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Hamid Mirzaei, Ph.D. - Publications

Affiliations: 
2005 Purdue University, West Lafayette, IN, United States 
Area:
Analytical Chemistry
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33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Yang YS, Kato M, Wu X, Litsios A, Sutter BM, Wang Y, Hsu CH, Wood NE, Lemoff A, Mirzaei H, Heinemann M, Tu BP. Yeast Ataxin-2 Forms an Intracellular Condensate Required for the Inhibition of TORC1 Signaling during Respiratory Growth. Cell. PMID 30982600 DOI: 10.1016/J.Cell.2019.02.043  0.321
2016 Kalantari R, Hicks JA, Li L, Gagnon KT, Sridhara V, Lemoff A, Mirzaei H, Corey DR. Stable association of RNAi machinery is conserved between the cytoplasm and nucleus of human cells. Rna (New York, N.Y.). PMID 27198507 DOI: 10.1261/Rna.056499.116  0.322
2015 Katafuchi T, Esterházy D, Lemoff A, Ding X, Sondhi V, Kliewer SA, Mirzaei H, Mangelsdorf DJ. Detection of FGF15 in plasma by stable isotope standards and capture by anti-peptide antibodies and targeted mass spectrometry. Cell Metabolism. 21: 898-904. PMID 26039452 DOI: 10.1016/J.Cmet.2015.05.004  0.303
2014 Salomon D, Kinch LN, Trudgian DC, Guo X, Klimko JA, Grishin NV, Mirzaei H, Orth K. Marker for type VI secretion system effectors. Proceedings of the National Academy of Sciences of the United States of America. 111: 9271-6. PMID 24927539 DOI: 10.1073/Pnas.1406110111  0.335
2014 Trudgian DC, Fischer R, Guo X, Kessler BM, Mirzaei H. GOAT--a simple LC-MS/MS gradient optimization tool. Proteomics. 14: 1467-71. PMID 24723505 DOI: 10.1002/Pmic.201300524  0.385
2014 Guo X, Trudgian DC, Lemoff A, Yadavalli S, Mirzaei H. Confetti: a multiprotease map of the HeLa proteome for comprehensive proteomics. Molecular & Cellular Proteomics : McP. 13: 1573-84. PMID 24696503 DOI: 10.1074/Mcp.M113.035170  0.445
2011 Sun KH, Chang KH, Clawson S, Ghosh S, Mirzaei H, Regnier F, Shah K. Glutathione-S-transferase P1 is a critical regulator of Cdk5 kinase activity. Journal of Neurochemistry. 118: 902-14. PMID 21668448 DOI: 10.1111/J.1471-4159.2011.07343.X  0.378
2010 Mirzaei H, Rogers RS, Grimes B, Eng J, Aderem A, Aebersold R. Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry. Molecular Biosystems. 6: 2004-14. PMID 20694217 DOI: 10.1039/C005242F  0.403
2010 Dilworth DJ, Saleem RA, Rogers RS, Mirzaei H, Boyle J, Aitchison JD. QTIPS: a novel method of unsupervised determination of isotopic amino acid distribution in SILAC experiments. Journal of the American Society For Mass Spectrometry. 21: 1417-22. PMID 20451407 DOI: 10.1016/J.Jasms.2010.04.002  0.357
2009 Brentnall TA, Pan S, Bronner MP, Crispin DA, Mirzaei H, Cooke K, Tamura Y, Nikolskaya T, Jebailey L, Goodlett DR, McIntosh M, Aebersold R, Rabinovitch PS, Chen R. Proteins That Underlie Neoplastic Progression of Ulcerative Colitis. Proteomics. Clinical Applications. 3: 1326. PMID 20098637 DOI: 10.1002/Prca.200900061  0.318
2009 Mirzaei H, Brusniak MY, Mueller LN, Letarte S, Watts JD, Aebersold R. Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometry. Molecular & Cellular Proteomics : McP. 8: 1934-46. PMID 19411281 DOI: 10.1074/Mcp.M800569-Mcp200  0.406
2009 Pan S, Chen R, Reimel BA, Crispin DA, Mirzaei H, Cooke K, Coleman JF, Lane Z, Bronner MP, Goodlett DR, McIntosh MW, Traverso W, Aebersold R, Brentnall TA. Quantitative proteomics investigation of pancreatic intraepithelial neoplasia. Electrophoresis. 30: 1132-44. PMID 19373808 DOI: 10.1002/Elps.200800752  0.317
2008 Mirzaei H, Regnier F. Protein:protein aggregation induced by protein oxidation. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 873: 8-14. PMID 18760979 DOI: 10.1016/J.Jchromb.2008.04.025  0.48
2008 Pierce A, Mirzaei H, Muller F, De Waal E, Taylor AB, Leonard S, Van Remmen H, Regnier F, Richardson A, Chaudhuri A. GAPDH is conformationally and functionally altered in association with oxidative stress in mouse models of amyotrophic lateral sclerosis. Journal of Molecular Biology. 382: 1195-210. PMID 18706911 DOI: 10.1016/J.Jmb.2008.07.088  0.4
2008 Mirzaei H, Baena B, Barbas C, Regnier FE. Identification of oxidized proteins in rat plasma using avidin chromatography and tandem mass spectrometry Proteomics. 8: 1516-1527. PMID 18383005 DOI: 10.1002/Pmic.200700363  0.482
