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Vladimir Sobolev - Publications

Affiliations: 
Weizmann Institute of Science, Rehovot, Israel 
Area:
Biochemistry
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Antonacci A, Lambreva MD, Margonelli A, Sobolev AP, Pastorelli S, Bertalan I, Johanningmeier U, Sobolev V, Samish I, Edelman M, Havurinne V, Tyystjärvi E, Giardi MT, Mattoo AK, Rea G. Photosystem-II D1 protein mutants of Chlamydomonas reinhardtii in relation to metabolic rewiring and remodelling of H-bond network at Q site. Scientific Reports. 8: 14745. PMID 30283151 DOI: 10.1038/S41598-018-33146-Y  0.313
2015 Azia A, Levy R, Unger R, Edelman M, Sobolev V. Genome-wide computational determination of the human metalloproteome. Proteins. 83: 931-9. PMID 25739467 DOI: 10.1002/Prot.24790  0.44
2013 Sobolev V, Edelman M, Dym O, Unger T, Albeck S, Kirma M, Galili G. Structure of ALD1, a plant-specific homologue of the universal diaminopimelate aminotransferase enzyme of lysine biosynthesis. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 84-9. PMID 23385743 DOI: 10.1107/S1744309112050270  0.4
2013 Potapov V, Edelman M, Sobolev V. Residue-residue contacts: application to analysis of secondary structure interactions. Methods in Molecular Biology (Clifton, N.J.). 932: 159-73. PMID 22987352 DOI: 10.1007/978-1-62703-065-6_10  0.5
2013 Sobolev V, Edelman M. Web tools for predicting metal binding sites in proteins Israel Journal of Chemistry. 53: 166-172. DOI: 10.1002/Ijch.201200084  0.451
2011 Levy R, Sobolev V, Edelman M. First- and second-shell metal binding residues in human proteins are disproportionately associated with disease-related SNPs. Human Mutation. 32: 1309-18. PMID 21898656 DOI: 10.1002/Humu.21573  0.417
2009 Levy R, Edelman M, Sobolev V. Prediction of 3D metal binding sites from translated gene sequences based on remote-homology templates. Proteins. 76: 365-74. PMID 19173310 DOI: 10.1002/Prot.22352  0.434
2008 Potapov V, Reichmann D, Abramovich R, Filchtinski D, Zohar N, Ben Halevy D, Edelman M, Sobolev V, Schreiber G. Computational redesign of a protein-protein interface for high affinity and binding specificity using modular architecture and naturally occurring template fragments. Journal of Molecular Biology. 384: 109-19. PMID 18804117 DOI: 10.1016/J.Jmb.2008.08.078  0.448
2008 Babor M, Gerzon S, Raveh B, Sobolev V, Edelman M. Prediction of transition metal-binding sites from apo protein structures. Proteins. 70: 208-17. PMID 17657805 DOI: 10.1002/Prot.21587  0.462
2007 Eyal E, Frenkel-Morgenstern M, Sobolev V, Pietrokovski S. A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction. Proteins. 67: 142-53. PMID 17243158 DOI: 10.1002/Prot.21223  0.448
2007 Schreiber G, Reichmann D, Cohen M, Pillip Y, Rahat O, Dym O, Potapov V, Sobolev V, Edelman M. Protein–protein interaction: from mechanism to protein design Acta Crystallographica Section a Foundations of Crystallography. 63: s18-s18. DOI: 10.1107/S0108767307099606  0.427
2005 Eyal E, Gerzon S, Potapov V, Edelman M, Sobolev V. The limit of accuracy of protein modeling: influence of crystal packing on protein structure. Journal of Molecular Biology. 351: 431-42. PMID 16005885 DOI: 10.1016/J.Jmb.2005.05.066  0.391
2005 Sobolev V, Eyal E, Gerzon S, Potapov V, Babor M, Prilusky J, Edelman M. SPACE: a suite of tools for protein structure prediction and analysis based on complementarity and environment. Nucleic Acids Research. 33: W39-43. PMID 15980496 DOI: 10.1093/Nar/Gki398  0.412
