Mikel Valle - Publications

Affiliations: 
Natl. Center of Biotechnology (CSIC) 
 CIC bioGUNE, Spain 

36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Zamora M, Méndez-López E, Agirrezabala X, Cuesta R, Lavín JL, Sánchez-Pina MA, Aranda MA, Valle M. Potyvirus virion structure shows conserved protein fold and RNA binding site in ssRNA viruses. Science Advances. 3: eaao2182. PMID 28948231 DOI: 10.1126/sciadv.aao2182  0.56
2017 Agirrezabala X, Samatova E, Klimova M, Zamora M, Gil-Carton D, Rodnina MV, Valle M. Ribosome rearrangements at the onset of translational bypassing. Science Advances. 3: e1700147. PMID 28630923 DOI: 10.1126/sciadv.1700147  0.56
2015 Agirrezabala X, Méndez-López E, Lasso G, Sánchez-Pina MA, Aranda M, Valle M. The near-atomic cryoEM structure of a flexible filamentous plant virus shows homology of its coat protein with nucleoproteins of animal viruses. Elife. 4: e11795. PMID 26673077 DOI: 10.7554/eLife.11795  0.56
2015 Jiménez-Rojo N, Lete MG, Rojas E, Gil D, Valle M, Alonso A, Moya SE, Goñi FM. Lipidic nanovesicles stabilize suspensions of metal oxide nanoparticles. Chemistry and Physics of Lipids. 191: 84-90. PMID 26301898 DOI: 10.1016/j.chemphyslip.2015.08.012  0.72
2015 Agirrezabala X, Valle M. Structural Insights into tRNA Dynamics on the Ribosome. International Journal of Molecular Sciences. 16: 9866-95. PMID 25941930 DOI: 10.3390/ijms16059866  0.56
2015 Fernández-Millán P, Lázaro M, Canslz-Arda Ş, Gerhold JM, Rajala N, Schmitz CA, Silva-Espiña C, Gil D, Bernadó P, Valle M, Spelbrink JN, Solà M. The hexameric structure of the human mitochondrial replicative helicase Twinkle Nucleic Acids Research. 43: 4284-4295. PMID 25824949 DOI: 10.1093/nar/gkv189  0.72
2015 Lete MG, Sot J, Gil D, Valle M, Medina M, Goñi FM, Alonso A. Histones cause aggregation and fusion of lipid vesicles containing phosphatidylinositol-4-phosphate. Biophysical Journal. 108: 863-71. PMID 25692591 DOI: 10.1016/j.bpj.2014.12.018  0.72
2014 Lasso G, Yu LP, Gil D, Lázaro M, Tong L, Valle M. Functional conformations for pyruvate carboxylase during catalysis explored by cryoelectron microscopy. Structure (London, England : 1993). 22: 911-22. PMID 24882745 DOI: 10.1016/j.str.2014.04.011  0.36
2013 Agirrezabala X, Fernández IS, Kelley AC, Cartón DG, Ramakrishnan V, Valle M. The ribosome triggers the stringent response by RelA via a highly distorted tRNA. Embo Reports. 14: 811-6. PMID 23877429 DOI: 10.1038/embor.2013.106  0.72
2011 Julián P, Milon P, Agirrezabala X, Lasso G, Gil D, Rodnina MV, Valle M. The Cryo-EM structure of a complete 30S translation initiation complex from Escherichia coli. Plos Biology. 9: e1001095. PMID 21750663 DOI: 10.1371/journal.pbio.1001095  0.56
2011 Melero R, Rajagopalan S, Lázaro M, Joerger AC, Brandt T, Veprintsev DB, Lasso G, Gil D, Scheres SH, Carazo JM, Fersht AR, Valle M. Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA. Proceedings of the National Academy of Sciences of the United States of America. 108: 557-62. PMID 21178074 DOI: 10.1073/pnas.1015520107  0.72
2010 Lasso G, Yu LP, Gil D, Xiang S, Tong L, Valle M. Cryo-EM analysis reveals new insights into the mechanism of action of pyruvate carboxylase. Structure (London, England : 1993). 18: 1300-10. PMID 20947019 DOI: 10.1016/j.str.2010.07.008  0.36
2009 Scheres SHW, Melero R, Valle M, Carazo JM. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure (London, England : 1993). 17: 1563-1572. PMID 20004160 DOI: 10.1016/j.str.2009.10.009  1
2009 Yu LP, Xiang S, Lasso G, Gil D, Valle M, Tong L. A symmetrical tetramer for S. aureus pyruvate carboxylase in complex with coenzyme A. Structure (London, England : 1993). 17: 823-32. PMID 19523900 DOI: 10.1016/j.str.2009.04.008  0.36
2009 Scheres SH, Valle M, Grob P, Nogales E, Carazo JM. Maximum likelihood refinement of electron microscopy data with normalization errors. Journal of Structural Biology. 166: 234-40. PMID 19236920 DOI: 10.1016/j.jsb.2009.02.007  0.72
2008 Julián P, Konevega AL, Scheres SH, Lázaro M, Gil D, Wintermeyer W, Rodnina MV, Valle M. Structure of ratcheted ribosomes with tRNAs in hybrid states. Proceedings of the National Academy of Sciences of the United States of America. 105: 16924-7. PMID 18971332 DOI: 10.1073/pnas.0809587105  1
2007 Tidow H, Melero R, Mylonas E, Freund SM, Grossmann JG, Carazo JM, Svergun DI, Valle M, Fersht AR. Quaternary structures of tumor suppressor p53 and a specific p53 DNA complex. Proceedings of the National Academy of Sciences of the United States of America. 104: 12324-9. PMID 17620598 DOI: 10.1073/pnas.0705069104  0.72
