Robert P. Sebra, Ph.D. - Publications

Affiliations: 
2005 University of Colorado, Boulder, Boulder, CO, United States 

40/166 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Li J, Li JW, Feng Z, Wang J, An H, Liu Y, Wang Y, Wang K, Zhang X, Miao Z, Liang W, Sebra R, Wang G, Wang WC, Zhang JR. Epigenetic Switch Driven by DNA Inversions Dictates Phase Variation in Streptococcus pneumoniae. Plos Pathogens. 12: e1005762. PMID 27427949 DOI: 10.1371/Journal.Ppat.1005762  1
2016 Stoesser N, Sheppard AE, Pankhurst L, De Maio N, Moore CE, Sebra R, Turner P, Anson LW, Kasarskis A, Batty EM, Kos V, Wilson DJ, Phetsouvanh R, Wyllie D, Sokurenko E, et al. Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131. Mbio. 7. PMID 27006459 DOI: 10.1128/Mbio.02162-15  1
2016 Poon LL, Song T, Rosenfeld R, Lin X, Rogers MB, Zhou B, Sebra R, Halpin RA, Guan Y, Twaddle A, DePasse JV, Stockwell TB, Wentworth DE, Holmes EC, Greenbaum B, et al. Quantifying influenza virus diversity and transmission in humans. Nature Genetics. PMID 26727660 DOI: 10.1038/Ng.3479  1
2015 Pereira E, Camacho-Vanegas O, Anand S, Sebra R, Catalina Camacho S, Garnar-Wortzel L, Nair N, Moshier E, Wooten M, Uzilov A, Chen R, Prasad-Hayes M, Zakashansky K, Beddoe AM, Schadt E, et al. Personalized Circulating Tumor DNA Biomarkers Dynamically Predict Treatment Response and Survival In Gynecologic Cancers. Plos One. 10: e0145754. PMID 26717006 DOI: 10.1371/Journal.Pone.0145754  1
2015 Akbarian S, Liu C, Knowles JA, Vaccarino FM, Farnham PJ, Crawford GE, Jaffe AE, Pinto D, Dracheva S, Geschwind DH, Mill J, Nairn AC, Abyzov A, Pochareddy S, Prabhakar S, ... ... Sebra R, et al. The PsychENCODE project. Nature Neuroscience. 18: 1707-1712. PMID 26605881 DOI: 10.1038/Nn.4156  1
2015 Qiao W, Yang Y, Sebra R, Mendiratta G, Gaedigk A, Desnick RJ, Scott SA. Long-Read Single-Molecule Real-Time (SMRT) Full Gene Sequencing of Cytochrome P450-2D6 (CYP2D6). Human Mutation. PMID 26602992 DOI: 10.1002/Humu.22936  1
2015 Tufariello JM, Kerantzas CA, Vilchèze C, Calder RB, Nordberg EK, Fischer JA, Hartman TE, Yang E, Driscoll T, Cole LE, Sebra R, Maqbool SB, Wattam AR, Jacobs WR. The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements. Mbio. 6. PMID 26578674 DOI: 10.1128/Mbio.01313-15  1
2015 Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Hsi-Yang Fritz M, Konkel MK, Malhotra A, Stütz AM, Shi X, Paolo Casale F, ... ... Sebra R, et al. An integrated map of structural variation in 2,504 human genomes. Nature. 526: 75-81. PMID 26432246 DOI: 10.1038/Nature15394  1
2015 Panesso D, Planet PJ, Diaz L, Hugonnet JE, Tran TT, Narechania A, Munita JM, Rincon S, Carvajal LP, Reyes J, Londoño A, Smith H, Sebra R, Deikus G, Weinstock GM, et al. Methicillin-Susceptible, Vancomycin-Resistant Staphylococcus aureus, Brazil. Emerging Infectious Diseases. 21: 1844-8. PMID 26402569 DOI: 10.3201/Eid2110.141914  1
2015 Pak TR, Altman DR, Attie O, Sebra R, Hamula CL, Lewis M, Deikus G, Newman LC, Fang G, Hand J, Patel G, Wallach F, Schadt EE, Huprikar S, van Bakel H, et al. Whole-genome sequencing identifies emergence of a quinolone resistance mutation in a case of Stenotrophomonas maltophilia bacteremia. Antimicrobial Agents and Chemotherapy. PMID 26324280 DOI: 10.1128/Aac.01723-15  1
2015 Pendleton M, Sebra R, Pang AW, Ummat A, Franzen O, Rausch T, Stütz AM, Stedman W, Anantharaman T, Hastie A, Dai H, Fritz MH, Cao H, Cohain A, Deikus G, et al. Assembly and diploid architecture of an individual human genome via single-molecule technologies. Nature Methods. PMID 26121404 DOI: 10.1038/Nmeth.3454  1
