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Jeremy P. Koelmel - Publications

Affiliations: 
2017 Chemistry University of Florida, Gainesville, Gainesville, FL, United States 
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Koelmel JP, Kummer M, Chevallier O, Hindle R, Hunt K, Camacho CG, Abril N, Gill EL, Beecher CWW, Garrett TJ, Yost RA, Townsend TG, Klein C, Rennie EE, Bowden JA, et al. Expanding Per- and Polyfluoroalkyl Substances Coverage in Nontargeted Analysis Using Data-Independent Analysis and IonDecon. Journal of the American Society For Mass Spectrometry. PMID 37751518 DOI: 10.1021/jasms.3c00244  0.66
2022 Koelmel JP, Xie H, Price EJ, Lin EZ, Manz KE, Stelben P, Paige MK, Papazian S, Okeme J, Jones DP, Barupal D, Bowden JA, Rostkowski P, Pennell KD, Nikiforov V, et al. An actionable annotation scoring framework for gas chromatography-high-resolution mass spectrometry. Exposome. 2: osac007. PMID 36483216 DOI: 10.1093/exposome/osac007  0.603
2022 McDonald JG, Ejsing CS, Kopczynski D, Holčapek M, Aoki J, Arita M, Arita M, Baker ES, Bertrand-Michel J, Bowden JA, Brügger B, Ellis SR, Fedorova M, Griffiths WJ, Han X, ... ... Koelmel JP, et al. Introducing the Lipidomics Minimal Reporting Checklist. Nature Metabolism. PMID 35934691 DOI: 10.1038/s42255-022-00628-3  0.723
2022 Savvaides T, Koelmel JP, Zhou Y, Lin EZ, Stelben P, Aristizabal-Henao JJ, Bowden JA, Godri Pollitt KJ. Prevalence and Implications of Per- and Polyfluoroalkyl Substances (PFAS) in Settled Dust. Current Environmental Health Reports. PMID 34985714 DOI: 10.1007/s40572-021-00326-4  0.484
2021 Koelmel JP, Tan WY, Li Y, Bowden JA, Ahmadireskety A, Patt AC, Orlicky DJ, Mathé E, Kroeger NM, Thompson DC, Cochran JA, Golla JP, Kandyliari A, Chen Y, Charkoftaki G, et al. Lipidomics and Redox Lipidomics Indicate Early Stage Alcohol-Induced Liver Damage. Hepatology Communications. PMID 34811964 DOI: 10.1002/hep4.1825  0.66
2021 da Silva KM, Iturrospe E, Heyrman J, Koelmel JP, Cuykx M, Vanhaecke T, Covaci A, van Nuijs ALN. Optimization of a liquid chromatography-ion mobility-high resolution mass spectrometry platform for untargeted lipidomics and application to HepaRG cell extracts. Talanta. 235: 122808. PMID 34517665 DOI: 10.1016/j.talanta.2021.122808  0.337
2021 Köfeler HC, Eichmann TO, Ahrends R, Bowden JA, Danne-Rasche N, Dennis EA, Fedorova M, Griffiths WJ, Han X, Hartler J, Holčapek M, Jirásko R, Koelmel JP, Ejsing CS, Liebisch G, et al. Quality control requirements for the correct annotation of lipidomics data. Nature Communications. 12: 4771. PMID 34362906 DOI: 10.1038/s41467-021-24984-y  0.5
2021 Koelmel JP, Aristizabal-Henao JJ, Ni Z, Federova M, Kato S, Otoki Y, Nakagawa K, Lin EZ, Godri Pollitt KJ, Vasiliou V, Guingab JD, Garrett TJ, Williams TL, Bowden JA, Penumetcha M. A Novel Technique for Redox Lipidomics Using Mass Spectrometry: Application on Vegetable Oils Used to Fry Potatoes. Journal of the American Society For Mass Spectrometry. PMID 34096708 DOI: 10.1021/jasms.1c00150  0.536
