reports. 38: 110543. PMID 35320726 DOI: 10.1016/j.celrep.2022.110543  0.752
2021 Bauer M, Petkova MD, Gregor T, Wieschaus EF, Bialek W. Trading bits in the readout from a genetic network. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34772813 DOI: 10.1073/pnas.2109011118  0.798
2021 Tkačik G, Gregor T. The many bits of positional information. Development (Cambridge, England). 148. PMID 33526425 DOI: 10.1242/dev.176065  0.774
2020 Chen H, Gregor T. Using RNA Tags for Multicolor Live Imaging of Chromatin Loci and Transcription in Drosophila Embryos. Methods in Molecular Biology (Clifton, N.J.). 2166: 373-384. PMID 32710421 DOI: 10.1007/978-1-0716-0712-1_22  0.654
2020 Rossine FW, Martinez-Garcia R, Sgro AE, Gregor T, Tarnita CE. Eco-evolutionary significance of "loners". Plos Biology. 18: e3000642. PMID 32191693 DOI: 10.1371/Journal.Pbio.3000642  0.773
2019 Kattge J, Bönisch G, Díaz S, Lavorel S, Prentice IC, Leadley P, Tautenhahn S, Werner GDA, Aakala T, Abedi M, Acosta ATR, Adamidis GC, Adamson K, Aiba M, Albert CH, ... ... Gregor T, et al. TRY plant trait database - enhanced coverage and open access. Global Change Biology. PMID 31891233 DOI: 10.1111/Gcb.14904  0.44
2019 Petkova MD, Tkačik G, Bialek W, Wieschaus EF, Gregor T. Optimal Decoding of Cellular Identities in a Genetic Network. Cell. 176: 844-855.e15. PMID 30712870 DOI: 10.1016/J.Cell.2019.01.007  0.807
2018 Zoller B, Little SC, Gregor T. Diverse Spatial Expression Patterns Emerge from Unified Kinetics of Transcriptional Bursting. Cell. 175: 835-847.e25. PMID 30340044 DOI: 10.1016/J.Cell.2018.09.056  0.824
2018 Chen H, Levo M, Barinov L, Fujioka M, Jaynes JB, Gregor T. Dynamic interplay between enhancer-promoter topology and gene activity. Nature Genetics. PMID 30038397 DOI: 10.1038/S41588-018-0175-Z  0.807
2018 Garcia HG, Gregor T. Live Imaging of mRNA Synthesis in Drosophila. Methods in Molecular Biology (Clifton, N.J.). 1649: 349-357. PMID 29130209 DOI: 10.1007/978-1-4939-7213-5_23  0.682
2018 Little SC, Gregor T. Single mRNA Molecule Detection in Drosophila. Methods in Molecular Biology (Clifton, N.J.). 1649: 127-142. PMID 29130194 DOI: 10.1007/978-1-4939-7213-5_8  0.77
2017 Chen H, Barinov L, Gregor T. Visualization of transcriptional regulation via long-distance enhancer-promoter interactions Mechanisms of Development. 145: S1. DOI: 10.1016/J.Mod.2017.04.514  0.774
2015 Tikhonov M, Little SC, Gregor T. Only accessible information is useful: insights from gradient-mediated patterning. Royal Society Open Science. 2: 150486. PMID 26716005 DOI: 10.1098/Rsos.150486  0.8
2015 Bothma JP, Garcia HG, Ng S, Perry MW, Gregor T, Levine M. Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo. Elife. 4. PMID 26267217 DOI: 10.7554/Elife.07956  0.594
2015 Noorbakhsh J, Schwab DJ, Sgro AE, Gregor T, Mehta P. Modeling oscillations and spiral waves in Dictyostelium populations. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 91: 062711. PMID 26172740 DOI: 10.1103/Physreve.91.062711  0.754
2015 Sgro AE, Schwab DJ, Noorbakhsh J, Mestler T, Mehta P, Gregor T. From intracellular signaling to population oscillations: bridging size- and time-scales in collective behavior. Molecular Systems Biology. 11: 779. PMID 25617347 DOI: 10.15252/Msb.20145352  0.752
2015 Tka?ik G, Dubuis JO, Petkova MD, Gregor T. Positional information, positional error, and readout precision in morphogenesis: a mathematical framework. Genetics. 199: 39-59. PMID 25361898 DOI: 10.1534/Genetics.114.171850  0.8
2015 Bothma JP, Garcia HG, Ng S, Perry MW, Gregor T, Levine M. Author response: Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo Elife. DOI: 10.7554/Elife.07956.013  0.58
2015 Bothma JP, Garcia HG, Ng S, Perry MW, Gregor T, Levine M. Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo Elife. 4. DOI: 10.7554/eLife.07956.001  0.554
2015 Gregor T. Measuring Gene Expression in Fly Embryos: From Single Molecules to Network Dynamics Biophysical Journal. 108: 44a. DOI: 10.1016/J.Bpj.2014.11.275  0.424
2014 Gregor T, Garcia HG, Little SC. The embryo as a laboratory: quantifying transcription in Drosophila. Trends in Genetics : Tig. 30: 364-75. PMID 25005921 DOI: 10.1016/J.Tig.2014.06.002  0.826
2014 Bothma JP, Garcia HG, Esposito E, Schlissel G, Gregor T, Levine M. Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos. Proceedings of the National Academy of Sciences of the United States of America. 111: 10598-603. PMID 24994903 DOI: 10.1073/Pnas.1410022111  0.683