2015 Beaulaurier J, Zhang XS, Zhu S, Sebra R, Rosenbluh C, Deikus G, Shen N, Munera D, Waldor MK, Chess A, Blaser MJ, Schadt EE, Fang G. Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes. Nature Communications. 6: 7438. PMID 26074426 DOI: 10.1038/Ncomms8438  1
2015 Planet PJ, Diaz L, Kolokotronis SO, Narechania A, Reyes J, Xing G, Rincon S, Smith H, Panesso D, Ryan C, Smith DP, Guzman M, Zurita J, Sebra R, Deikus G, et al. Parallel Epidemics of Community-Associated Methicillin-Resistant Staphylococcus aureus USA300 Infection in North and South America. The Journal of Infectious Diseases. PMID 26048971 DOI: 10.1093/Infdis/Jiv320  1
2015 Yang Y, Sebra R, Pullman BS, Qiao W, Peter I, Desnick RJ, Geyer CR, DeCoteau JF, Scott SA. Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS). Bmc Genomics. 16: 350. PMID 25943404 DOI: 10.1186/S12864-015-1572-7  1
2015 Rogers MB, Song T, Sebra R, Greenbaum BD, Hamelin ME, Fitch A, Twaddle A, Cui L, Holmes EC, Boivin G, Ghedin E. Intrahost dynamics of antiviral resistance in influenza A virus reflect complex patterns of segment linkage, reassortment, and natural selection. Mbio. 6. PMID 25852163 DOI: 10.1128/Mbio.02464-14  1
2015 Smith CC, Zhang C, Lin KC, Lasater EA, Zhang Y, Massi E, Damon LE, Pendleton M, Bashir A, Sebra R, Perl A, Kasarskis A, Shellooe R, Tsang G, Carias H, et al. Characterizing and Overriding the Structural Mechanism of the Quizartinib-Resistant FLT3 "Gatekeeper" F691L Mutation with PLX3397. Cancer Discovery. 5: 668-79. PMID 25847190 DOI: 10.1158/2159-8290.Cd-15-0060  1
2015 Mathers AJ, Stoesser N, Sheppard AE, Pankhurst L, Giess A, Yeh AJ, Didelot X, Turner SD, Sebra R, Kasarskis A, Peto T, Crook D, Sifri CD. Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing. Antimicrobial Agents and Chemotherapy. 59: 1656-63. PMID 25561339 DOI: 10.1128/Aac.04292-14  1
2014 Stoesser N, Giess A, Batty EM, Sheppard AE, Walker AS, Wilson DJ, Didelot X, Bashir A, Sebra R, Kasarskis A, Sthapit B, Shakya M, Kelly D, Pollard AJ, Peto TE, et al. Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting. Antimicrobial Agents and Chemotherapy. 58: 7347-57. PMID 25267672 DOI: 10.1128/Aac.03900-14  1
2014 Altman DR, Sebra R, Hand J, Attie O, Deikus G, Carpini KW, Patel G, Rana M, Arvelakis A, Grewal P, Dutta J, Rose H, Shopsin B, Daefler S, Schadt E, et al. Transmission of methicillin-resistant Staphylococcus aureus via deceased donor liver transplantation confirmed by whole genome sequencing. American Journal of Transplantation : Official Journal of the American Society of Transplantation and the American Society of Transplant Surgeons. 14: 2640-4. PMID 25250641 DOI: 10.1111/Ajt.12897  1
2014 Chen X, Bracht JR, Goldman AD, Dolzhenko E, Clay DM, Swart EC, Perlman DH, Doak TG, Stuart A, Amemiya CT, Sebra RP, Landweber LF. The architecture of a scrambled genome reveals massive levels of genomic rearrangement during development. Cell. 158: 1187-98. PMID 25171416 DOI: 10.1016/J.Cell.2014.07.034  1
2014 Benson MA, Ohneck EA, Ryan C, Alonzo F, Smith H, Narechania A, Kolokotronis SO, Satola SW, Uhlemann AC, Sebra R, Deikus G, Shopsin B, Planet PJ, Torres VJ. Evolution of hypervirulence by a MRSA clone through acquisition of a transposable element. Molecular Microbiology. 93: 664-81. PMID 24962815 DOI: 10.1111/Mmi.12682  1
2014 Brinzevich D, Young GR, Sebra R, Ayllon J, Maio SM, Deikus G, Chen BK, Fernandez-Sesma A, Simon V, Mulder LC. HIV-1 interacts with human endogenous retrovirus K (HML-2) envelopes derived from human primary lymphocytes. Journal of Virology. 88: 6213-23. PMID 24648457 DOI: 10.1128/Jvi.00669-14  1
2013 Melters DP, Bradnam KR, Young HA, Telis N, May MR, Ruby JG, Sebra R, Peluso P, Eid J, Rank D, Garcia JF, DeRisi JL, Smith T, Tobias C, Ross-Ibarra J, et al. Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution. Genome Biology. 14: R10. PMID 23363705 DOI: 10.1186/Gb-2013-14-1-R10  1