2021 Koelmel JP, Stelben P, McDonough CA, Dukes DA, Aristizabal-Henao JJ, Nason SL, Li Y, Sternberg S, Lin E, Beckmann M, Williams AJ, Draper J, Finch JP, Munk JK, Deigl C, et al. FluoroMatch 2.0-making automated and comprehensive non-targeted PFAS annotation a reality. Analytical and Bioanalytical Chemistry. PMID 34014358 DOI: 10.1007/s00216-021-03392-7  0.586
2021 Jain D, Torres R, Celli R, Koelmel J, Charkoftaki G, Vasiliou V. Evolution of the liver biopsy and its future. Translational Gastroenterology and Hepatology. 6: 20. PMID 33824924 DOI: 10.21037/Tgh.2020.04.01  0.31
2020 Nason SL, Koelmel J, Zuverza-Mena N, Stanley C, Tamez C, Bowden JA, Godri Pollitt KJ. Software Comparison for Nontargeted Analysis of PFAS in AFFF-Contaminated Soil. Journal of the American Society For Mass Spectrometry. PMID 33226225 DOI: 10.1021/jasms.0c00261  0.556
2020 Koelmel JP, Paige MK, Aristizabal-Henao JJ, Robey NM, Nason SL, Stelben PJ, Li Y, Kroeger NM, Napolitano MP, Savvaides T, Vasiliou V, Rostkowski P, Garrett TJ, Lin E, Deigl C, et al. Toward Comprehensive Per- and Polyfluoroalkyl Substances Annotation Using FluoroMatch Software and Intelligent High-Resolution Tandem Mass Spectrometry Acquisition. Analytical Chemistry. 92: 11186-11194. PMID 32806901 DOI: 10.1021/Acs.Analchem.0C01591  0.77
2020 Sara JR, Luus-Powell WJ, Fogelson SB, Botha H, Guillette TC, Smit WJ, Hoffman A, Kunutu KD, Koelmel JP, Bowden JA. A histological evaluation of pansteatitis-affected Mozambique tilapia, Oreochromis mossambicus (Peters 1852), from different geographical locations in South Africa. Journal of Fish Diseases. PMID 32740987 DOI: 10.1111/Jfd.13184  0.549
2020 Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, et al. Author Correction: Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood. Scientific Reports. 10: 12524. PMID 32694614 DOI: 10.1038/S41598-020-69601-Y  0.537
2020 Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, et al. Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood. Scientific Reports. 10: 10902. PMID 32616744 DOI: 10.1038/S41598-020-67709-9  0.548
2020 Tsugawa H, Ikeda K, Takahashi M, Satoh A, Mori Y, Uchino H, Okahashi N, Yamada Y, Tada I, Bonini P, Higashi Y, Okazaki Y, Zhou Z, Zhu ZJ, Koelmel J, et al. A lipidome atlas in MS-DIAL 4. Nature Biotechnology. PMID 32541957 DOI: 10.1038/S41587-020-0531-2  0.467
2020 Ulmer CZ, Koelmel JP, Jones CM, Garrett TJ, Aristizabal-Henao JJ, Vesper HW, Bowden JA. A Review of Efforts to Improve Lipid Stability during Sample Preparation and Standardization Efforts to Ensure Accuracy in the Reporting of Lipid Measurements. Lipids. PMID 32519378 DOI: 10.1002/Lipd.12263  0.799
2020 Koelmel JP, Napolitano MP, Ulmer CZ, Vasiliou V, Garrett TJ, Yost RA, Prasad MNV, Godri Pollitt KJ, Bowden JA. Environmental lipidomics: understanding the response of organisms and ecosystems to a changing world. Metabolomics : Official Journal of the Metabolomic Society. 16: 56. PMID 32307636 DOI: 10.1007/S11306-020-01665-3  0.736
