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Phoebe Stewart - Publications

Affiliations: 
Vanderbilt University, Nashville, TN 
Area:
General Biophysics, Microbiology Biology
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Atasheva S, Emerson C, Di Paolo NC, Irons E, Gulati N, Stewart P, Shayakhmetov DM. 13. Functional Role of Adenovirus Penton in Modulating In Vivo Properties of Liver-Targeted and Liver-Detargeted Adenovirus Variants Molecular Therapy. 24: S7. DOI: 10.1016/S1525-0016(16)32822-2  0.352
2016 Stewart PL. Adenovirus Structure Adenoviral Vectors For Gene Therapy: Second Edition. 1-26. DOI: 10.1016/B978-0-12-800276-6.00001-2  0.438
2015 Baker BY, Gulati S, Shi W, Wang B, Stewart PL, Palczewski K. Crystallization of proteins from crude bovine rod outer segments. Methods in Enzymology. 557: 439-58. PMID 25950977 DOI: 10.1016/Bs.Mie.2014.11.045  0.31
2013 Villarreal SA, Pattanayek R, Williams DR, Mori T, Qin X, Johnson CH, Egli M, Stewart PL. CryoEM and molecular dynamics of the circadian KaiB-KaiC complex indicates that KaiB monomers interact with KaiC and block ATP binding clefts. Journal of Molecular Biology. 425: 3311-24. PMID 23796516 DOI: 10.1016/J.Jmb.2013.06.018  0.353
2013 Kendall A, Williams D, Bian W, Stewart PL, Stubbs G. Barley stripe mosaic virus: structure and relationship to the tobamoviruses. Virology. 443: 265-70. PMID 23725818 DOI: 10.1016/j.virol.2013.05.010  0.344
2013 Flatt JW, Kim R, Smith JG, Nemerow GR, Stewart PL. An intrinsically disordered region of the adenovirus capsid is implicated in neutralization by human alpha defensin 5. Plos One. 8: e61571. PMID 23620768 DOI: 10.1371/Journal.Pone.0061571  0.321
2013 Shi J, Koteiche HA, McDonald ET, Fox TL, Stewart PL, McHaourab HS. Cryoelectron microscopy analysis of small heat shock protein 16.5 (Hsp16.5) complexes with T4 lysozyme reveals the structural basis of multimode binding. The Journal of Biological Chemistry. 288: 4819-30. PMID 23277356 DOI: 10.1074/Jbc.M112.388132  0.412
2013 Kendall A, Bian W, Maris A, Azzo C, Groom J, Williams D, Shi J, Stewart PL, Wall JS, Stubbs G. A common structure for the potexviruses. Virology. 436: 173-8. PMID 23245732 DOI: 10.1016/J.Virol.2012.11.008  0.464
2012 Nemerow GR, Stewart PL, Reddy VS. Structure of human adenovirus. Current Opinion in Virology. 2: 115-21. PMID 22482707 DOI: 10.1016/J.Coviro.2011.12.008  0.33
2012 Lindert S, Alexander N, Wötzel N, Karaka? M, Stewart PL, Meiler J. EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps. Structure (London, England : 1993). 20: 464-78. PMID 22405005 DOI: 10.1016/J.Str.2012.01.023  0.364
2012 Lindert S, Hofmann T, Wötzel N, Karaka? M, Stewart PL, Meiler J. Ab initio protein modeling into CryoEM density maps using EM-Fold. Biopolymers. 97: 669-77. PMID 22302372 DOI: 10.1002/Bip.22027  0.334
2011 Pattanayek R, Williams DR, Rossi G, Weigand S, Mori T, Johnson CH, Stewart PL, Egli M. Combined SAXS/EM based models of the S. elongatus post-translational circadian oscillator and its interactions with the output His-kinase SasA. Plos One. 6: e23697. PMID 21887298 DOI: 10.1371/Journal.Pone.0023697  0.305
2011 Meiler J, Lindert S, Stewart P. De Novo Atomic-Detail Structure Prediction for Proteins Guided by Medium Resolution Density Maps Microscopy and Microanalysis. 17: 970-971. DOI: 10.1017/S1431927611005721  0.446
