Debashis Sahoo - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Bioinformatics, Cancer Systems Biology, Boolean Analysis, Colon Cancer, Prostate Cancer, B-ALL
Website:
https://profiles.ucsd.edu/debashis.sahoo

99 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Tindle C, Fuller M, Fonseca A, Taheri S, Ibeawuchi SR, Beutler N, Katkar GD, Claire A, Castillo V, Hernandez M, Russo H, Duran J, Crotty Alexander LE, Tipps A, Lin G, ... ... Sahoo D, et al. Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19. Elife. 10. PMID 34463615 DOI: 10.7554/eLife.66417  1
2021 Sahu D, Huan J, Wang H, Sahoo D, Casteel DE, Klemke RL, Boss GR, Hansel DE. Bladder Cancer Invasion is Mediated by mTORC2-Driven Regulation of Nitric Oxide and Invadopodia Formation. The American Journal of Pathology. PMID 34428425 DOI: 10.1016/j.ajpath.2021.08.002  1
2021 Reynoso S, Castillo V, Katkar GD, Lopez-Sanchez I, Taheri S, Espinoza C, Rohena C, Sahoo D, Gagneux P, Ghosh P. GIV/Girdin, a non-receptor modulator for Gαi/s, regulates spatiotemporal signaling during sperm capacitation and is required for male fertility. Elife. 10. PMID 34409938 DOI: 10.7554/eLife.69160  1
2021 Ambrosi TH, Marecic O, McArdle A, Sinha R, Gulati GS, Tong X, Wang Y, Steininger HM, Hoover MY, Koepke LS, Murphy MP, Sokol J, Seo EY, Tevlin R, Lopez M, ... ... Sahoo D, et al. Aged skeletal stem cells generate an inflammatory degenerative niche. Nature. PMID 34381212 DOI: 10.1038/s41586-021-03795-7  1
2021 Sahoo D, Swanson L, Sayed IM, Katkar GD, Ibeawuchi SR, Mittal Y, Pranadinata RF, Tindle C, Fuller M, Stec DL, Chang JT, Sandborn WJ, Das S, Ghosh P. Artificial intelligence guided discovery of a barrier-protective therapy in inflammatory bowel disease. Nature Communications. 12: 4246. PMID 34253728 DOI: 10.1038/s41467-021-24470-5  1
2021 Sahoo D, Katkar GD, Khandelwal S, Behroozikhah M, Claire A, Castillo V, Tindle C, Fuller M, Taheri S, Rogers TF, Beutler N, Ramirez SI, Rawlings SA, Pretorius V, Smith DM, et al. AI-guided discovery of the invariant host response to viral pandemics. Ebiomedicine. 103390. PMID 34127431 DOI: 10.1016/j.ebiom.2021.103390  1
2021 Bakowski MA, Beutler N, Wolff KC, Kirkpatrick MG, Chen E, Nguyen TH, Riva L, Shaabani N, Parren M, Ricketts J, Gupta AK, Pan K, Kuo P, Fuller M, Garcia E, ... ... Sahoo D, et al. Drug repurposing screens identify chemical entities for the development of COVID-19 interventions. Nature Communications. 12: 3309. PMID 34083527 DOI: 10.1038/s41467-021-23328-0  1
2021 Sahoo D, Katkar GD, Shimizu C, Kim J, Khandelwal S, Tremoulet AH, Kanegaye J, Bocchini J, Das S, Burns JC, Ghosh P. An AI-guided invariant signature places MIS-C with Kawasaki disease in a continuum of host immune responses. Biorxiv : the Preprint Server For Biology. PMID 33880476 DOI: 10.1101/2021.04.11.439347  1
2021 Ying W, Tang K, Avolio E, Schilling JM, Pasqua T, Liu MA, Cheng H, Gao H, Zhang J, Mahata S, Ko MS, Bandyopadhyay G, Das S, Roth DM, Sahoo D, et al. Immunosuppression of Macrophages Underlies the Cardioprotective Effects of CST (Catestatin). Hypertension (Dallas, Tex. : 1979). 77: 1670-1682. PMID 33826401 DOI: 10.1161/HYPERTENSIONAHA.120.16809  1
2021 Pezhouman A, Engel JL, Nguyen NB, Skelton RJP, Gilmore WB, Qiao R, Sahoo D, Zhao P, Elliott DA, Ardehali R. Isolation and characterization of hESC-derived heart field-specific cardiomyocytes unravels new insights into their transcriptional and electrophysiological profiles. Cardiovascular Research. PMID 33744937 DOI: 10.1093/cvr/cvab102  1
2021 Ear J, Abd El-Hafeez AA, Roy S, Ngo T, Rajapakse N, Choi J, Khandelwal S, Ghassemian M, McCaffrey L, Kufareva I, Sahoo D, Ghosh P. A long isoform of GIV/Girdin contains a PDZ binding module that regulates localization and G-protein binding. The Journal of Biological Chemistry. 100493. PMID 33675748 DOI: 10.1016/j.jbc.2021.100493  1
