| Year |
Citation |
Score |
| 2023 |
Woo BJ, Moussavi-Baygi R, Karner H, Karimzadeh M, Garcia K, Joshi T, Yin K, Navickas A, Gilbert LA, Wang B, Asgharian H, Feng FY, Goodarzi H. Integrative identification of non-coding regulatory regions driving metastatic prostate cancer. Biorxiv : the Preprint Server For Biology. PMID 37398273 DOI: 10.1101/2023.04.14.535921 |
0.746 |
|
| 2023 |
Culbertson B, Garcia K, Markett D, Asgharian H, Chen L, Fish L, Navickas A, Yu J, Woo B, Nanda AS, Choi B, Zhou S, Rabinowitz J, Goodarzi H. A sense-antisense RNA interaction promotes breast cancer metastasis via regulation of NQO1 expression. Nature Cancer. PMID 37169843 DOI: 10.1038/s43018-023-00554-7 |
0.762 |
|
| 2023 |
Navickas A, Asgharian H, Winkler J, Fish L, Garcia K, Markett D, Dodel M, Culbertson B, Miglani S, Joshi T, Yin K, Nguyen P, Zhang S, Stevers N, Hwang HW, ... ... Goodarzi H, et al. An mRNA processing pathway suppresses metastasis by governing translational control from the nucleus. Nature Cell Biology. PMID 37156909 DOI: 10.1038/s41556-023-01141-9 |
0.769 |
|
| 2022 |
Earnest-Noble LB, Hsu D, Chen S, Asgharian H, Nandan M, Passarelli MC, Goodarzi H, Tavazoie SF. Two isoleucyl tRNAs that decode synonymous codons divergently regulate breast cancer metastatic growth by controlling translation of proliferation-regulating genes. Nature Cancer. 3: 1484-1497. PMID 36510010 DOI: 10.1038/s43018-022-00469-9 |
0.773 |
|
| 2022 |
Furuya H, Sasaki Y, Chen R, Peres R, Hokutan K, Murakami K, Kim N, Chan OTM, Pagano I, Dyrskjøt L, Jensen JB, Malmstrom PU, Segersten U, Sun Y, Arab A, ... Goodarzi H, et al. PAI-1 is a potential transcriptional silencer that supports bladder cancer cell activity. Scientific Reports. 12: 12186. PMID 35842542 DOI: 10.1038/s41598-022-16518-3 |
0.316 |
|
| 2022 |
Xiao J, McGill JR, Nasir A, Lekan A, Johnson B, Wilkins DJ, Pearson GW, Tanner K, Goodarzi H, Glasgow E, Schlegel R, Agarwal S. Identifying drivers of breast cancer metastasis in progressively invasive subpopulations of zebrafish-xenografted MDA-MB-231. Molecular Biomedicine. 3: 16. PMID 35614362 DOI: 10.1186/s43556-022-00080-5 |
0.337 |
|
| 2022 |
Passarelli MC, Pinzaru AM, Asgharian H, Liberti MV, Heissel S, Molina H, Goodarzi H, Tavazoie SF. Leucyl-tRNA synthetase is a tumour suppressor in breast cancer and regulates codon-dependent translation dynamics. Nature Cell Biology. 24: 307-315. PMID 35288656 DOI: 10.1038/s41556-022-00856-5 |
0.761 |
|
| 2021 |
Xu Y, Huangyang P, Wang Y, Xue L, Devericks E, Nguyen HG, Yu X, Oses-Prieto JA, Burlingame AL, Miglani S, Goodarzi H, Ruggero D. ERα is an RNA-binding protein sustaining tumor cell survival and drug resistance. Cell. PMID 34559986 DOI: 10.1016/j.cell.2021.08.036 |
0.382 |
|
| 2021 |
Chen WC, To MD, Westcott PMK, Delrosario R, Kim IJ, Philips M, Tran Q, Bollam SR, Goodarzi H, Bayani N, Mirzoeva O, Balmain A. Targeting KRAS4A splicing through the RBM39/DCAF15 pathway inhibits cancer stem cells. Nature Communications. 12: 4288. PMID 34257283 DOI: 10.1038/s41467-021-24498-7 |
0.309 |
|
| 2021 |
