Year |
Citation |
Score |
2023 |
Freiberger MI, Ruiz-Serra V, Pontes C, Romero-Durana M, Galaz-Davison P, Ramírez-Sarmiento CA, Schuster CD, Marti MA, Wolynes PG, Ferreiro DU, Parra RG, Valencia A. Local energetic frustration conservation in protein families and superfamilies. Nature Communications. 14: 8379. PMID 38104123 DOI: 10.1038/s41467-023-43801-2 |
0.362 |
|
2023 |
Lopez-Robles C, Scaramuzza S, Astorga-Simon EN, Ishida M, Williamson CD, Baños-Mateos S, Gil-Carton D, Romero-Durana M, Vidaurrazaga A, Fernandez-Recio J, Rojas AL, Bonifacino JS, Castaño-Díez D, Hierro A. Architecture of the ESCPE-1 membrane coat. Nature Structural & Molecular Biology. PMID 37322239 DOI: 10.1038/s41594-023-01014-7 |
0.555 |
|
2020 |
Romero-Durana M, Jiménez-García B, Fernández-Recio J. pyDockEneRes: per-residue decomposition of protein-protein docking energy. Bioinformatics (Oxford, England). 36: 2284-2285. PMID 31808797 DOI: 10.1093/bioinformatics/btz884 |
0.743 |
|
2019 |
Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Jiménez-García B, Díaz L, Fernández-Recio J. Integrative modeling of protein-protein interactions with pyDock for the new docking challenges. Proteins. PMID 31746039 DOI: 10.1002/prot.25858 |
0.793 |
|
2019 |
Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, ... ... Romero-Durana M, et al. Blind prediction of homo- and hetero- protein complexes: The CASP13-CAPRI experiment. Proteins. PMID 31612567 DOI: 10.1002/Prot.25838 |
0.618 |
|
2018 |
Jiménez-García B, Roel-Touris J, Romero-Durana M, Vidal M, Jiménez-González D, Fernández-Recio J. LightDock: a new multi-scale approach to protein-protein docking. Bioinformatics (Oxford, England). 34: 49-55. PMID 28968719 DOI: 10.1093/bioinformatics/btx555 |
0.732 |
|
2017 |
Romero-Durana M, Pallara C, Glaser F, Fernández-Recio J. Modeling Binding Affinity of Pathological Mutations for Computational Protein Design. Methods in Molecular Biology (Clifton, N.J.). 1529: 139-159. PMID 27914049 DOI: 10.1007/978-1-4939-6637-0_6 |
0.83 |
|
2016 |
Pérez-Cano L, Romero-Durana M, Fernández-Recio J. Structural and energy determinants in protein-RNA docking. Methods (San Diego, Calif.). 163-170. PMID 27816523 DOI: 10.1016/j.ymeth.2016.11.001 |
0.821 |
|
2016 |
Lensink MF, Velankar S, Kryshtafovych A, Huang SY, Schneidman-Duhovny D, Sali A, Segura J, Fernandez-Fuentes N, Viswanath S, Elber R, Grudinin S, Popov P, Neveu E, Lee H, Baek M, ... ... Romero-Durana M, et al. Prediction of homo- and hetero-protein complexes by protein docking and template-based modeling: a CASP-CAPRI experiment. Proteins. PMID 27122118 DOI: 10.1002/Prot.25007 |
0.848 |
|
2013 |
Pallara C, Jiménez-García B, Pérez-Cano L, Romero-Durana M, Solernou A, Grosdidier S, Pons C, Moal IH, Fernandez-Recio J. Expanding the frontiers of protein-protein modeling: from docking and scoring to binding affinity predictions and other challenges. Proteins. 81: 2192-200. PMID 23934865 DOI: 10.1002/prot.24387 |
0.701 |
|
2013 |
Moretti R, Fleishman SJ, Agius R, Torchala M, Bates PA, Kastritis PL, Rodrigues JP, Trellet M, Bonvin AM, Cui M, Rooman M, Gillis D, Dehouck Y, Moal I, Romero-Durana M, et al. Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions. Proteins. 81: 1980-7. PMID 23843247 DOI: 10.1002/Prot.24356 |
0.765 |
|
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