2021 Campbell CA, Fursova O, Cheng X, Snella E, McCune A, Li L, Solchenberger B, Schmid B, Sahoo D, Morton M, Traver D, Espín-Palazón R. A zebrafish model of granulin deficiency reveals essential roles in myeloid cell differentiation. Blood Advances. 5: 796-811. PMID 33560393 DOI: 10.1182/bloodadvances.2020003096  0.12
2021 Vo D, Singh SC, Safa S, Sahoo D. Boolean implication analysis unveils candidate universal relationships in microbiome data. Bmc Bioinformatics. 22: 49. PMID 33546590 DOI: 10.1186/s12859-020-03941-4  0.01
2021 Sharma A, Lee J, Fonseca AG, Moshensky A, Kothari T, Sayed IM, Ibeawuchi SR, Pranadinata RF, Ear J, Sahoo D, Crotty-Alexander LE, Ghosh P, Das S. E-cigarettes compromise the gut barrier and trigger inflammation. Iscience. 24: 102035. PMID 33537654 DOI: 10.1016/j.isci.2021.102035  1
2020 Espanola SG, Song H, Ryu E, Saxena A, Kim ES, Manegold JE, Nasamran CA, Sahoo D, Oh CK, Bickers C, Shin U, Grainger S, Park YH, Pandolfo L, Kang MS, et al. Haematopoietic stem cell-dependent Notch transcription is mediated by p53 through the Histone chaperone Supt16h. Nature Cell Biology. PMID 33230303 DOI: 10.1038/s41556-020-00604-7  0.08
2020 Shigeyasu K, Toden S, Ozawa T, Matsuyama T, Nagasaka T, Ishikawa T, Sahoo D, Ghosh P, Uetake H, Fujiwara T, Goel A. The PVT1 lncRNA is a novel epigenetic enhancer of MYC, and a promising risk-stratification biomarker in colorectal cancer. Molecular Cancer. 19: 155. PMID 33148262 DOI: 10.1186/s12943-020-01277-4  1
2020 Pradhan A, Ghosh S, Sahoo D, Jha G. Fungal effectors, the double edge sword of phytopathogens. Current Genetics. PMID 33146780 DOI: 10.1007/s00294-020-01118-3  0.01
2020 Tindle C, Fuller M, Fonseca A, Taheri S, Ibeawuchi SR, Beutler N, Claire A, Castillo V, Hernandez M, Russo H, Duran J, Crotty Alexander LE, Tipps A, Lin G, Thistlethwaite PA, ... ... Sahoo D, et al. Adult Stem Cell-derived Complete Lung Organoid Models Emulate Lung Disease in COVID-19. Biorxiv : the Preprint Server For Biology. PMID 33106807 DOI: 10.1101/2020.10.17.344002  1
2020 Sahoo D, Katkar GD, Khandelwal S, Behroozikhah M, Claire A, Castillo V, Tindle C, Fuller M, Taheri S, Rogers TF, Beutler N, Ramirez SI, Rawlings SA, Pretorius V, Smith DM, et al. AI-guided discovery of the invariant host response to viral pandemics. Biorxiv : the Preprint Server For Biology. PMID 32995790 DOI: 10.1101/2020.09.21.305698  1
2020 Sayed IM, Chakraborty A, Abd El-Hafeez AA, Sharma A, Sahan AZ, Huang WJM, Sahoo D, Ghosh P, Hazra TK, Das S. The DNA Glycosylase NEIL2 Suppresses -Infection-Induced Inflammation and DNA Damage in Colonic Epithelial Cells. Cells. 9. PMID 32872214 DOI: 10.3390/Cells9091980  1
2020 Aron M, Park S, Lowenthal BM, Gupta S, Sahoo D, Cheville JC, Hansel DE. Primary Female Urethral Carcinoma: Proposed Staging Modifications Based on Assessment of Female Urethral Histology and Analysis of a Large Series of Female Urethral Carcinomas. The American Journal of Surgical Pathology. PMID 32868524 DOI: 10.1097/Pas.0000000000001569  1
2020 Abbasi N, Long T, Li Y, Yee BA, Cho BS, Hernandez JE, Ma E, Patel PR, Sahoo D, Sayed IM, Varki N, Das S, Ghosh P, Yeo GW, Huang WJM. DDX5 promotes oncogene C3 and FABP1 expressions and drives intestinal inflammation and tumorigenesis. Life Science Alliance. 3. PMID 32817263 DOI: 10.26508/lsa.202000772  1
2020 Rohena C, Rajapakse N, Lo IC, Novick P, Sahoo D, Ghosh P. GIV/Girdin and Exo70 Collaboratively Regulate the Mammalian Polarized Exocytic Machinery. Iscience. 23: 101246. PMID 32590327 DOI: 10.1016/J.Isci.2020.101246  1