2007 Scheres SH, Gao H, Valle M, Herman GT, Eggermont PP, Frank J, Carazo JM. Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization. Nature Methods. 4: 27-9. PMID 17179934 DOI: 10.1038/nmeth992  0.72
2006 Velazquez-Muriel JA, Valle M, Santamaría-Pang A, Kakadiaris IA, Carazo JM. Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies. Structure (London, England : 1993). 14: 1115-26. PMID 16843893 DOI: 10.1016/j.str.2006.05.013  0.72
2006 Valle M, Chen XS, Donate LE, Fanning E, Carazo JM. Structural basis for the cooperative assembly of large T antigen on the origin of replication. Journal of Molecular Biology. 357: 1295-305. PMID 16481006 DOI: 10.1016/j.jmb.2006.01.021  0.72
2005 Scheres SH, Valle M, Carazo JM. Fast maximum-likelihood refinement of electron microscopy images. Bioinformatics (Oxford, England). 21: ii243-4. PMID 16204112 DOI: 10.1093/bioinformatics/bti1140  1
2005 Gao N, Zavialov AV, Li W, Sengupta J, Valle M, Gursky RP, Ehrenberg M, Frank J. Mechanism for the disassembly of the posttermination complex inferred from cryo-EM studies. Molecular Cell. 18: 663-74. PMID 15949441 DOI: 10.1016/j.molcel.2005.05.005  0.36
2005 Scheres SH, Valle M, Nuñez R, Sorzano CO, Marabini R, Herman GT, Carazo JM. Maximum-likelihood multi-reference refinement for electron microscopy images. Journal of Molecular Biology. 348: 139-49. PMID 15808859 DOI: 10.1016/j.jmb.2005.02.031  1
2005 Agirrezabala X, Martín-Benito J, Valle M, González JM, Valencia A, Valpuesta JM, Carrascosa JL. Structure of the connector of bacteriophage T7 at 8A resolution: structural homologies of a basic component of a DNA translocating machinery. Journal of Molecular Biology. 347: 895-902. PMID 15784250 DOI: 10.1016/j.jmb.2005.02.005  0.56
2005 Frank J, Sengupta J, Gao H, Li W, Valle M, Zavialov A, Ehrenberg M. The role of tRNA as a molecular spring in decoding, accommodation, and peptidyl transfer. Febs Letters. 579: 959-62. PMID 15680982 DOI: 10.1016/j.febslet.2004.10.105  0.36
2004 Gao H, Valle M, Ehrenberg M, Frank J. Dynamics of EF-G interaction with the ribosome explored by classification of a heterogeneous cryo-EM dataset. Journal of Structural Biology. 147: 283-90. PMID 15450297 DOI: 10.1016/j.jsb.2004.02.008  0.36
2003 Gomez-Lorenzo MG, Valle M, Frank J, Gruss C, Sorzano CO, Chen XS, Donate LE, Carazo JM. Large T antigen on the simian virus 40 origin of replication: a 3D snapshot prior to DNA replication. The Embo Journal. 22: 6205-13. PMID 14633980 DOI: 10.1093/emboj/cdg612  1
2003 Valle M, Zavialov A, Li W, Stagg SM, Sengupta J, Nielsen RC, Nissen P, Harvey SC, Ehrenberg M, Frank J. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy. Nature Structural Biology. 10: 899-906. PMID 14566331 DOI: 10.1038/nsb1003  0.72
2003 Tama F, Valle M, Frank J, Brooks CL. Dynamic reorganization of the functionally active ribosome explored by normal mode analysis and cryo-electron microscopy. Proceedings of the National Academy of Sciences of the United States of America. 100: 9319-23. PMID 12878726 DOI: 10.1073/pnas.1632476100  0.36
2003 Valle M, Zavialov A, Sengupta J, Rawat U, Ehrenberg M, Frank J. Locking and unlocking of ribosomal motions. Cell. 114: 123-34. PMID 12859903  0.36
2003 Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J. Study of the structural dynamics of the E coli 70S ribosome using real-space refinement. Cell. 113: 789-801. PMID 12809609 DOI: 10.1016/S0092-8674(03)00427-6  0.72
2003 Valle M, Gillet R, Kaur S, Henne A, Ramakrishnan V, Frank J. Visualizing tmRNA entry into a stalled ribosome Science. 300: 127-130. PMID 12677067 DOI: 10.1126/science.1081798  0.72
2003 Yarus M, Valle M, Frank J. A twisted tRNA intermediate sets the threshold for decoding. Rna (New York, N.Y.). 9: 384-5. PMID 12649490 DOI: 10.1261/rna.2184703  0.72
2003 Rawat UB, Zavialov AV, Sengupta J, Valle M, Grassucci RA, Linde J, Vestergaard B, Ehrenberg M, Frank J. A cryo-electron microscopic study of ribosome-bound termination factor RF2. Nature. 421: 87-90. PMID 12511960 DOI: 10.1038/nature01224  0.36
2002 Stagg SM, Valle M, Agrawal RK, Frank J, Harvey SC. Problems with the transorientation hypothesis. Rna (New York, N.Y.). 8: 1093-4. PMID 12358427 DOI: 10.1017/S1355838202027061  0.72
2002 Valle M, Sengupta J, Swami NK, Grassucci RA, Burkhardt N, Nierhaus KH, Agrawal RK, Frank J. Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process. The Embo Journal. 21: 3557-67. PMID 12093756 DOI: 10.1093/emboj/cdf326  0.36
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