Kuzuoglu-Ozturk D, Hu Z, Rama M, Devericks E, Weiss J, Chiang GG, Worland ST, Brenner SE, Goodarzi H, Gilbert LA, Ruggero D. Revealing molecular pathways for cancer cell fitness through a genetic screen of the cancer translatome. Cell Reports. 35: 109321. PMID 34192540 DOI: 10.1016/j.celrep.2021.109321 |
0.327 |
|
| 2021 |
Fish L, Khoroshkin M, Navickas A, Garcia K, Culbertson B, Hänisch B, Zhang S, Nguyen HCB, Soto LM, Dermit M, Mardakheh FK, Molina H, Alarcón C, Najafabadi HS, Goodarzi H. A prometastatic splicing program regulated by SNRPA1 interactions with structured RNA elements. Science (New York, N.Y.). 372. PMID 33986153 DOI: 10.1126/science.abc7531 |
0.402 |
|
| 2020 |
Huh D, Passarelli MC, Gao J, Dusmatova SN, Goin C, Fish L, Pinzaru AM, Molina H, Ren Z, McMillan EA, Asgharian H, Goodarzi H, Tavazoie SF. A stress-induced tyrosine-tRNA depletion response mediates codon-based translational repression and growth suppression. The Embo Journal. e106696. PMID 33346941 DOI: 10.15252/embj.2020106696 |
0.743 |
|
| 2020 |
Samuel RM, Majd H, Richter MN, Ghazizadeh Z, Zekavat SM, Navickas A, Ramirez JT, Asgharian H, Simoneau CR, Bonser LR, Koh KD, Garcia-Knight M, Tassetto M, Sunshine S, Farahvashi S, ... ... Goodarzi H, et al. Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men. Cell Stem Cell. PMID 33232663 DOI: 10.1016/j.stem.2020.11.009 |
0.711 |
|
| 2020 |
Tavora B, Mederer T, Wessel KJ, Ruffing S, Sadjadi M, Missmahl M, Ostendorf BN, Liu X, Kim JY, Olsen O, Welm AL, Goodarzi H, Tavazoie SF. Tumoural activation of TLR3-SLIT2 axis in endothelium drives metastasis. Nature. PMID 32999457 DOI: 10.1038/s41586-020-2774-y |
0.346 |
|
| 2020 |
Zhao SG, Chen WS, Li H, Foye A, Zhang M, Sjöström M, Aggarwal R, Playdle D, Liao A, Alumkal JJ, Das R, Chou J, Hua JT, Barnard TJ, Bailey AM, ... ... Goodarzi H, et al. The DNA methylation landscape of advanced prostate cancer. Nature Genetics. PMID 32661416 DOI: 10.1038/S41588-020-0648-8 |
0.389 |
|
| 2020 |
Yu J, Navickas A, Asgharian H, Culbertson B, Fish L, Garcia K, Olegario JP, Dermit M, Dodel M, Hanisch B, Luo Y, Weinberg EM, Dienstmann R, Warren RS, Mardakheh FK, ... Goodarzi H, et al. RBMS1 suppresses colon cancer metastasis through targeted stabilization of its mRNA regulon. Cancer Discovery. PMID 32513775 DOI: 10.1158/2159-8290.Cd-19-1375 |
0.778 |
|
| 2020 |
Ghazizadeh Z, Majd H, Richter M, Samuel R, Zekavat SM, Asgharian H, Farahvashi S, Kalantari A, Ramirez J, Zhao H, Natarajan P, Goodarzi H, Fattahi F. Androgen Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men. Biorxiv : the Preprint Server For Biology. PMID 32511360 DOI: 10.1101/2020.05.12.091082 |
0.712 |
|
| 2020 |
Leidal AM, Huang HH, Marsh T, Solvik T, Zhang D, Ye J, Kai F, Goldsmith J, Liu JY, Huang YH, Monkkonen T, Vlahakis A, Huang EJ, Goodarzi H, Yu L, et al. The LC3-conjugation machinery specifies the loading of RNA-binding proteins into extracellular vesicles. Nature Cell Biology. PMID 31932738 DOI: 10.1038/S41556-019-0450-Y |
0.37 |
|
| 2020 |
Goodarzi H, Fish L, Culbertson B. Abstract PD8-07: A pro-metastatic alternative splicing program that drives breast cancer progression Cancer Research. 80. DOI: 10.1158/1538-7445.Sabcs19-Pd8-07 |
0.492 |
|
| 2019 |