2020 Tal MC, Torrez Dulgeroff LB, Myers L, Cham LB, Mayer-Barber KD, Bohrer AC, Castro E, Yiu YY, Lopez Angel C, Pham E, Carmody AB, Messer RJ, Gars E, Kortmann J, Markovic M, ... ... Sahoo D, et al. Upregulation of CD47 Is a Host Checkpoint Response to Pathogen Recognition. Mbio. 11. PMID 32576678 DOI: 10.1128/Mbio.01293-20  1
2020 Rohena C, Kalogriopoulos N, Rajapakse N, Roy S, Lopez-Sanchez I, Ablack J, Sahoo D, Ghosh P. GIV•Kindlin Interaction Is Required for Kindlin-Mediated Integrin Recognition and Activation. Iscience. 23: 101209. PMID 32535026 DOI: 10.1016/J.Isci.2020.101209  1
2020 Sayed IM, Sahan AZ, Venkova T, Chakraborty A, Mukhopadhyay D, Bimczok D, Beswick EJ, Reyes VE, Pinchuk I, Sahoo D, Ghosh P, Hazra TK, Das S. infection down-regulates the DNA glycosylase NEIL2,  resulting in increased genome damage and inflammation in gastric epithelial cells. The Journal of Biological Chemistry. PMID 32518160 DOI: 10.1074/Jbc.Ra119.009981  1
2020 Humphries BA, Cutter AC, Buschhaus JM, Chen YC, Qyli T, Palagama DSW, Eckley S, Robison TH, Bevoor A, Chiang B, Haley HR, Sahoo S, Spinosa PC, Neale DB, Boppisetti J, ... Sahoo D, et al. Enhanced mitochondrial fission suppresses signaling and metastasis in triple-negative breast cancer. Breast Cancer Research : Bcr. 22: 60. PMID 32503622 DOI: 10.1186/S13058-020-01301-X  1
2020 Sahoo D, Zaramela LS, Hernandez GE, Mai U, Taheri S, Dang D, Stouch AN, Medal RM, McCoy AM, Aschner JL, Blackwell TS, Zengler K, Prince LS. Transcriptional profiling of lung macrophages identifies a predictive signature for inflammatory lung disease in preterm infants. Communications Biology. 3: 259. PMID 32444859 DOI: 10.1038/s42003-020-0985-2  1
2020 Dang D, Taheri S, Das S, Ghosh P, Prince LS, Sahoo D. Computational Approach to Identifying Universal Macrophage Biomarkers. Frontiers in Physiology. 11: 275. PMID 32322218 DOI: 10.3389/Fphys.2020.00275  1
2020 Ghosh P, Swanson L, Sayed IM, Mittal Y, Lim BB, Ibeawuchi SR, Foretz M, Viollet B, Sahoo D, Das S. The stress polarity signaling (SPS) pathway serves as a marker and a target in the leaky gut barrier: implications in aging and cancer. Life Science Alliance. 3. PMID 32041849 DOI: 10.26508/lsa.201900481  1
2019 Lowenthal BM, Sahoo D, Amin MB, Hansel DE. Urothelial Proliferation of Unknown Malignant Potential Involving the Bladder: Histopathologic Features and Risk of Progression in De Novo Cases and Cases With Prior Neoplasia. Archives of Pathology & Laboratory Medicine. PMID 31825667 DOI: 10.5858/Arpa.2019-0005-Oa  1
2019 Limso C, Ngo JM, Nguyen P, Leal S, Husain A, Sahoo D, Ghosh P, Bhandari D. The Gα-interacting vesicle-associated protein interacts with and promotes cell surface localization of GRP78 during endoplasmic reticulum stress. Febs Letters. PMID 31736058 DOI: 10.1002/1873-3468.13685  1
2019 Mukohyama J, Isobe T, Hu Q, Hayashi T, Watanabe T, Maeda M, Yanagi H, Qian X, Yamashita K, Minami H, Mimori K, Sahoo D, Kakeji Y, Suzuki A, Dalerba P, et al. miR-221 targets QKI to enhance the tumorigenic capacity of human colorectal cancer stem cells. Cancer Research. PMID 31416845 DOI: 10.1158/0008-5472.Can-18-3544  1
2019 Pandey S, Sahoo D. Identification of gene expression logical invariants in . Plant Direct. 3: e00123. PMID 31245766 DOI: 10.1002/pld3.123  0.08
2019 Dabydeen SA, Desai A, Sahoo D. Unbiased Boolean analysis of public gene expression data for cell cycle gene identification. Molecular Biology of the Cell. mbcE19010013. PMID 31091168 DOI: 10.1091/Mbc.E19-01-0013  0.36
2019 Rajasekaran S, Nagarajha Selvan LD, Dotts K, Kumar R, Rishi P, Khetan V, Bisht M, Sivaraman K, Krishnakumar S, Sahoo D, Campbell MJ, Elchuri SV, Miles WO. Non-coding and Coding Transcriptional Profiles Are Significantly Altered in Pediatric Retinoblastoma Tumors. Frontiers in Oncology. 9: 221. PMID 31058073 DOI: 10.3389/Fonc.2019.00221  0.01