2011 Flatt J, Lindert S, Williams D, Shayakhmetov D, Stewart P. CryoEM Structure of the Adenovirus Factor X Complex at Subnanometer Resolution Microscopy and Microanalysis. 17: 106-107. DOI: 10.1017/S1431927611001401  0.343
2011 Kim R, Flatt J, Lindert S, Williams D, Smith J, Nemerow G, Stewart P. CryoEM Structural Analysis of Defensin Neutralization of Adenovirus Microscopy and Microanalysis. 17: 102-103. DOI: 10.1017/S1431927611001383  0.391
2010 Reddy VS, Natchiar SK, Stewart PL, Nemerow GR. Crystal structure of human adenovirus at 3.5 A resolution. Science (New York, N.Y.). 329: 1071-5. PMID 20798318 DOI: 10.1126/Science.1187292  0.402
2010 Smith JG, Silvestry M, Lindert S, Lu W, Nemerow GR, Stewart PL. Insight into the mechanisms of adenovirus capsid disassembly from studies of defensin neutralization. Plos Pathogens. 6: e1000959. PMID 20585634 DOI: 10.1371/Journal.Ppat.1000959  0.32
2010 Stewart P, Lindert S, Silvestry M, Mullen T, Smith J, Nemerow G. CryoEM Studies of Adenovirus-Integrin and Adenovirus-Defensin Complexes Indicate Conformational Changes During Cell Entry Microscopy and Microanalysis. 16: 1062-1063. DOI: 10.1017/S1431927610053596  0.305
2010 Stewart P, Smith J, Silvestry M, Lindert S, Lu W, Nemerow G. Insight into the Mechanism of Defensin Neutralization from CryoEM Structural Studies Microscopy and Microanalysis. 16: 644-645. DOI: 10.1017/S1431927610053584  0.358
2009 Lindert S, Silvestry M, Mullen TM, Nemerow GR, Stewart PL. Cryo-electron microscopy structure of an adenovirus-integrin complex indicates conformational changes in both penton base and integrin. Journal of Virology. 83: 11491-501. PMID 19726496 DOI: 10.1128/Jvi.01214-09  0.428
2009 Lindert S, Staritzbichler R, Wötzel N, Karaka? M, Stewart PL, Meiler J. EM-fold: De novo folding of alpha-helical proteins guided by intermediate-resolution electron microscopy density maps. Structure (London, England : 1993). 17: 990-1003. PMID 19604479 DOI: 10.1016/J.Str.2009.06.001  0.484
2009 Silvestry M, Lindert S, Smith JG, Maier O, Wiethoff CM, Nemerow GR, Stewart PL. Cryo-electron microscopy structure of adenovirus type 2 temperature-sensitive mutant 1 reveals insight into the cell entry defect. Journal of Virology. 83: 7375-83. PMID 19458007 DOI: 10.1128/Jvi.00331-09  0.398
2009 Lindert S, Stewart PL, Meiler J. Hybrid approaches: applying computational methods in cryo-electron microscopy. Current Opinion in Structural Biology. 19: 218-25. PMID 19339173 DOI: 10.1016/J.Sbi.2009.02.010  0.323
2009 Lindert S, Staritzbichler R, Woetzel N, Karakas M, Stewart P, Meiler J. Cryo-EM Guided de novo Protein Fold Elucidation Biophysical Journal. 96: 654a. DOI: 10.1016/J.Bpj.2008.12.3454  0.521
2008 Kendall A, McDonald M, Bian W, Bowles T, Baumgarten SC, Shi J, Stewart PL, Bullitt E, Gore D, Irving TC, Havens WM, Ghabrial SA, Wall JS, Stubbs G. Structure of flexible filamentous plant viruses. Journal of Virology. 82: 9546-54. PMID 18667514 DOI: 10.1128/Jvi.00895-08  0.443
2008 Shi J, Williams DR, Stewart PL. A Script-Assisted Microscopy (SAM) package to improve data acquisition rates on FEI Tecnai electron microscopes equipped with Gatan CCD cameras. Journal of Structural Biology. 164: 166-9. PMID 18621546 DOI: 10.1016/J.Jsb.2008.05.011  0.402
2008 Williams DR, Lee KJ, Shi J, Chen DJ, Stewart PL. Cryo-EM structure of the DNA-dependent protein kinase catalytic subunit at subnanometer resolution reveals alpha helices and insight into DNA binding. Structure (London, England : 1993). 16: 468-77. PMID 18334221 DOI: 10.1016/J.Str.2007.12.014  0.459