Yamaguchi N, Weinberg EM, Nguyen A, Liberti MV, Goodarzi H, Janjigian YY, Paty PB, Saltz LB, Kingham TP, Loo JM, Stanchina E, Tavazoie S. PCK1 and DHODH drive colorectal cancer liver metastatic colonization and hypoxic growth by promoting nucleotide synthesis. Elife. 8. PMID 31841108 DOI: 10.7554/Elife.52135 |
0.333 |
|
| 2019 |
Fish L, Navickas A, Culbertson B, Xu Y, Nguyen HCB, Zhang S, Hochman M, Okimoto R, Dill BD, Molina H, Najafabadi HS, Alarcón C, Ruggero D, Goodarzi H. Nuclear TARBP2 Drives Oncogenic Dysregulation of RNA Splicing and Decay. Molecular Cell. PMID 31300274 DOI: 10.1016/J.Molcel.2019.06.001 |
0.464 |
|
| 2019 |
Litterman AJ, Kageyama R, Le Tonqueze O, Zhao W, Gagnon JD, Goodarzi H, Erle DJ, Ansel KM. A massively parallel 3' UTR reporter assay reveals relationships between nucleotide content, sequence conservation, and mRNA destabilization. Genome Research. PMID 31152051 DOI: 10.1101/Gr.242552.118 |
0.37 |
|
| 2019 |
Mauer J, Sindelar M, Despic V, Guez T, Hawley BR, Vasseur JJ, Rentmeister A, Gross SS, Pellizzoni L, Debart F, Goodarzi H, Jaffrey SR. FTO controls reversible mAm RNA methylation during snRNA biogenesis. Nature Chemical Biology. PMID 30778204 DOI: 10.1038/S41589-019-0231-8 |
0.322 |
|
| 2019 |
Yamaguchi N, Weinberg EM, Nguyen A, Liberti MV, Goodarzi H, Janjigian YY, Paty PB, Saltz LB, Kingham TP, Loo JM, Stanchina Ed, Tavazoie SF. Author response: PCK1 and DHODH drive colorectal cancer liver metastatic colonization and hypoxic growth by promoting nucleotide synthesis Elife. DOI: 10.7554/Elife.52135.Sa2 |
0.323 |
|
| 2019 |
Goodarzi H, Warren RS, Yu J, Fish L. A regulatory program that promotes metastasis in colorectal cancer (CRC) through modulation of mRNA stability. Journal of Clinical Oncology. 37: 3523-3523. DOI: 10.1200/Jco.2019.37.15_Suppl.3523 |
0.447 |
|
| 2018 |
Fish L, Zhang S, Yu JX, Culbertson B, Zhou AY, Goga A, Goodarzi H. Cancer cells exploit an orphan RNA to drive metastatic progression. Nature Medicine. PMID 30397354 DOI: 10.1038/S41591-018-0230-4 |
0.501 |
|
| 2018 |
Quigley DA, Dang HX, Zhao SG, Lloyd P, Aggarwal R, Alumkal JJ, Foye A, Kothari V, Perry MD, Bailey AM, Playdle D, Barnard TJ, Zhang L, Zhang J, Youngren JF, ... ... Goodarzi H, et al. Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer. Cell. 175: 889. PMID 30340047 DOI: 10.1016/J.Cell.2018.10.019 |
0.316 |
|
| 2018 |
Quigley DA, Dang HX, Zhao SG, Lloyd P, Aggarwal R, Alumkal JJ, Foye A, Kothari V, Perry MD, Bailey AM, Playdle D, Barnard TJ, Zhang L, Zhang J, Youngren JF, ... ... Goodarzi H, et al. Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer. Cell. PMID 30033370 DOI: 10.1016/J.Cell.2018.06.039 |
0.403 |
|
| 2018 |
Knott SRV, Wagenblast E, Khan S, Kim SY, Soto M, Wagner M, Turgeon MO, Fish L, Erard N, Gable AL, Maceli AR, Dickopf S, Papachristou EK, D'Santos CS, Carey LA, ... ... Goodarzi H, et al. Asparagine bioavailability governs metastasis in a model of breast cancer. Nature. PMID 29414946 DOI: 10.1038/Nature25465 |
0.435 |
|
| 2017 |
Alkallas R, Fish L, Goodarzi H, Najafabadi HS. Inference of RNA decay rate from transcriptional profiling highlights the regulatory programs of Alzheimer's disease. Nature Communications. 8: 909. PMID 29030541 DOI: 10.1038/S41467-017-00867-Z |