2019 Ghosh P, Garg S, Mohanty I, Sahoo D, Pradhan RC. Comparison and storage study of ultra-filtered clarified jamun () juice. Journal of Food Science and Technology. 56: 1877-1889. PMID 30996423 DOI: 10.1007/s13197-019-03648-2  1
2019 Stobdan T, Sahoo D, Azad P, Hartley I, Heinrichsen E, Zhou D, Haddad GG. High fat diet induces sex-specific differential gene expression in Drosophila melanogaster. Plos One. 14: e0213474. PMID 30861021 DOI: 10.1371/Journal.Pone.0213474  0.01
2019 Rubinstein MR, Baik JE, Lagana SM, Han RP, Raab WJ, Sahoo D, Dalerba P, Wang TC, Han YW. promotes colorectal cancer by inducing Wnt/β-catenin modulator Annexin A1. Embo Reports. PMID 30833345 DOI: 10.15252/Embr.201847638  1
2018 Kahn SA, Wang X, Nitta RT, Gholamin S, Theruvath J, Hutter G, Azad TD, Wadi L, Bolin S, Ramaswamy V, Esparza R, Liu KW, Edwards M, Swartling FJ, Sahoo D, et al. Publisher Correction: Notch1 regulates the initiation of metastasis and self-renewal of Group 3 medulloblastoma. Nature Communications. 9: 4651. PMID 30389946 DOI: 10.1038/S41467-018-07182-1  1
2018 Kahn SA, Wang X, Nitta RT, Gholamin S, Theruvath J, Hutter G, Azad TD, Wadi L, Bolin S, Ramaswamy V, Esparza R, Liu KW, Edwards M, Swartling FJ, Sahoo D, et al. Notch1 regulates the initiation of metastasis and self-renewal of Group 3 medulloblastoma. Nature Communications. 9: 4121. PMID 30297829 DOI: 10.1038/S41467-018-06564-9  1
2018 Chan CKF, Gulati GS, Sinha R, Tompkins JV, Lopez M, Carter AC, Ransom RC, Reinisch A, Wearda T, Murphy M, Brewer RE, Koepke LS, Marecic O, Manjunath A, Seo EY, ... ... Sahoo D, et al. Identification of the Human Skeletal Stem Cell. Cell. 175: 43-56.e21. PMID 30241615 DOI: 10.1016/J.Cell.2018.07.029  1
2018 Aznar N, Ear J, Dunkel Y, Sun N, Satterfield K, He F, Kalogriopoulos NA, Lopez-Sanchez I, Ghassemian M, Sahoo D, Kufareva I, Ghosh P. Convergence of Wnt, growth factor, and heterotrimeric G protein signals on the guanine nucleotide exchange factor Daple. Science Signaling. 11. PMID 29487190 DOI: 10.1126/Scisignal.Aao4220  1
2018 Sereti KI, Nguyen NB, Kamran P, Zhao P, Ranjbarvaziri S, Park S, Sabri S, Engel JL, Sung K, Kulkarni RP, Ding Y, Hsiai TK, Plath K, Ernst J, Sahoo D, et al. Analysis of cardiomyocyte clonal expansion during mouse heart development and injury. Nature Communications. 9: 754. PMID 29467410 DOI: 10.1038/S41467-018-02891-Z  1
2018 Sahoo D, Wei W, Auman H, Hurtado-Coll A, Carroll PR, Fazli L, Gleave ME, Lin DW, Nelson PS, Simko J, Thompson IM, Leach RJ, Troyer DA, True LD, McKenney JK, et al. Boolean analysis identifies CD38 as a biomarker of aggressive localized prostate cancer. Oncotarget. 9: 6550-6561. PMID 29464091 DOI: 10.18632/Oncotarget.23973  1
2018 Engel JL, Pezhouman A, Nguyen NB, Zhao P, Khoja S, Skelton RJ, Sahoo D, Elliott DA, Ardehali R. Abstract 461: Prospective Isolation of Heart Field Specific Cardiomyocytes from Differentiating Human Embryonic Stem Cells Circulation Research. 123. DOI: 10.1161/Res.123.Suppl_1.461  0.01
2018 Zabala M, Lobo NA, Seoane JA, Stelzer Y, Luong AV, Isobe T, Zarnegar MA, Watanabe N, Antoñana S, Lam J, Qian D, Sikandar SS, Kuo AH, Heitink LS, Shimono Y, ... ... Sahoo D, et al. Abstract B67: The DLK1-DIO3 imprinted region regulates long-term proliferation in normal and malignant breast epithelium Molecular Cancer Research. 16. DOI: 10.1158/1557-3125.Advbc17-B67  1
2017 Leivo MZ, Sahoo D, Hamilton Z, Mirsadraei L, Shabaik A, Parsons JK, Kader AK, Derweesh I, Kane C, Hansel DE. Analysis of T1 Bladder Cancer on Biopsy and Transurethral Resection Specimens: Comparison and Ranking of T1 Quantification Approaches to Predict Progression to Muscularis Propria Invasion. The American Journal of Surgical Pathology. PMID 29076872 DOI: 10.1097/Pas.0000000000000964  1