2005 Babor M, Greenblatt HM, Edelman M, Sobolev V. Flexibility of metal binding sites in proteins on a database scale. Proteins. 59: 221-30. PMID 15726624 DOI: 10.1002/Prot.20431  0.392
2004 Potapov V, Sobolev V, Edelman M, Kister A, Gelfand I. Protein--protein recognition: juxtaposition of domain and interface cores in immunoglobulins and other sandwich-like proteins. Journal of Molecular Biology. 342: 665-79. PMID 15327963 DOI: 10.1016/J.Jmb.2004.06.072  0.444
2004 Eyal E, Najmanovich R, Mcconkey BJ, Edelman M, Sobolev V. Importance of Solvent Accessibility and Contact Surfaces in Modeling Side-Chain Conformations in Proteins Journal of Computational Chemistry. 25: 712-724. PMID 14978714 DOI: 10.1002/Jcc.10420  0.425
2003 Kuttner YY, Sobolev V, Raskind A, Edelman M. A consensus-binding structure for adenine at the atomic level permits searching for the ligand site in a wide spectrum of adenine-containing complexes. Proteins. 52: 400-11. PMID 12866051 DOI: 10.1002/Prot.10422  0.447
2003 McConkey BJ, Sobolev V, Edelman M. Discrimination of native protein structures using atom-atom contact scoring. Proceedings of the National Academy of Sciences of the United States of America. 100: 3215-20. PMID 12631702 DOI: 10.1073/Pnas.0535768100  0.455
2003 Eyal E, Najmanovich R, Edelman M, Sobolev V. Protein side-chain rearrangement in regions of point mutations Proteins: Structure, Function and Genetics. 50: 272-282. PMID 12486721 DOI: 10.1002/Prot.10276  0.42
2003 McConkey BJ, Sobolev V, Edelman M. Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure. Bioinformatics (Oxford, England). 18: 1365-73. PMID 12376381 DOI: 10.1093/Bioinformatics/18.10.1365  0.375
2002 Babor M, Sobolev V, Edelman M. Conserved positions for ribose recognition: importance of water bridging interactions among ATP, ADP and FAD-protein complexes. Journal of Molecular Biology. 323: 523-32. PMID 12381306 DOI: 10.1016/S0022-2836(02)00975-0  0.45
2001 Eyal E, Najmanovich R, Sobolev V, Edelman M. MutaProt: A web interface for structural analysis of point mutations Bioinformatics. 17: 381-382. PMID 11301313 DOI: 10.1093/Bioinformatics/17.4.381  0.346
2000 Najmanovich R, Kuttner J, Sobolev V, Edelman M. Side-chain flexibility in proteins upon ligand binding Proteins: Structure, Function and Genetics. 39: 261-268. PMID 10737948 DOI: 10.1002/(Sici)1097-0134(20000515)39:3<261::Aid-Prot90>3.0.Co;2-4  0.448
1999 Sobolev V, Sorokine A, Prilusky J, Abola EE, Edelman M. Automated analysis of interatomic contacts in proteins. Bioinformatics (Oxford, England). 15: 327-32. PMID 10320401 DOI: 10.1093/Bioinformatics/15.4.327  0.447
1999 Edelman M, Sobolev V. Using atomic-level structure to probe protein function Acm Sigbio Newsletter. 19: 13-14. DOI: 10.1145/340358.340383  0.4
1997 Sobolev V, Moallem TM, Wade RC, Vriend G, Edelman M. CASP2 molecular docking predictions with the LIGIN software Proteins: Structure, Function and Genetics. 29: 210-214. PMID 9485514 DOI: 10.1002/(Sici)1097-0134(1997)1+<210::Aid-Prot28>3.0.Co;2-Q  0.473
1996 Sobolev V, Wade RC, Vriend G, Edelman M. Molecular docking using surface complementarity Proteins: Structure, Function and Genetics. 25: 120-129. PMID 8727324 DOI: 10.1002/(Sici)1097-0134(199605)25:1<120::Aid-Prot10>3.0.Co;2-M  0.476
1995 Sobolev V, Edelman M. Modeling the quinone-B binding site of the photosystem-II reaction center using notions of complementarity and contact-surface between atoms. Proteins. 21: 214-25. PMID 7784425 DOI: 10.1002/Prot.340210304  0.456
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