0.384 |
|
| 2017 |
Goodarzi H. Charting the "unknown unknowns" of cancer progression. Science Translational Medicine. 9. PMID 28747512 DOI: 10.1126/Scitranslmed.Aao0959 |
0.359 |
|
| 2016 |
Lee H, Goodarzi H, Tavazoie Corresponding Author SF, Alarcón CR. TMEM2 is a SOX4 regulated gene that mediates metastatic migration and invasion in breast cancer. Cancer Research. PMID 27328729 DOI: 10.1158/0008-5472.Can-15-2322 |
0.464 |
|
| 2016 |
Goodarzi H, Nguyen HC, Zhang S, Dill BD, Molina H, Tavazoie SF. Modulated Expression of Specific tRNAs Drives Gene Expression and Cancer Progression. Cell. 165: 1416-27. PMID 27259150 DOI: 10.1016/J.Cell.2016.05.046 |
0.49 |
|
| 2016 |
Nguyen A, Yoshida M, Goodarzi H, Tavazoie SF. Highly variable cancer subpopulations that exhibit enhanced transcriptome variability and metastatic fitness. Nature Communications. 7: 11246. PMID 27138336 DOI: 10.1038/Ncomms11246 |
0.432 |
|
| 2016 |
Hwang HW, Park CY, Goodarzi H, Fak JJ, Mele A, Moore MJ, Saito Y, Darnell RB. PAPERCLIP Identifies MicroRNA Targets and a Role of CstF64/64tau in Promoting Non-canonical poly(A) Site Usage. Cell Reports. PMID 27050522 DOI: 10.1016/J.Celrep.2016.03.023 |
0.371 |
|
| 2016 |
Fish L, Pencheva N, Goodarzi H, Tran H, Yoshida M, Tavazoie SF. Muscleblind-like 1 suppresses breast cancer metastatic colonization and stabilizes metastasis suppressor transcripts. Genes & Development. 30: 386-98. PMID 26883358 DOI: 10.1101/Gad.270645.115 |
0.705 |
|
| 2015 |
Alarcón CR, Goodarzi H, Lee H, Liu X, Tavazoie S, Tavazoie SF. HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events. Cell. PMID 26321680 DOI: 10.1016/J.Cell.2015.08.011 |
0.633 |
|
| 2015 |
Furlow PW, Zhang S, Soong TD, Halberg N, Goodarzi H, Mangrum C, Wu YG, Elemento O, Tavazoie SF. Mechanosensitive pannexin-1 channels mediate microvascular metastatic cell survival. Nature Cell Biology. PMID 26098574 DOI: 10.1038/ncb3194 |
0.684 |
|
| 2015 |
Goodarzi H, Liu X, Nguyen HC, Zhang S, Fish L, Tavazoie SF. Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement. Cell. 161: 790-802. PMID 25957686 DOI: 10.1016/J.Cell.2015.02.053 |
0.708 |
|
| 2015 |
Alarcón CR, Lee H, Goodarzi H, Halberg N, Tavazoie SF. N6-methyladenosine marks primary microRNAs for processing. Nature. 519: 482-5. PMID 25799998 DOI: 10.1038/Nature14281 |
0.594 |
|
| 2014 |
Goodarzi H, Tavazoie SF, Tavazoie S. TARBP2 binding structured RNA elements drives metastasis. Cell Cycle (Georgetown, Tex.). 13: 2799-800. PMID 25486461 DOI: 10.4161/15384101.2014.954453 |
0.723 |
|
| 2014 |
Goodarzi H, Zhang S, Buss CG, Fish L, Tavazoie S, Tavazoie SF. Metastasis-suppressor transcript destabilization through TARBP2 binding of mRNA hairpins. Nature. 513: 256-60. PMID 25043050 DOI: 10.1038/Nature13466 |
0.72 |
|
| 2014 |
Oikonomou P, Goodarzi H, Tavazoie S. Systematic identification of regulatory elements in conserved 3' UTRs of human transcripts. Cell Reports. 7: 281-92. PMID 24656821 DOI: 10.1016/J.Celrep.2014.03.001 |
0.761 |
|
| 2014 |
Freddolino PL, Goodarzi H, Tavazoie S. Revealing the genetic basis of natural bacterial phenotypic divergence. Journal of Bacteriology. 196: 825-39. PMID 24317396 DOI: 10.1128/Jb.01039-13 |