2017 Medal RM, Im AM, Yamamoto Y, Lakhdari O, Blackwell TS, Hoffman HM, Sahoo D, Prince LS. The Innate Immune Response in Fetal Lung Mesenchymal Cells Targets VEGFR2 Expression and Activity. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00554.2016. PMID 28336813 DOI: 10.1152/Ajplung.00554.2016  1
2017 Sin ML, Mach KE, Sinha R, Wu F, Trivedi D, Altobelli E, Jensen KC, Sahoo D, Lu Y, Liao JC. Deep Sequencing of Urinary RNAs for Bladder Cancer Molecular Diagnostics. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 28193625 DOI: 10.1158/1078-0432.Ccr-16-2610  1
2017 Matsubara J, Li YF, Dalerba P, Sahoo D, Isobe T, Altman RB, Clarke MF. Abstract 81: E2F4/p107 complex regulates chemotherapy resistance in human colorectal cancer stem cells Cancer Research. 77: 81-81. DOI: 10.1158/1538-7445.Am2017-81  1
2016 Cai S, Kalisky T, Sahoo D, Dalerba P, Feng W, Lin Y, Qian D, Kong A, Yu J, Wang F, Chen EY, Scheeren FA, Kuo AH, Sikandar SS, Hisamori S, et al. A Quiescent Bcl11b High Stem Cell Population Is Required for Maintenance of the Mammary Gland. Cell Stem Cell. PMID 28041896 DOI: 10.1016/J.Stem.2016.11.007  1
2016 Ngo M, Han A, Lakatos A, Sahoo D, Hachey SJ, Weiskopf K, Beck AH, Weissman IL, Boiko AD. Antibody Therapy Targeting CD47 and CD271 Effectively Suppresses Melanoma Metastasis in Patient-Derived Xenografts. Cell Reports. PMID 27477289 DOI: 10.1016/J.Celrep.2016.07.004  1
2016 Dalerba P, Sahoo D, Clarke MF. CDX2 as a Prognostic Biomarker in Colon Cancer. The New England Journal of Medicine. 374: 2184. PMID 27248627 DOI: 10.1056/Nejmc1602584  1
2016 Krampitz GW, George BM, Willingham SB, Volkmer JP, Weiskopf K, Jahchan N, Newman AM, Sahoo D, Zemek AJ, Yanovsky RL, Nguyen JK, Schnorr PJ, Mazur PK, Sage J, Longacre TA, et al. Identification of tumorigenic cells and therapeutic targets in pancreatic neuroendocrine tumors. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035983 DOI: 10.1073/Pnas.1600007113  1
2016 Rennert RC, Achrol AS, Januszyk M, Kahn SA, Liu TT, Liu Y, Sahoo D, Rodrigues M, Maan ZN, Wong VW, Cheshier SH, Chang SD, Steinberg GK, Harsh GR, Gurtner GC. Multiple subsets of brain tumor initiating cells co-exist in glioblastoma. Stem Cells (Dayton, Ohio). PMID 26991945 DOI: 10.1002/Stem.2359  1
2016 Chen JY, Miyanishi M, Wang SK, Yamazaki S, Sinha R, Kao KS, Seita J, Sahoo D, Nakauchi H, Weissman IL. Hoxb5 marks long-term haematopoietic stem cells and reveals a homogenous perivascular niche. Nature. 530: 223-7. PMID 26863982 DOI: 10.1038/Nature16943  1
2016 Dalerba P, Sahoo D, Paik S, Guo X, Yothers G, Song N, Wilcox-Fogel N, Forgó E, Rajendran PS, Miranda SP, Hisamori S, Hutchison J, Kalisky T, Qian D, Wolmark N, et al. CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer. The New England Journal of Medicine. 374: 211-22. PMID 26789870 DOI: 10.1056/Nejmoa1506597  1
2016 Skelton RJ, Brady B, Khoja S, Sahoo D, Engel J, Arasaratnam D, Saleh KK, Abilez OJ, Zhao P, Stanley EG, Elefanty AG, Kwon M, Elliott DA, Ardehali R. CD13 and ROR2 Permit Isolation of Highly Enriched Cardiac Mesoderm from Differentiating Human Embryonic Stem Cells. Stem Cell Reports. 6: 95-108. PMID 26771355 DOI: 10.1016/J.Stemcr.2015.11.006  1
2016 Kahn SA, Wang X, Nitta R, Gholamin S, Ramaswamy V, Azad T, Sahoo D, Esparza R, Chu P, Fisher P, Vogel H, Li G, Cho Y, Taylor M, Mitra S, et al. MB-16NOTCH1 PROMOTES GROUP 3 MEDULLOBLASTOMA METASTASIS, INITIATION AND SELF-RENEWAL Neuro-Oncology. 18: iii100.1-iii100. DOI: 10.1093/Neuonc/Now076.14  0.01