2020 Koelmel JP, Li X, Stow SM, Sartain MJ, Murali A, Kemperman R, Tsugawa H, Takahashi M, Vasiliou V, Bowden JA, Yost RA, Garrett TJ, Kitagawa N. Lipid Annotator: Towards Accurate Annotation in Non-Targeted Liquid Chromatography High-Resolution Tandem Mass Spectrometry (LC-HRMS/MS) Lipidomics Using A Rapid and User-Friendly Software. Metabolites. 10. PMID 32178227 DOI: 10.3390/Metabo10030101  0.758
2019 Koelmel JP, Campbell JE, Guingab-Cagmat J, Meke L, Garrett TJ, Stingl U. Re-modeling of foliar membrane lipids in a seagrass allows for growth in phosphorus-deplete conditions. Plos One. 14: e0218690. PMID 31774814 DOI: 10.1371/Journal.Pone.0218690  0.407
2019 Gill EL, Koelmel JP, Meke L, Yost RA, Garrett TJ, Okun MS, Flores C, Vedam-Mai V. An Ultra High Performance Liquid Chromatography-High Resolution Mass Spectrometry Metabolomics and Lipidomics Study of Stool from Transgenic Parkinson's Disease Mice Following Immunotherapy. Journal of Proteome Research. PMID 31713431 DOI: 10.1021/Acs.Jproteome.9B00605  0.538
2019 Koelmel JP, Cochran JA, Ulmer CZ, Levy AJ, Patterson RE, Olsen BC, Yost RA, Bowden JA, Garrett TJ. Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values. Bmc Bioinformatics. 20: 217. PMID 31035918 DOI: 10.1186/S12859-019-2803-8  0.808
2019 Jeanne Dit Fouque K, Ramirez CE, Lewis RL, Koelmel JP, Garrett TJ, Yost RA, Fernandez-Lima F. Effective Liquid Chromatography - Trapped Ion Mobility Spectrometry - Mass Spectrometry Separation of Isomeric Lipid Species. Analytical Chemistry. PMID 30896930 DOI: 10.1021/Acs.Analchem.8B04979  0.665
2019 Koelmel JP, Ulmer CZ, Fogelson S, Jones CM, Botha H, Bangma JT, Guillette TC, Luus-Powell WJ, Sara JR, Smit WJ, Albert K, Miller HA, Guillette MP, Olsen BC, Cochran JA, et al. Lipidomics for wildlife disease etiology and biomarker discovery: a case study of pansteatitis outbreak in South Africa. Metabolomics : Official Journal of the Metabolomic Society. 15: 38. PMID 30838461 DOI: 10.1007/S11306-019-1490-9  0.771
2018 Bowden JA, Ulmer CZ, Jones CM, Koelmel JP, Yost RA. NIST lipidomics workflow questionnaire: an assessment of community-wide methodologies and perspectives. Metabolomics : Official Journal of the Metabolomic Society. 14: 53. PMID 30830346 DOI: 10.1007/S11306-018-1340-1  0.744
2018 Gathungu RM, Larrea P, SniatynskI MJ, Marur VR, Bowden JA, Koelmel JP, Starke-Reed P, Hubbard VS, Kristal BS. Optimization of ESI-Source Parameters for Lipidomics Reduces Misannotation of In-Source Fragments as Precursor Ions. Analytical Chemistry. PMID 30265528 DOI: 10.1021/Acs.Analchem.8B03436  0.648
2018 Kalavalapalli S, Bril F, Koelmel JP, Abdo K, Guingab J, Andrews P, Li WY, Jose D, Yost RA, Frye RF, Garrett TJ, Cusi K, Sunny NE. Pioglitazone improves hepatic mitochondrial function in a mouse model of nonalcoholic steatohepatitis. American Journal of Physiology. Endocrinology and Metabolism. PMID 29634314 DOI: 10.1152/Ajpendo.00023.2018  0.529
2018 Koelmel JP, Jones CM, Ulmer CZ, Garrett TJ, Yost RA, Schock TB, Bowden JA. Examining heat treatment for stabilization of the lipidome. Bioanalysis. PMID 29451398 DOI: 10.4155/Bio-2017-0209  0.763
