| Year |
Citation |
Score |
| 2024 |
Jankowski MS, Griffith D, Shastry DG, Pelham JF, Ginell GM, Thomas J, Karande P, Holehouse AS, Hurley JM. Disordered clock protein interactions and charge blocks turn an hourglass into a persistent circadian oscillator. Nature Communications. 15: 3523. PMID 38664421 DOI: 10.1038/s41467-024-47761-z |
0.815 |
|
| 2023 |
Sutton LB, Hurley JM. Circadian regulation of physiology by disordered protein-protein interactions. Current Opinion in Structural Biology. 84: 102743. PMID 38091925 DOI: 10.1016/j.sbi.2023.102743 |
0.789 |
|
| 2023 |
Pelham JF, Mosier AE, Altshuler SC, Rhodes ML, Kirchhoff CL, Fall WB, Mann C, Baik LS, Chiu JC, Hurley JM. Conformational changes in the negative arm of the circadian clock correlate with dynamic interactomes involved in post-transcriptional regulation. Cell Reports. 42: 112376. PMID 37043358 DOI: 10.1016/j.celrep.2023.112376 |
0.828 |
|
| 2023 |
Muthukumarasamy I, Buel SM, Hurley JM, Dordick JS. NOX2 inhibition enables retention of the circadian clock in BV2 microglia and primary macrophages. Frontiers in Immunology. 14: 1106515. PMID 36814920 DOI: 10.3389/fimmu.2023.1106515 |
0.719 |
|
| 2022 |
Cervantes-Silva MP, Carroll RG, Wilk MM, Moreira D, Payet CA, O'Siorain JR, Cox SL, Fagan LE, Klavina PA, He Y, Drewinski T, McGinley A, Buel SM, Timmons GA, Early JO, ... ... Hurley JM, et al. The circadian clock influences T cell responses to vaccination by regulating dendritic cell antigen processing. Nature Communications. 13: 7217. PMID 36470865 DOI: 10.1038/s41467-022-34897-z |
0.78 |
|
| 2022 |
Buel SM, Debopadhaya S, De Los Santos H, Edwards KM, David AM, Dao UH, Bennett KP, Hurley JM. The PAICE Suite Reveals Circadian Post-Transcriptional Timing of Non-Coding RNAs and Spliceosome Components in Mus musculus Macrophages. G3 (Bethesda, Md.). PMID 35876788 DOI: 10.1093/g3journal/jkac176 |
0.791 |
|
| 2022 |
Clark GT, Yu Y, Urban CA, Fu G, Wang C, Zhang F, Linhardt RJ, Hurley JM. Circadian control of heparan sulfate levels times phagocytosis of amyloid beta aggregates. Plos Genetics. 18: e1009994. PMID 35143487 DOI: 10.1371/journal.pgen.1009994 |
0.744 |
|
| 2021 |
Mosier AE, Hurley JM. Circadian Interactomics: How Research Into Protein-Protein Interactions Beyond the Core Clock Has Influenced the Model of Circadian Timekeeping. Journal of Biological Rhythms. 7487304211014622. PMID 34056936 DOI: 10.1177/07487304211014622 |
0.75 |
|
| 2021 |
Collins EJ, Cervantes-Silva MP, Timmons GA, O'Siorain JR, Curtis AM, Hurley JM. Post-transcriptional circadian regulation in macrophages organizes temporally distinct immunometabolic states. Genome Research. PMID 33436377 DOI: 10.1101/gr.263814.120 |
0.716 |
|
| 2020 |
Pelham JF, Dunlap JC, Hurley JM. Intrinsic disorder is an essential characteristic of components in the conserved circadian circuit. Cell Communication and Signaling : Ccs. 18: 181. PMID 33176800 DOI: 10.1186/s12964-020-00658-y |
0.823 |
|
| 2020 |
Santos HL, Bennett KP, Hurley JM. MOSAIC: a joint modeling methodology for combined circadian and Non-Circadian analysis of Multi-Omics data. Bioinformatics (Oxford, England). PMID 33051654 DOI: 10.1093/bioinformatics/btaa877 |
0.446 |
|
| 2020 |
Hurley JM. Cytoplasmic traffic jams affect circadian timing Science Translational Medicine. 12: eabf4681. DOI: 10.1126/scitranslmed.abf4681 |
0.387 |
|
| 2019 |