2015 Cheah MT, Chen JY, Sahoo D, Contreras-Trujillo H, Volkmer AK, Scheeren FA, Volkmer JP, Weissman IL. CD14-expressing cancer cells establish the inflammatory and proliferative tumor microenvironment in bladder cancer. Proceedings of the National Academy of Sciences of the United States of America. 112: 4725-30. PMID 25825750 DOI: 10.1073/Pnas.1424795112  1
2015 Chan CK, Seo EY, Chen JY, Lo D, McArdle A, Sinha R, Tevlin R, Seita J, Vincent-Tompkins J, Wearda T, Lu WJ, Senarath-Yapa K, Chung MT, Marecic O, Tran M, ... ... Sahoo D, et al. Identification and specification of the mouse skeletal stem cell. Cell. 160: 285-98. PMID 25594184 DOI: 10.1016/J.Cell.2014.12.002  1
2015 Achrol A, Liu T, Vogel H, Chang S, Edwards M, Harsh G, Sahoo D. OT-08 * DISTINCT BRAIN LINEAGE AND STROMAL GENE EXPRESSION PATTERNS IN WNT, SHH, GROUP 3 AND GROUP 4 MOLECULAR SUBGROUPS OF PEDIATRIC MEDULLOBLASTOMA Neuro-Oncology. 17: iii30-iii30. DOI: 10.1093/Neuonc/Nov061.121  0.04
2014 Scheeren FA, Kuo AH, van Weele LJ, Cai S, Glykofridis I, Sikandar SS, Zabala M, Qian D, Lam JS, Johnston D, Volkmer JP, Sahoo D, van de Rijn M, Dirbas FM, Somlo G, et al. A cell-intrinsic role for TLR2-MYD88 in intestinal and breast epithelia and oncogenesis. Nature Cell Biology. 16: 1238-48. PMID 25362351 DOI: 10.1038/Ncb3058  1
2014 Pan Y, Volkmer JP, Mach KE, Rouse RV, Liu JJ, Sahoo D, Chang TC, Metzner TJ, Kang L, van de Rijn M, Skinner EC, Gambhir SS, Weissman IL, Liao JC. Endoscopic molecular imaging of human bladder cancer using a CD47 antibody. Science Translational Medicine. 6: 260ra148. PMID 25355698 DOI: 10.1126/Scitranslmed.3009457  1
2014 Shin K, Lim A, Zhao C, Sahoo D, Pan Y, Spiekerkoetter E, Liao JC, Beachy PA. Hedgehog signaling restrains bladder cancer progression by eliciting stromal production of urothelial differentiation factors. Cancer Cell. 26: 521-33. PMID 25314078 DOI: 10.1016/J.Ccell.2014.09.001  1
2014 Mohapatra PC, Sarangi A, Sarangi AK, Dalai RK, Sahoo D. Sequential Serum Cytokine Levels of TNF-Alpha, IL-4 and IL-12 are Associated with Prognosis in Plasmodium falciparum Malaria. Indian Journal of Clinical Biochemistry : Ijcb. 29: 321-6. PMID 24966480 DOI: 10.1007/s12291-013-0359-3  0.04
2014 Dimov IK, Lu R, Lee EP, Seita J, Sahoo D, Park SM, Weissman IL, Lee LP. Discriminating cellular heterogeneity using microwell-based RNA cytometry. Nature Communications. 5: 3451. PMID 24667995 DOI: 10.1038/Ncomms4451  1
2014 Pan Y, Volkmer J, Mach K, Rouse R, Liu J, Sahoo D, Chang T, Van De Rijn M, Freiha F, Skinner E, Gambhir S, Weissman I, Liao J. 622 Endoscopic molecular imaging of human bladder cancer with anti-CD47 European Urology Supplements. 13: e622. DOI: 10.1016/S1569-9056(14)60612-6  0.01
2014 Rothenberg ME, Cintra T, Chen EC, Kalisky T, Sahoo D, Mobley B, Quake S, Clarke MF. 398 Loss of Gpsm2 Disrupts Stem Cell Dynamics and Mitotic Spindle Orientation in Normal Colon and Colon Cancer Gastroenterology. 146: S-85-S-86. DOI: 10.1016/S0016-5085(14)60306-1  0.01
2013 Voskoboynik A, Newman AM, Corey DM, Sahoo D, Pushkarev D, Neff NF, Passarelli B, Koh W, Ishizuka KJ, Palmeri KJ, Dimov IK, Keasar C, Fan HC, Mantalas GL, Sinha R, et al. Identification of a colonial chordate histocompatibility gene. Science (New York, N.Y.). 341: 384-7. PMID 23888037 DOI: 10.1126/Science.1238036  1
2013 Chan CK, Lindau P, Jiang W, Chen JY, Zhang LF, Chen CC, Seita J, Sahoo D, Kim JB, Lee A, Park S, Nag D, Gong Y, Kulkarni S, Luppen CA, et al. Clonal precursor of bone, cartilage, and hematopoietic niche stromal cells. Proceedings of the National Academy of Sciences of the United States of America. 110: 12643-8. PMID 23858471 DOI: 10.1073/Pnas.1310212110  1
2013 Voskoboynik A, Neff NF, Sahoo D, Newman AM, Pushkarev D, Koh W, Passarelli B, Fan HC, Mantalas GL, Palmeri KJ, Ishizuka KJ, Gissi C, Griggio F, Ben-Shlomo R, Corey DM, et al. The genome sequence of the colonial chordate, Botryllus schlosseri. Elife. 2: e00569. PMID 23840927 DOI: 10.7554/Elife.00569  1