2008 Mirzaei H, McBee JK, Watts J, Aebersold R. Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Molecular & Cellular Proteomics : McP. 7: 813-23. PMID 18089551 DOI: 10.1074/Mcp.M700495-Mcp200  0.417
2008 Mirzaei H. Identification of oxidized proteins in rat plasma using avidin chromatography and tandem mass spectrometry (Proteomics 8, 7, (1516-1527) DOI: 10.1002/pmic.200700363) Proteomics. 8: 2764-2771. DOI: 10.1002/Pmic.200890044  0.327
2007 Hulleman JD, Mirzaei H, Guigard E, Taylor KL, Ray SS, Kay CM, Regnier FE, Rochet JC. Destabilization of DJ-1 by familial substitution and oxidative modifications: implications for Parkinson's disease. Biochemistry. 46: 5776-89. PMID 17451229 DOI: 10.1021/Bi7001778  0.414
2007 Mirzaei H, Regnier F. Identification of yeast oxidized proteins: chromatographic top-down approach for identification of carbonylated, fragmented and cross-linked proteins in yeast. Journal of Chromatography. A. 1141: 22-31. PMID 17188699 DOI: 10.1016/J.Chroma.2006.11.009  0.527
2007 Oh C, Zak SH, Mirzaei H, Buck C, Regnier FE, Zhang X. Neural network prediction of peptide separation in strong anion exchange chromatography. Bioinformatics (Oxford, England). 23: 114-8. PMID 17092987 DOI: 10.1093/Bioinformatics/Btl561  0.515
2006 Mirzaei H, Regnier F. Protein-RNA cross-linking in the ribosomes of yeast under oxidative stress. Journal of Proteome Research. 5: 3249-59. PMID 17137326 DOI: 10.1021/Pr060337L  0.475
2006 Pevtsov S, Fedulova I, Mirzaei H, Buck C, Zhang X. Performance evaluation of existing de novo sequencing algorithms. Journal of Proteome Research. 5: 3018-28. PMID 17081053 DOI: 10.1021/Pr060222H  0.347
2006 Mirzaei H, Regnier F. Identification and quantification of protein carbonylation using light and heavy isotope labeled Girard's P reagent. Journal of Chromatography. A. 1134: 122-33. PMID 16996067 DOI: 10.1016/J.Chroma.2006.08.096  0.524
2006 Mirzaei H, Regnier F. Creation of allotypic active sites during oxidative stress. Journal of Proteome Research. 5: 2159-68. PMID 16944927 DOI: 10.1021/Pr060021D  0.449
2006 Yang WC, Mirzaei H, Liu X, Regnier FE. Enhancement of amino acid detection and quantification by electrospray ionization mass spectrometry. Analytical Chemistry. 78: 4702-8. PMID 16808485 DOI: 10.1021/Ac0600510  0.544
2006 Mirzaei H, Regnier F. Enhancing electrospray ionization efficiency of peptides by derivatization. Analytical Chemistry. 78: 4175-83. PMID 16771548 DOI: 10.1021/Ac0602266  0.499
2006 Mirzaei H, Schieler JL, Rochet JC, Regnier F. Identification of rotenone-induced modifications in alpha-synuclein using affinity pull-down and tandem mass spectrometry. Analytical Chemistry. 78: 2422-31. PMID 16579629 DOI: 10.1021/Ac051978N  0.393
2006 Mirzaei H, Regnier F. Enrichment of carbonylated peptides using Girard P reagent and strong cation exchange chromatography. Analytical Chemistry. 78: 770-8. PMID 16448050 DOI: 10.1021/Ac0514220  0.536
2006 Schieler J, Liu F, Mirzaei H, Bernas T, Robinson J, Regnier F, Rochet J. Effect of oxidative stress on α-synuclein aggregation in Parkinson's disease Nanomedicine: Nanotechnology, Biology and Medicine. 2: 317. DOI: 10.1016/J.Nano.2006.10.152  0.364
2006 Schieler JL, Liu F, Mirzaei H, Bernas TS, Robinson JP, Regnier FE, Rochet JC. 4 Saturday, September 9th (10:35)Concurrent Symposium I: Clinical NanomedicineEffect of oxidative stress on α-synuclein aggregation in Parkinson's disease Nanomedicine: Nanotechnology, Biology and Medicine. 2. DOI: 10.1016/J.Nano.2006.10.010  0.359
2005 Mirzaei H, Regnier F. Affinity chromatographic selection of carbonylated proteins followed by identification of oxidation sites using tandem mass spectrometry. Analytical Chemistry. 77: 2386-92. PMID 15828771 DOI: 10.1021/Ac0484373  0.494
2005 Mirzaei H, Regnier F. Structure specific chromatographic selection in targeted proteomics. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 817: 23-34. PMID 15680786 DOI: 10.1016/J.Jchromb.2004.08.028  0.513
2003 Ren D, Penner NA, Slentz BE, Mirzaei H, Regnier F. Evaluating immobilized metal affinity chromatography for the selection of histidine-containing peptides in comparative proteomics. Journal of Proteome Research. 2: 321-9. PMID 12814271 DOI: 10.1021/Pr034006+  0.635
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