2018 Gill EL, Koelmel JP, Yost RA, Okun MS, Vedam-Mai V, Garrett TJ. Mass Spectrometric Methodologies for Investigating the Metabolic Signatures of Parkinson's disease: Current Progress and Future Perspectives. Analytical Chemistry. PMID 29384654 DOI: 10.1021/Acs.Analchem.7B04084  0.519
2017 Bangma JT, Reiner JL, Botha H, Cantu TM, Gouws MA, Guillette MP, Koelmel JP, Luus-Powell WJ, Myburgh J, Rynders O, Sara JR, Smit WJ, Bowden JA. Tissue distribution of perfluoroalkyl acids and health status in wild Mozambique tilapia (Oreochromis mossambicus) from Loskop Dam, Mpumalanga, South Africa. Journal of Environmental Sciences (China). 61: 59-67. PMID 29191316 DOI: 10.1016/J.Jes.2017.03.041  0.546
2017 Ulmer CZ, Ragland JM, Koelmel JP, Heckert A, Jones CM, Garrett T, Yost RA, Bowden JA. LipidQC: Method Validation Tool for Visual Comparison to SRM 1950 Using NIST Interlaboratory Comparison Exercise Lipid Consensus Mean Estimate Values. Analytical Chemistry. PMID 29148710 DOI: 10.1021/Acs.Analchem.7B04042  0.796
2017 Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando A, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, et al. Harmonizing Lipidomics: NIST Interlaboratory Comparison Exercise for Lipidomics using Standard Reference Material 1950 Metabolites in Frozen Human Plasma. Journal of Lipid Research. PMID 28986437 DOI: 10.1194/Jlr.M079012  0.796
2017 Koelmel JP, Kroeger NM, Ulmer CZ, Bowden JA, Patterson RE, Cochran JA, Beecher CWW, Garrett TJ, Yost RA. LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data. Bmc Bioinformatics. 18: 331. PMID 28693421 DOI: 10.1186/S12859-017-1744-3  0.805
2017 Ulmer CZ, Patterson RE, Koelmel JP, Garrett TJ, Yost RA. A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1609: 91-106. PMID 28660577 DOI: 10.1007/978-1-4939-6996-8_10  0.808
2017 Koelmel JP, Ulmer CZ, Jones CM, Yost RA, Bowden JA. Corrigendum to "Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation" [Biochim. Biophys. Acta 1862(8) (2017) 766-770]. Biochimica Et Biophysica Acta. PMID 28648965 DOI: 10.1016/J.Bbalip.2017.06.013  0.802
2017 Koelmel JP, Kroeger NM, Gill EL, Ulmer CZ, Bowden JA, Patterson RE, Yost RA, Garrett TJ. Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation. Journal of the American Society For Mass Spectrometry. PMID 28265968 DOI: 10.1007/S13361-017-1608-0  0.79
2017 Koelmel JP, Ulmer CZ, Jones CM, Yost RA, Bowden JA. Common cases of improper lipid annotation using high-resolution tandem mass spectrometry data and corresponding limitations in biological interpretation. Biochimica Et Biophysica Acta. PMID 28263877 DOI: 10.1016/J.Bbalip.2017.02.016  0.802
2017 Ulmer CZ, Koelmel JP, Ragland JM, Garrett TJ, Bowden JA. LipidPioneer : A Comprehensive User-Generated Exact Mass Template for Lipidomics. Journal of the American Society For Mass Spectrometry. PMID 28074328 DOI: 10.1007/S13361-016-1579-6  0.814
2017 Patterson RE, Kirpich AS, Koelmel JP, Kalavalapalli S, Morse AM, Cusi K, Sunny NE, McIntyre LM, Garrett TJ, Yost RA. Improved experimental data processing for UHPLC–HRMS/MS lipidomics applied to nonalcoholic fatty liver disease Metabolomics. 13. DOI: 10.1007/S11306-017-1280-1  0.57
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