2013 Wu B, Sahoo D, Brooks JD. Comprehensive gene expression changes associated with mouse postnatal kidney development. The Journal of Urology. 189: 2385-90. PMID 23220383 DOI: 10.1016/J.Juro.2012.12.002  1
2012 Rinkevich Y, Mori T, Sahoo D, Xu PX, Bermingham JR, Weissman IL. Identification and prospective isolation of a mesothelial precursor lineage giving rise to smooth muscle cells and fibroblasts for mammalian internal organs, and their vasculature. Nature Cell Biology. 14: 1251-60. PMID 23143399 DOI: 10.1038/Ncb2610  1
2012 Sahoo D. The power of boolean implication networks. Frontiers in Physiology. 3: 276. PMID 22934030 DOI: 10.3389/Fphys.2012.00276  0.01
2012 Seita J, Sahoo D, Rossi DJ, Bhattacharya D, Serwold T, Inlay MA, Ehrlich LI, Fathman JW, Dill DL, Weissman IL. Gene Expression Commons: an open platform for absolute gene expression profiling. Plos One. 7: e40321. PMID 22815738 DOI: 10.1371/Journal.Pone.0040321  1
2012 Lewis PW, Sahoo D, Geng C, Bell M, Lipsick JS, Botchan MR. Drosophila lin-52 acts in opposition to repressive components of the Myb-MuvB/dREAM complex. Molecular and Cellular Biology. 32: 3218-27. PMID 22688510 DOI: 10.1128/Mcb.00432-12  1
2012 Willingham SB, Volkmer JP, Gentles AJ, Sahoo D, Dalerba P, Mitra SS, Wang J, Contreras-Trujillo H, Martin R, Cohen JD, Lovelace P, Scheeren FA, Chao MP, Weiskopf K, Tang C, et al. The CD47-signal regulatory protein alpha (SIRPa) interaction is a therapeutic target for human solid tumors. Proceedings of the National Academy of Sciences of the United States of America. 109: 6662-7. PMID 22451913 DOI: 10.1073/Pnas.1121623109  1
2012 Volkmer JP, Sahoo D, Chin RK, Ho PL, Tang C, Kurtova AV, Willingham SB, Pazhanisamy SK, Contreras-Trujillo H, Storm TA, Lotan Y, Beck AH, Chung BI, Alizadeh AA, Godoy G, et al. Three differentiation states risk-stratify bladder cancer into distinct subtypes. Proceedings of the National Academy of Sciences of the United States of America. 109: 2078-83. PMID 22308455 DOI: 10.1073/Pnas.1120605109  1
2012 Volkmer JP, Sahoo D, Chin RK, Ho PL, Tang C, Kurtova AV, Willingham SB, Pazhanisamy SK, Contreras-Trujillo H, Storm TA, Lotan Y, Beck AH, Chung BI, Alizadeh AA, Godoy G, et al. Three differentiation states risk-stratify bladder cancer into distinct subtypes (Proceedings of the National Academy of Sciences of the United States of America (2012) 109, 6 (2078-2083) DOI: 10.1073/pnas.1120605109) Proceedings of the National Academy of Sciences of the United States of America. 109: 3600. DOI: 10.1073/Pnas.1201493109  1
2011 Pang WW, Price EA, Sahoo D, Beerman I, Maloney WJ, Rossi DJ, Schrier SL, Weissman IL. Human bone marrow hematopoietic stem cells are increased in frequency and myeloid-biased with age. Proceedings of the National Academy of Sciences of the United States of America. 108: 20012-7. PMID 22123971 DOI: 10.1073/Pnas.1116110108  1
2011 Dalerba P, Kalisky T, Sahoo D, Rajendran PS, Rothenberg ME, Leyrat AA, Sim S, Okamoto J, Johnston DM, Qian D, Zabala M, Bueno J, Neff NF, Wang J, Shelton AA, et al. Single-cell dissection of transcriptional heterogeneity in human colon tumors. Nature Biotechnology. 29: 1120-7. PMID 22081019 DOI: 10.1038/Nbt.2038  1
2011 Tang C, Lee AS, Volkmer JP, Sahoo D, Nag D, Mosley AR, Inlay MA, Ardehali R, Chavez SL, Pera RR, Behr B, Wu JC, Weissman IL, Drukker M. An antibody against SSEA-5 glycan on human pluripotent stem cells enables removal of teratoma-forming cells. Nature Biotechnology. 29: 829-34. PMID 21841799 DOI: 10.1038/Nbt.1947  1