De Los Santos H, Bennett KP, Hurley JM. ENCORE: A Visualization Tool for Insight into Circadian Omics. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2019: 5-14. PMID 31754663 DOI: 10.1145/3307339.3342137 |
0.83 |
|
| 2019 |
De Los Santos H, Collins EJ, Mann C, Sagan AW, Jankowski MS, Bennett KP, Hurley JM. ECHO: an Application for Detection and Analysis of Oscillators Identifies Metabolic Regulation on Genome-Wide Circadian Output. Bioinformatics (Oxford, England). PMID 31384918 DOI: 10.1093/Bioinformatics/Btz617 |
0.8 |
|
| 2019 |
Cannon WR, Britton SR, Banwarth-Kuhn M, Alber M, Hurley JM, Jankowski MS, Zucker JD, Baxter DJ, Kumar N, Baker SE, Dunlap JC. Prediction of Metabolite Concentrations, Rate Constants and Post-Translational Regulation of Neurospora Crassa using Maximum Entropy Optimizations and Reinforcement Learning Biophysical Journal. 116: 130a-131a. DOI: 10.1016/J.Bpj.2018.11.724 |
0.672 |
|
| 2019 |
Mosier AE, Hurley JM. Unveiling the Impact of the Negative Arm of the Circadian Clock on Output in Neurospora crassa Biophysical Journal. 116: 63a. DOI: 10.1016/J.Bpj.2018.11.387 |
0.709 |
|
| 2019 |
Pelham J, Mosier AE, Hurley JM. Characterizing Time-of-Day Conformational Changes in the IDP Frequency at the Heart of the Circadian Clock in N. Crassa using the Crafty Protocol Biophysical Journal. 116: 198a. DOI: 10.1016/J.Bpj.2018.11.1096 |
0.783 |
|
| 2018 |
Cannon WR, Zucker JD, Baxter DJ, Kumar N, Baker SE, Hurley JM, Dunlap JC. Prediction of Metabolite Concentrations, Rate Constants and Post-Translational Regulation Using Maximum Entropy-Based Simulations with Application to Central Metabolism of . Processes (Basel, Switzerland). 6. PMID 33824861 DOI: 10.3390/pr6060063 |
0.494 |
|
| 2018 |
Hurley JM, Jankowski MS, De Los Santos H, Crowell AM, Fordyce SB, Zucker JD, Kumar N, Purvine SO, Robinson EW, Shukla A, Zink E, Cannon WR, Baker SE, Loros JJ, Dunlap JC. Circadian Proteomic Analysis Uncovers Mechanisms of Post-Transcriptional Regulation in Metabolic Pathways. Cell Systems. PMID 30553726 DOI: 10.1016/J.Cels.2018.10.014 |
0.81 |
|
| 2018 |
Pelham JF, Mosier AE, Hurley JM. Characterizing Time-of-Day Conformational Changes in the Intrinsically Disordered Proteins of the Circadian Clock. Methods in Enzymology. 611: 503-529. PMID 30471697 DOI: 10.1016/Bs.Mie.2018.08.024 |
0.829 |
|
| 2017 |
De Los Santos H, Hurley JM, Collins EJ, Bennett KP. Circadian Rhythms in Exhibit Biologically Relevant Driven and Damped Harmonic Oscillations. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2017: 455-463. PMID 31844846 DOI: 10.1145/3107411.3107420 |
0.801 |
|
| 2017 |
Coldsnow KD, Relyea RA, Hurley JM. Evolution to environmental contamination ablates the circadian clock of an aquatic sentinel species. Ecology and Evolution. 7: 10339-10349. PMID 29238559 DOI: 10.1002/Ece3.3490 |
0.435 |
|
| 2017 |
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, ... ... Hurley JM, et al. Guidelines for Genome-Scale Analysis of Biological Rhythms. Journal of Biological Rhythms. 748730417728663. PMID 29098954 DOI: 10.1177/0748730417728663 |
0.781 |
|
| 2017 |
Hurley JM. The Impact of IDPs on Circadian Rhythms Biophysical Journal. 112: 210a. DOI: 10.1016/J.Bpj.2016.11.1158 |
0.557 |
|
| 2017 |
Hurley JM. Intrinsic Disorder in the Highly-Ordered Circadian Clock Biophysical Journal. 112: 12a. DOI: 10.1016/J.Bpj.2016.11.096 |
0.548 |
|
| 2016 |
