Andrea Patrignani - Publications

Affiliations: 
2002-2022 FGCZ ETH Zürich | University of Zürich 
Area:
Genomics
Website:
FGCZ

15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Qi W, Lim YW, Patrignani A, Schläpfer P, Bratus-Neuenschwander A, Grüter S, Chanez C, Rodde N, Prat E, Vautrin S, Fustier MA, Pratas D, Schlapbach R, Gruissem W. The haplotype-resolved chromosome pairs of a heterozygous diploid African cassava cultivar reveal novel pan-genome and allele-specific transcriptome features. Gigascience. 11. PMID 35333302 DOI: 10.1093/gigascience/giac028  0.488
2021 Singh Somvanshi V, Dash M, Bhat CG, Budhwar R, Godwin J, Shukla RN, Patrignani A, Schlapbach R, Rao U. An improved draft genome assembly of Meloidogyne graminicola IARI strain using long-read sequencing. Gene. 145748. PMID 34077775 DOI: 10.1016/j.gene.2021.145748  0.436
2019 Qi W, Colarusso A, Olombrada M, Parrilli E, Patrignani A, Tutino ML, Toll-Riera M. New insights on Pseudoalteromonas haloplanktis TAC125 genome organization and benchmarks of genome assembly applications using next and third generation sequencing technologies. Scientific Reports. 9: 16444. PMID 31712730 DOI: 10.1038/s41598-019-52832-z  0.37
2019 Kuon JE, Qi W, Schläpfer P, Hirsch-Hoffmann M, von Bieberstein PR, Patrignani A, Poveda L, Grob S, Keller M, Shimizu-Inatsugi R, Grossniklaus U, Vanderschuren H, Gruissem W. Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars. Bmc Biology. 17: 75. PMID 31533702 DOI: 10.1186/S12915-019-0697-6  0.438
2019 Schmid M, Frei D, Patrignani A, Schlapbach R, Frey JE, Remus-Emsermann MNP, Ahrens CH. Pushing the limits of de novo genome assembly for complex prokaryotic genomes harboring very long, near identical repeats. Nucleic Acids Research. 46: 8953-8965. PMID 30137508 DOI: 10.1093/nar/gky726  0.438
2018 Mehta D, Hirsch-Hoffmann M, Were M, Patrignani A, Zaidi SS, Were H, Gruissem W, Vanderschuren H. A new full-length circular DNA sequencing method for viral-sized genomes reveals that RNAi transgenic plants provoke a shift in geminivirus populations in the field. Nucleic Acids Research. PMID 30357413 DOI: 10.1093/Nar/Gky914  0.445
2017 Omasits U, Varadarajan AR, Schmid M, Goetze S, Melidis D, Bourqui M, Nikolayeva O, Québatte M, Patrignani A, Dehio C, Frey JE, Robinson MD, Wollscheid B, Ahrens CH. An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics. Genome Research. PMID 29141959 DOI: 10.1101/gr.218255.116  0.378
2017 Sipos G, Prasanna AN, Walter MC, O'Connor E, Bálint B, Krizsán K, Kiss B, Hess J, Varga T, Slot J, Riley R, Bóka B, Rigling D, Barry K, Lee J, ... ... Patrignani A, et al. Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria. Nature Ecology & Evolution. PMID 29085064 DOI: 10.1038/S41559-017-0347-8  0.382
2017 Hatakeyama M, Aluri S, Balachadran MT, Sivarajan SR, Patrignani A, Grüter S, Poveda L, Shimizu-Inatsugi R, Baeten J, Francoijs KJ, Nataraja KN, Reddy YAN, Phadnis S, Ravikumar RL, Schlapbach R, et al. Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. PMID 28985356 DOI: 10.1093/dnares/dsx036  0.457
2015 Meienberg J, Zerjavic K, Keller I, Okoniewski M, Patrignani A, Ludin K, Xu Z, Steinmann B, Carrel T, Röthlisberger B, Schlapbach R, Bruggmann R, Matyas G. New insights into the performance of human whole-exome capture platforms. Nucleic Acids Research. 43: e76. PMID 25820422 DOI: 10.1093/nar/gkv216  0.304
2014 Greminger MP, Stölting KN, Nater A, Goossens B, Arora N, Bruggmann R, Patrignani A, Nussberger B, Sharma R, Kraus RH, Ambu LN, Singleton I, Chikhi L, van Schaik CP, Krützen M. Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms. Bmc Genomics. 15: 16. PMID 24405840 DOI: 10.1186/1471-2164-15-16  0.383
2013 Okoniewski MJ, Meienberg J, Patrignani A, Szabelska A, Matyas G, Schlapbach R. Precise breakpoint localization of large genomic deletions using PacBio and Illumina next-generation sequencers. Biotechniques. 54: 98-100. PMID 23384181 DOI: 10.2144/000113992  0.377
2012 Müller M, Patrignani A, Rehrauer H, Gruissem W, Hennig L. Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays. Plant Methods. 8: 18. PMID 22694760 DOI: 10.1186/1746-4811-8-18  0.451
2010 Rehrauer H, Aquino C, Gruissem W, Henz SR, Hilson P, Laubinger S, Naouar N, Patrignani A, Rombauts S, Shu H, Van de Peer Y, Vuylsteke M, Weigel D, Zeller G, Hennig L. AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. Plant Physiology. 152: 487-99. PMID 20032078 DOI: 10.1104/Pp.109.150185  0.478
2007 Mátyás G, Alonso S, Patrignani A, Marti M, Arnold E, Magyar I, Henggeler C, Carrel T, Steinmann B, Berger W. Large genomic fibrillin-1 (FBN1) gene deletions provide evidence for true haploinsufficiency in Marfan syndrome. Human Genetics. 122: 23-32. PMID 17492313 DOI: 10.1007/s00439-007-0371-x  0.422
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