2010 Ooi AG, Sahoo D, Adorno M, Wang Y, Weissman IL, Park CY. MicroRNA-125b expands hematopoietic stem cells and enriches for the lymphoid-balanced and lymphoid-biased subsets. Proceedings of the National Academy of Sciences of the United States of America. 107: 21505-10. PMID 21118986 DOI: 10.1073/Pnas.1016218107  1
2010 Sahoo D, Seita J, Bhattacharya D, Inlay MA, Weissman IL, Plevritis SK, Dill DL. MiDReG: a method of mining developmentally regulated genes using Boolean implications. Proceedings of the National Academy of Sciences of the United States of America. 107: 5732-7. PMID 20231483 DOI: 10.1073/Pnas.0913635107  1
2010 Bhamre S, Sahoo D, Tibshirani R, Dill DL, Brooks JD. Gene Expression Changes Induced by Genistein in the Prostate Cancer Cell Line LNCaP The Open Prostate Cancer Journal. 3: 86-98. DOI: 10.2174/1876822901003010086  0.01
2009 Inlay MA, Bhattacharya D, Sahoo D, Serwold T, Seita J, Karsunky H, Plevritis SK, Dill DL, Weissman IL. Ly6d marks the earliest stage of B-cell specification and identifies the branchpoint between B-cell and T-cell development. Genes & Development. 23: 2376-81. PMID 19833765 DOI: 10.1101/Gad.1836009  1
2009 Bhamre S, Sahoo D, Tibshirani R, Dill DL, Brooks JD. Temporal changes in gene expression induced by sulforaphane in human prostate cancer cells. The Prostate. 69: 181-90. PMID 18973173 DOI: 10.1002/Pros.20869  1
2009 Chin R, Sahoo D, Willingham S, Storm T, Schmidt S, Ross J, Yang K, Ailles L, Teng N, Weissman I. Molecular and Bioinformatic Identification of Epithelial Ovarian Cancer Stem Cells for Radiotherapeutic Targeting International Journal of Radiation Oncology*Biology*Physics. 75: S543-S544. DOI: 10.1016/J.Ijrobp.2009.07.1242  0.04
2008 Sahoo D, Dill DL, Gentles AJ, Tibshirani R, Plevritis SK. Boolean implication networks derived from large scale, whole genome microarray datasets. Genome Biology. 9: R157. PMID 18973690 DOI: 10.1186/Gb-2008-9-10-R157  1
2008 Shachaf CM, Gentles AJ, Elchuri S, Sahoo D, Soen Y, Sharpe O, Perez OD, Chang M, Mitchel D, Robinson WH, Dill D, Nolan GP, Plevritis SK, Felsher DW. Genomic and proteomic analysis reveals a threshold level of MYC required for tumor maintenance Cancer Research. 68: 5132-5142. PMID 18593912 DOI: 10.1158/0008-5472.Can-07-6192  1
2008 Wu CH, Sahoo D, Arvanitis C, Bradon N, Dill DL, Felsher DW. Combined analysis of murine and human microarrays and ChIP analysis reveals genes associated with the ability of MYC to maintain tumorigenesis. Plos Genetics. 4: e1000090. PMID 18535662 DOI: 10.1371/Journal.Pgen.1000090  1
2007 Sahoo D, Dill DL, Tibshirani R, Plevritis SK. Extracting binary signals from microarray time-course data. Nucleic Acids Research. 35: 3705-12. PMID 17517782 DOI: 10.1093/Nar/Gkm284  1
2006 Iyer S, Sahoo D, Emerson EA, Jain J. On partitioning and symbolic model checking Ieee Transactions On Computer-Aided Design of Integrated Circuits and Systems. 25: 780-788. DOI: 10.1109/Tcad.2006.870410  1
2006 Iyer S, Jain J, Sahoo D, Emerson EA. Under-approximation heuristics for grid-based bounded model checking Electronic Notes in Theoretical Computer Science. 135: 31-46. DOI: 10.1016/J.Entcs.2005.10.017  1
2005 Sahoo D, Jain J, Iyer SK, Dill D, Emerson EA. Predictive reachability using a sample-based approach Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3725: 388-392. DOI: 10.1007/11560548_38  1
2005 Iyer SK, Jain J, Prasad MR, Sahoo D, Sidle T. Error detection using BMC in a parallel environment Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3725: 354-358. DOI: 10.1007/11560548_30  1
2003 Iyer SK, Sahoo D, Stangier C, Narayan A, Jain J. Improved Symbolic Verification Using Partitioning Techniques Lecture Notes in Computer Science. 410-424. DOI: 10.1007/978-3-540-39724-3_35  1
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