Year |
Citation |
Score |
2022 |
Zhang Y, Chen M, Lu J, Li W, Wolynes PG, Wang W. Frustration and the Kinetic Repartitioning Mechanism of Substrate Inhibition in Enzyme Catalysis. The Journal of Physical Chemistry. B. PMID 36044985 DOI: 10.1021/acs.jpcb.2c03832 |
0.345 |
|
2020 |
Wang M, Wang D, Zhang K, Ngo V, Fan S, Wang W. Motto: Representing Motifs in Consensus Sequences with Minimum Information Loss. Genetics. PMID 32816922 DOI: 10.1534/Genetics.120.303597 |
0.304 |
|
2020 |
Parkinson J, Hard R, Ainsworth RI, Li N, Wang W. Engineering a Histone Reader Protein by Combining Directed Evolution, Sequencing, and Neural Network Based Ordinal Regression. Journal of Chemical Information and Modeling. PMID 32786513 DOI: 10.1021/Acs.Jcim.0C00441 |
0.343 |
|
2018 |
Hard R, Li N, He W, Ross B, Mo GCH, Peng Q, Stein RSL, Komives E, Wang Y, Zhang J, Wang W. Deciphering and engineering chromodomain-methyllysine peptide recognition. Science Advances. 4: eaau1447. PMID 30417094 DOI: 10.1126/Sciadv.Aau1447 |
0.303 |
|
2015 |
Li N, Ainsworth RI, Wu M, Ding B, Ainsworth RI, Wang W. MIEC-SVM: Automated Pipeline for Protein Peptide/ligand Interaction Prediction. Bioinformatics (Oxford, England). PMID 26568623 DOI: 10.1093/Bioinformatics/Btv666 |
0.315 |
|
2013 |
Li N, Stein RS, He W, Komives E, Wang W. Identification of methyllysine peptides binding to chromobox protein homolog 6 chromodomain in the human proteome. Molecular & Cellular Proteomics : McP. 12: 2750-60. PMID 23842000 DOI: 10.1074/Mcp.O112.025015 |
0.344 |
|
2013 |
Stein RS, Li N, He W, Komives E, Wang W. Recognition of methylated peptides by Drosophila melanogaster polycomb chromodomain. Journal of Proteome Research. 12: 1467-77. PMID 23320494 DOI: 10.1021/Pr3011205 |
0.316 |
|
2013 |
Ding B, Wang J, Li N, Wang W. Characterization of small molecule binding. I. Accurate identification of strong inhibitors in virtual screening. Journal of Chemical Information and Modeling. 53: 114-22. PMID 23259763 DOI: 10.1021/Ci300508M |
0.318 |
|
2013 |
Whitaker JW, Chen Z, Wang W. Interplay between DNA sequence motifs and the human epigenome Embnet.Journal. 19: 32-33. DOI: 10.14806/Ej.19.A.615 |
0.316 |
|
2012 |
Won KJ, Xu Z, Zhang X, Whitaker JW, Shoemaker R, Ren B, Xu Y, Wang W. Global identification of transcriptional regulators of pluripotency and differentiation in embryonic stem cells Nucleic Acids Research. 40: 8199-8209. PMID 22730289 DOI: 10.1093/Nar/Gks584 |
0.302 |
|
2012 |
Hou T, Li N, Li Y, Wang W. Characterization of domain-peptide interaction interface: prediction of SH3 domain-mediated protein-protein interaction network in yeast by generic structure-based models. Journal of Proteome Research. 11: 2982-95. PMID 22468754 DOI: 10.1021/Pr3000688 |
0.326 |
|
2012 |
Cui T, Mowrey D, Bondarenko V, Tillman T, Ma D, Landrum E, Perez-Aguilar JM, He J, Wang W, Saven JG, Eckenhoff RG, Tang P, Xu Y. NMR structure and dynamics of a designed water-soluble transmembrane domain of nicotinic acetylcholine receptor. Biochimica Et Biophysica Acta. 1818: 617-26. PMID 22155685 DOI: 10.1016/J.Bbamem.2011.11.021 |
0.578 |
|
2011 |
Xu Z, Hou T, Li N, Xu Y, Wang W. Proteome-wide detection of Abl1 SH3-binding peptides by integrating computational prediction and peptide microarray. Molecular & Cellular Proteomics : McP. 11: O111.010389. PMID 22023807 DOI: 10.1074/Mcp.O111.010389 |
0.34 |
|
2011 |
Li N, Hou T, Ding B, Wang W. Characterization of PDZ domain-peptide interaction interface based on energetic patterns. Proteins. 79: 3208-20. PMID 21928318 DOI: 10.1002/Prot.23157 |
0.315 |
|
2011 |
Stein RS, Wang W. The recognition specificity of the CHD1 chromodomain with modified histone H3 peptides. Journal of Molecular Biology. 406: 527-41. PMID 21195088 DOI: 10.1016/J.Jmb.2010.12.030 |
0.337 |
|
2011 |
McLaughlin WA, Hou T, Taylor SS, Wang W. The identification of novel cyclic AMP-dependent protein kinase anchoring proteins using bioinformatic filters and peptide arrays. Protein Engineering, Design & Selection : Peds. 24: 333-9. PMID 21115539 DOI: 10.1093/Protein/Gzq106 |
0.311 |
|
2008 |
Chang CE, McLaughlin WA, Baron R, Wang W, McCammon JA. Entropic contributions and the influence of the hydrophobic environment in promiscuous protein-protein association. Proceedings of the National Academy of Sciences of the United States of America. 105: 7456-61. PMID 18495919 DOI: 10.1073/Pnas.0800452105 |
0.329 |
|
2008 |
Yu RX, Liu J, True N, Wang W. Identification of direct target genes using joint sequence and expression likelihood with application to DAF-16. Plos One. 3. PMID 18350157 DOI: 10.1371/Journal.Pone.0001821 |