Hurley JM, Loros JJ, Dunlap JC. Circadian Oscillators: Around the Transcription-Translation Feedback Loop and on to Output. Trends in Biochemical Sciences. PMID 27498225 DOI: 10.1016/J.Tibs.2016.07.009 |
0.77 |
|
| 2016 |
Conrad KS, Hurley JM, Widom J, Ringelberg CS, Loros JJ, Dunlap JC, Crane BR. Structure of the frequency-interacting RNA helicase: a protein interaction hub for the circadian clock. The Embo Journal. PMID 27340124 DOI: 10.15252/Embj.201694327 |
0.729 |
|
| 2015 |
Hurley JM, Loros JJ, Dunlap JC. The circadian system as an organizer of metabolism. Fungal Genetics and Biology : Fg & B. PMID 26498192 DOI: 10.1016/J.Fgb.2015.10.002 |
0.743 |
|
| 2015 |
Hurley J, Loros JJ, Dunlap JC. Dissecting the mechanisms of the clock in Neurospora. Methods in Enzymology. 551: 29-52. PMID 25662450 DOI: 10.1016/Bs.Mie.2014.10.009 |
0.77 |
|
| 2014 |
Hurley JM, Dasgupta A, Emerson JM, Zhou X, Ringelberg CS, Knabe N, Lipzen AM, Lindquist EA, Daum CG, Barry KW, Grigoriev IV, Smith KM, Galagan JE, Bell-Pedersen D, Freitag M, et al. Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential. Proceedings of the National Academy of Sciences of the United States of America. 111: 16995-7002. PMID 25362047 DOI: 10.1073/Pnas.1418963111 |
0.773 |
|
| 2013 |
Hurley JM, Larrondo LF, Loros JJ, Dunlap JC. Conserved RNA helicase FRH acts nonenzymatically to support the intrinsically disordered neurospora clock protein FRQ. Molecular Cell. 52: 832-43. PMID 24316221 DOI: 10.1016/J.Molcel.2013.11.005 |
0.801 |
|
| 2013 |
Hurley JM, Dunlap JC. Cell biology: A fable of too much too fast. Nature. 495: 57-8. PMID 23417066 DOI: 10.1038/Nature11952 |
0.606 |
|
| 2012 |
Hurley JM, Chen CH, Loros JJ, Dunlap JC. Light-inducible system for tunable protein expression in Neurospora crassa. G3 (Bethesda, Md.). 2: 1207-12. PMID 23050231 DOI: 10.1534/G3.112.003939 |
0.797 |
|
| 2012 |
Rothenbacher FP, Suzuki M, Hurley JM, Montville TJ, Kirn TJ, Ouyang M, Woychik NA. Clostridium difficile MazF toxin exhibits selective, not global, mRNA cleavage. Journal of Bacteriology. 194: 3464-74. PMID 22544268 DOI: 10.1128/Jb.00217-12 |
0.646 |
|
| 2011 |
Hurley JM, Cruz JW, Ouyang M, Woychik NA. Bacterial toxin RelE mediates frequent codon-independent mRNA cleavage from the 5' end of coding regions in vivo. The Journal of Biological Chemistry. 286: 14770-8. PMID 21324908 DOI: 10.1074/Jbc.M110.108969 |
0.666 |
|
| 2010 |
Arbing MA, Handelman SK, Kuzin AP, Verdon G, Wang C, Su M, Rothenbacher FP, Abashidze M, Liu M, Hurley JM, Xiao R, Acton T, Inouye M, Montelione GT, Woychik NA, et al. Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems. Structure (London, England : 1993). 18: 996-1010. PMID 20696400 DOI: 10.1016/J.Str.2010.04.018 |
0.687 |
|
| 2009 |
Hurley JM, Woychik NA. Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites. The Journal of Biological Chemistry. 284: 18605-13. PMID 19423702 DOI: 10.1074/Jbc.M109.008763 |
0.64 |
|
| 2008 |
Kinzy TG, De Stefano LA, Esposito AM, Hurley JM, Roy R, Valentin-Acevedo AJ, Chang KH, Davila J, Defren JM, Donovan J, Irizarry-Barreto P, Soto A, Ysla RM, Copeland HL, Copeland PR. A birth-to-death view of mRNA from the RNA recognition motif perspective. Biochemistry and Molecular Biology Education : a Bimonthly Publication of the International Union of Biochemistry and Molecular Biology. 36: 1-8. PMID 21591152 DOI: 10.1002/Bmb.20149 |
0.39 |
|
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