2014 Abouchar L, Petkova MD, Steinhardt CR, Gregor T. Fly wing vein patterns have spatial reproducibility of a single cell. Journal of the Royal Society, Interface / the Royal Society. 11: 20140443. PMID 24942847 DOI: 10.1098/Rsif.2014.0443  0.799
2014 Petkova MD, Little SC, Liu F, Gregor T. Maternal origins of developmental reproducibility. Current Biology : Cb. 24: 1283-8. PMID 24856210 DOI: 10.1016/J.Cub.2014.04.028  0.79
2014 Krotov D, Dubuis JO, Gregor T, Bialek W. Morphogenesis at criticality. Proceedings of the National Academy of Sciences of the United States of America. 111: 3683-8. PMID 24516161 DOI: 10.1073/Pnas.1324186111  0.815
2013 Garcia HG, Tikhonov M, Lin A, Gregor T. Quantitative imaging of transcription in living Drosophila embryos links polymerase activity to patterning. Current Biology : Cb. 23: 2140-5. PMID 24139738 DOI: 10.1016/J.Cub.2013.08.054  0.834
2013 Dubuis JO, Tkacik G, Wieschaus EF, Gregor T, Bialek W. Positional information, in bits. Proceedings of the National Academy of Sciences of the United States of America. 110: 16301-8. PMID 24089448 DOI: 10.1073/Pnas.1315642110  0.798
2013 Little SC, Tikhonov M, Gregor T. Precise developmental gene expression arises from globally stochastic transcriptional activity. Cell. 154: 789-800. PMID 23953111 DOI: 10.1016/J.Cell.2013.07.025  0.833
2013 Little SC, Gregor T. Sorting sloppy Sonic. Cell. 153: 509-10. PMID 23622235 DOI: 10.1016/J.Cell.2013.04.021  0.742
2013 Liu F, Morrison AH, Gregor T. Dynamic interpretation of maternal inputs by the Drosophila segmentation gene network. Proceedings of the National Academy of Sciences of the United States of America. 110: 6724-9. PMID 23580621 DOI: 10.1073/Pnas.1220912110  0.525
2013 Dubuis JO, Samanta R, Gregor T. Accurate measurements of dynamics and reproducibility in small genetic networks. Molecular Systems Biology. 9: 639. PMID 23340845 DOI: 10.1038/Msb.2012.72  0.823
2013 Garcia HG, Lin A, Tikhonov M, Gregor T. Novel Mechanism for Noise Reduction between Nuclear Transcriptional Activity and Cytoplasmic MRNA Distributions Living Fly Embryos Biophysical Journal. 104: 552a. DOI: 10.1016/J.Bpj.2012.11.3062  0.673
2012 Morrison AH, Scheeler M, Dubuis J, Gregor T. Quantifying the Bicoid morphogen gradient in living fly embryos. Cold Spring Harbor Protocols. 2012: 398-406. PMID 22474658 DOI: 10.1101/Pdb.Top068536  0.83
2011 Little SC, Tkačik G, Kneeland TB, Wieschaus EF, Gregor T. The formation of the Bicoid morphogen gradient requires protein movement from anteriorly localized mRNA. Plos Biology. 9: e1000596. PMID 21390295 DOI: 10.1371/Journal.Pbio.1000596  0.786
2010 Mehta P, Gregor T. Approaching the molecular origins of collective dynamics in oscillating cell populations. Current Opinion in Genetics & Development. 20: 574-80. PMID 20934869 DOI: 10.1016/J.Gde.2010.09.004  0.328
2008 Tkacik G, Gregor T, Bialek W. The role of input noise in transcriptional regulation. Plos One. 3: e2774. PMID 18648612 DOI: 10.1371/Journal.Pone.0002774  0.803
2008 Gregor T, McGregor AP, Wieschaus EF. Shape and function of the Bicoid morphogen gradient in dipteran species with different sized embryos. Developmental Biology. 316: 350-8. PMID 18328473 DOI: 10.1016/J.Ydbio.2008.01.039  0.708
2008 Bialek W, Gregor T, Tank DW, Wieschaus EF. Response: Can We Fit All of the Data? Cell. 132: 17-18. DOI: 10.1016/J.Cell.2007.12.023  0.76
2007 Gregor T, Tank DW, Wieschaus EF, Bialek W. Probing the limits to positional information. Cell. 130: 153-64. PMID 17632062 DOI: 10.1016/J.Cell.2007.05.025  0.79
2007 Gregor T, Wieschaus EF, McGregor AP, Bialek W, Tank DW. Stability and nuclear dynamics of the bicoid morphogen gradient. Cell. 130: 141-52. PMID 17632061 DOI: 10.1016/J.Cell.2007.05.026  0.798
2005 Gregor T, Bialek W, de Ruyter van Steveninck RR, Tank DW, Wieschaus EF. Diffusion and scaling during early embryonic pattern formation. Proceedings of the National Academy of Sciences of the United States of America. 102: 18403-7. PMID 16352710 DOI: 10.1073/Pnas.0509483102  0.792
2005 Gregor T, Car R. Minimization of the potential energy surface of Lennard-Jones clusters by quantum optimization Chemical Physics Letters. 412: 125-130. DOI: 10.1016/J.Cplett.2005.06.075  0.445
1999 Gregor T, Mauri F, Car R. A comparison of methods for the calculation of NMR chemical shifts Journal of Chemical Physics. 111: 1815-1822. DOI: 10.1063/1.479451  0.458
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