0.301 |
|
2008 |
Hou T, Zhang W, Case DA, Wang W. Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain. Journal of Molecular Biology. 376: 1201-14. PMID 18206907 DOI: 10.1016/J.Jmb.2007.12.054 |
0.312 |
|
2007 |
Philibert P, Stoessel A, Wang W, Sibler AP, Bec N, Larroque C, Saven JG, Courtête J, Weiss E, Martineau P. A focused antibody library for selecting scFvs expressed at high levels in the cytoplasm. Bmc Biotechnology. 7: 81. PMID 18034894 DOI: 10.1186/1472-6750-7-81 |
0.552 |
|
2007 |
Daly NL, Chen Y, Rosengren KJ, Marx U, Phillips M, Waring A, Wang W, Lehrer R, Craik DJ. Retrocyclin-2: structural analysis of a potent anti-HIV theta-defensin. Biochemistry. 46: 9920-9928. PMID 17685559 DOI: 10.1021/Bi700720E |
0.305 |
|
2007 |
Chung JL, Wang W, Bourne PE. High-throughput identification of interacting protein-protein binding sites. Bmc Bioinformatics. 8: 223. PMID 17594507 DOI: 10.1186/1471-2105-8-223 |
0.32 |
|
2007 |
Chowdhury P, Wang W, Lavender S, Bunagan MR, Klemke JW, Tang J, Saven JG, Cooperman BS, Gai F. Fluorescence correlation spectroscopic study of serpin depolymerization by computationally designed peptides. Journal of Molecular Biology. 369: 462-73. PMID 17442346 DOI: 10.1016/J.Jmb.2007.03.042 |
0.557 |
|
2007 |
Kono H, Wang W, Saven JG. Combinatorial protein design strategies using computational methods. Methods in Molecular Biology (Clifton, N.J.). 352: 3-22. PMID 17041256 DOI: 10.1385/1-59745-187-8:3 |
0.622 |
|
2006 |
McLaughlin WA, Hou T, Wang W. Prediction of binding sites of peptide recognition domains: an application on Grb2 and SAP SH2 domains. Journal of Molecular Biology. 357: 1322-34. PMID 16476443 DOI: 10.1016/J.Jmb.2006.01.005 |
0.332 |
|
2006 |
Hou T, Chen K, McLaughlin WA, Lu B, Wang W. Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain. Plos Computational Biology. 2: e1. PMID 16446784 DOI: 10.1371/Journal.Pcbi.0020001 |
0.331 |
|
2006 |
Hou T, McLaughlin W, Lu B, Chen K, Wang W. Prediction of binding affinities between the human amphiphysin-1 SH3 domain and its peptide ligands using homology modeling, molecular dynamics and molecular field analysis. Journal of Proteome Research. 5: 32-43. PMID 16396493 DOI: 10.1021/Pr0502267 |
0.314 |
|
2006 |
Chung JL, Wang W, Bourne PE. Exploiting sequence and structure homologs to identify protein-protein binding sites. Proteins. 62: 630-40. PMID 16329107 DOI: 10.1002/Prot.20741 |
0.332 |
|
2006 |
Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien aMJ, DeGrado WF. Computational De Novo Design and Characterization of a Four-Helix Bundle Protein that Selectively Binds a Nonbiological Cofactor [J. Am. Chem. Soc. 2005, 127, 1346−1347]. Journal of the American Chemical Society. 128: 663-663. DOI: 10.1021/Ja059923Q |
0.592 |
|
2005 |
Cochran FV, Wu SP, Wang W, Nanda V, Saven JG, Therien MJ, DeGrado WF. Computational de novo design and characterization of a four-helix bundle protein that selectively binds a nonbiological cofactor. Journal of the American Chemical Society. 127: 1346-7. PMID 15686346 DOI: 10.1021/Ja044129A |
0.602 |
|
2005 |
Park S, Kono H, Wang W, Boder ET, Saven JG. Progress in the development and application of computational methods for probabilistic protein design Computers and Chemical Engineering. 29: 407-421. DOI: 10.1016/J.Compchemeng.2004.07.037 |
0.635 |
|
2004 |
Cole AM, Wang W, Waring AJ, Lehrer RI. Retrocyclins: Using past as prologue Current Protein and Peptide Science. 5: 373-381. PMID 15544532 DOI: 10.2174/1389203043379657 |
0.318 |
|
2004 |
Park S, Stowell XF, Wang W, Yang X, Saven JG. Computational protein design and discovery Annual Reports On the Progress of Chemistry - Section C. 100: 195-236. DOI: 10.1039/B313669H |
0.642 |
|
2003 |
Calhoun JR, Kono H, Lahr S, Wang W, DeGrado WF, Saven JG. Computational design and characterization of a monomeric helical dinuclear metalloprotein. Journal of Molecular Biology. 334: 1101-15. PMID 14643669 DOI: 10.1016/J.Jmb.2003.10.004 |
0.619 |
|
2002 |
Wang W, Saven JG. Designing gene libraries from protein profiles for combinatorial protein experiments. Nucleic Acids Research. 30: e120. PMID 12409479 DOI: 10.1093/Nar/Gnf119 |
0.665 |
|
2001 |
Wang W, Lim WA, Jakalian A, Wang J, Wang J, Luo R, Bayly CI, Kollman PA. An analysis of the interactions between the Sem-5 SH3 domain and its ligands using molecular dynamics, free energy calculations, and sequence analysis. Journal of the American Chemical Society. 123: 3986-94. PMID 11457149 DOI: 10.1021/Ja003164O |
0.315 |
|
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