2008 Stubbs G, Kendall A, McDonald M, Bian W, Bowles T, Baumgarten S, McCullough I, Shi J, Stewart P, Bullitt E, Gore D, Ghabrial S. Flexible filamentous virus structures from fiber diffraction Powder Diffraction. 23: 113-117. DOI: 10.1154/1.2912331  0.492
2007 Stubbs G, Kendall A, McDonald M, Bian W, McCullough I, Shi J, Stewart P, Bullitt E, Gore D, Ghabrial S. D-27 Invited—Flexible Filamentous Virus Structures from Fiber Diffraction Powder Diffraction. 22: 181-181. DOI: 10.1154/1.2754440  0.472
2007 Dulaney W, Mullen T, Nemerow G, Stewart P. CryoEM Structure of Adenovirus 12 in Complex with αVβ5 Integrin Microscopy and Microanalysis. 13. DOI: 10.1017/S1431927607072042  0.353
2006 Shi J, Koteiche HA, McHaourab HS, Stewart PL. Cryoelectron microscopy and EPR analysis of engineered symmetric and polydisperse Hsp16.5 assemblies reveals determinants of polydispersity and substrate binding. The Journal of Biological Chemistry. 281: 40420-8. PMID 17079234 DOI: 10.1074/Jbc.M608322200  0.448
2006 Saban SD, Silvestry M, Nemerow GR, Stewart PL. Visualization of alpha-helices in a 6-angstrom resolution cryoelectron microscopy structure of adenovirus allows refinement of capsid protein assignments. Journal of Virology. 80: 12049-59. PMID 17005667 DOI: 10.1128/Jvi.01652-06  0.559
2005 Saban SD, Nepomuceno RR, Gritton LD, Nemerow GR, Stewart PL. CryoEM structure at 9A resolution of an adenovirus vector targeted to hematopoietic cells. Journal of Molecular Biology. 349: 526-37. PMID 15890367 DOI: 10.1016/J.Jmb.2005.04.034  0.567
2004 Mikyas Y, Makabi M, Raval-Fernandes S, Harrington L, Kickhoefer VA, Rome LH, Stewart PL. Cryoelectron microscopy imaging of recombinant and tissue derived vaults: localization of the MVP N termini and VPARP. Journal of Molecular Biology. 344: 91-105. PMID 15504404 DOI: 10.1016/J.Jmb.2004.09.021  0.363
2000 Kong LB, Siva AC, Kickhoefer VA, Rome LH, Stewart PL. RNA location and modeling of a WD40 repeat domain within the vault Rna. 6: 890-900. PMID 10864046 DOI: 10.1017/S1355838200000157  0.318
2000 Haley DA, Bova MP, Huang QL, Mchaourab HS, Stewart PL. Small heat-shock protein structures reveal a continuum from symmetric to variable assemblies Journal of Molecular Biology. 298: 261-272. PMID 10764595 DOI: 10.1006/Jmbi.2000.3657  0.322
1999 Bova MP, Yaron O, Huang Q, Ding L, Haley DA, Stewart PL, Horwitz J. Mutation R120G in alphaB-crystallin, which is linked to a desmin-related myopathy, results in an irregular structure and defective chaperone-like function. Proceedings of the National Academy of Sciences of the United States of America. 96: 6137-42. PMID 10339554 DOI: 10.1073/Pnas.96.11.6137  0.318
1998 Haley DA, Horwitz J, Stewart PL. The small heat-shock protein, alphaB-crystallin, has a variable quaternary structure. Journal of Molecular Biology. 277: 27-35. PMID 9514758 DOI: 10.1006/Jmbi.1997.1611  0.397
1993 Stewart PL, Burnett RM. Adenovirus structure as revealed by x-ray crystallography, electron microscopy, and difference imaging Japanese Journal of Applied Physics. 32: 1342-1347. DOI: 10.1143/Jjap.32.1342  0.375
1991 Stewart PL, Burnett RM, Cyrklaff M, Fuller SD. Image reconstruction reveals the complex molecular organization of adenovirus Cell. 67: 145-154. PMID 1913814 DOI: 10.1016/0092-8674(91)90578-M  0.383
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