0.694 |
|
| 2013 |
Chiu IM, Morimoto ET, Goodarzi H, Liao JT, O'Keeffe S, Phatnani HP, Muratet M, Carroll MC, Levy S, Tavazoie S, Myers RM, Maniatis T. A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model. Cell Reports. 4: 385-401. PMID 23850290 DOI: 10.1016/J.Celrep.2013.06.018 |
0.619 |
|
| 2012 |
Freddolino PL, Goodarzi H, Tavazoie S. Fitness landscape transformation through a single amino acid change in the rho terminator. Plos Genetics. 8: e1002744. PMID 22693458 DOI: 10.1371/Journal.Pgen.1002744 |
0.718 |
|
| 2012 |
Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S. Systematic discovery of structural elements governing stability of mammalian messenger RNAs. Nature. 485: 264-8. PMID 22495308 DOI: 10.1038/Nature11013 |
0.763 |
|
| 2011 |
Korpal M, Ell BJ, Buffa FM, Ibrahim T, Blanco MA, Celià -Terrassa T, Mercatali L, Khan Z, Goodarzi H, Hua Y, Wei Y, Hu G, Garcia BA, Ragoussis J, Amadori D, et al. Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization. Nature Medicine. 17: 1101-8. PMID 21822286 DOI: 10.1038/Nm.2401 |
0.327 |
|
| 2010 |
Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S. Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. Molecular Systems Biology. 6: 378. PMID 20531407 DOI: 10.1038/Msb.2010.33 |
0.584 |
|
| 2009 |
Goodarzi H, Elemento O, Tavazoie S. Revealing global regulatory perturbations across human cancers. Molecular Cell. 36: 900-11. PMID 20005852 DOI: 10.1016/J.Molcel.2009.11.016 |
0.722 |
|
| 2009 |
Najafabadi HS, Goodarzi H, Salavati R. Universal function-specificity of codon usage. Nucleic Acids Research. 37: 7014-23. PMID 19773421 DOI: 10.1093/Nar/Gkp792 |
0.381 |
|
| 2009 |
Goodarzi H, Hottes AK, Tavazoie S. Global discovery of adaptive mutations. Nature Methods. 6: 581-3. PMID 19597501 DOI: 10.1038/Nmeth.1352 |
0.597 |
|
| 2009 |
Amini S, Goodarzi H, Tavazoie S. Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli. Plos Pathogens. 5: e1000432. PMID 19436718 DOI: 10.1371/Journal.Ppat.1000432 |
0.594 |
|
| 2008 |
Goodarzi H, Torabi N, Najafabadi HS, Archetti M. Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons. Gene. 407: 30-41. PMID 17977670 DOI: 10.1016/J.Gene.2007.09.020 |
0.302 |
|
| 2006 |
Marashi SA, Goodarzi H, Sadeghi M, Eslahchi C, Pezeshk H. Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. Computational Biology and Chemistry. 30: 50-7. PMID 16386465 DOI: 10.1016/J.Compbiolchem.2005.10.009 |
0.31 |
|
| 2006 |
Najafabadi HS, Goodarzi H, Torabi N, Banihosseini SS. Applying a neural network to predict the thermodynamic parameters for an expanded nearest-neighbor model. Journal of Theoretical Biology. 238: 657-65. PMID 16061260 DOI: 10.1016/J.Jtbi.2005.06.014 |
0.308 |
|
| 2005 |
Goodarzi H, Shateri Najafabadi H, Torabi N. On the coevolution of genes and genetic code. Gene. 362: 133-40. PMID 16213111 DOI: 10.1016/J.Gene.2005.08.005 |
0.315 |
|
| 2005 |
Goodarzi H, Najafabadi HS, Nejad HA, Torabi N. The impact of including tRNA content on the optimality of the genetic code. Bulletin of Mathematical Biology. 67: 1355-68. PMID 16005951 DOI: 10.1016/J.Bulm.2005.03.002 |
0.321 |
|
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