2012 Bashir A, Klammer AA, Robins WP, Chin CS, Webster D, Paxinos E, Hsu D, Ashby M, Wang S, Peluso P, Sebra R, Sorenson J, Bullard J, Yen J, Valdovino M, et al. A hybrid approach for the automated finishing of bacterial genomes. Nature Biotechnology. 30: 701-7. PMID 22750883 DOI: 10.1038/Nbt.2288  1
2011 Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, et al. Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. The New England Journal of Medicine. 365: 709-17. PMID 21793740 DOI: 10.1056/Nejmoa1106920  1
2009 Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, ... ... Sebra R, et al. Real-time DNA sequencing from single polymerase molecules. Science (New York, N.Y.). 323: 133-8. PMID 19023044 DOI: 10.1126/Science.1162986  1
2008 Watts MPC, Cramer N, Sebra R, Simms H, Masters K, Haraldsson T, Anseth K, Bowman C. Advances in the fabrication of surface modified micro-fluidic devices in non - Fluorescing UV cured materials Proceedings of Spie - the International Society For Optical Engineering. 6882. DOI: 10.1117/12.758755  1
2007 Sebra RP, Reddy SK, Masters KS, Bowman CN, Anseth KS. Controlled polymerization chemistry to graft architectures that influence cell-material interactions. Acta Biomaterialia. 3: 151-61. PMID 17236829 DOI: 10.1016/J.Actbio.2006.07.010  1
2006 Sebra RP, Masters KS, Cheung CY, Bowman CN, Anseth KS. Detection of antigens in biologically complex fluids with photografted whole antibodies. Analytical Chemistry. 78: 3144-51. PMID 16643006 DOI: 10.1021/Ac052246Y  1
2006 Sebra RP, Kasko AM, Anseth KS, Bowman CN. Synthesis and photografting of highly pH-responsive polymer chains Sensors and Actuators, B: Chemical. 119: 127-134. DOI: 10.1016/J.Snb.2005.11.066  1
2006 Haraldsson KT, Hutchison JB, Sebra RP, Good BT, Anseth KS, Bowman CN. 3D polymeric microfluidic device fabrication via contact liquid photolithographic polymerization (CLiPP) Sensors and Actuators, B: Chemical. 113: 454-460. DOI: 10.1016/J.Snb.2005.03.096  1
2006 Sebra RP, Anseth KS, Bowman CN. Integrated surface modification of fully polymeric microfluidic devices using living radical photopolymerization chemistry Journal of Polymer Science, Part a: Polymer Chemistry. 44: 1404-1413. DOI: 10.1002/Pola.21247  1
2005 Sebra RP, Masters KS, Bowman CN, Anseth KS. Surface grafted antibodies: controlled architecture permits enhanced antigen detection. Langmuir : the Acs Journal of Surfaces and Colloids. 21: 10907-11. PMID 16285751 DOI: 10.1021/La052101M  1
2005 Reddy SK, Sebra RP, Anseth KS, Bowman CN. Living radical photopolymerization induced grafting on thiol-ene based substrates Journal of Polymer Science, Part a: Polymer Chemistry. 43: 2134-2144. DOI: 10.1002/Pola.20693  1
2004 Hutchison JB, Haraldsson KT, Good BT, Sebra RP, Luo N, Anseth KS, Bowman CN. Robust polymer microfluidic device fabrication via contact liquid photolithographic polymerization (CLiPP). Lab On a Chip. 4: 658-62. PMID 15570381 DOI: 10.1039/B405985A  1
2004 Sebra RP, Masters KS, Bowman CN, Anseth KS. A rapid antigen detection assay using photografted whole antibodies Aiche Annual Meeting, Conference Proceedings. 2211-2213.  1
2004 Sebra RP, Masters KS, Bowman CN, Anseth KS. Synthesis of antimers for photografting on polymeric surfaces using living radical photopolymerization techniques Transactions - 7th World Biomaterials Congress. 500.  1
2002 Shenoy S, Woerdeman D, Sebra R, Garach-Domech A, Wynne KJ. Quantifying polymer swelling employing a linear variable differential transformer: CO2 effects on SBS triblock copolymer Macromolecular Rapid Communications. 23: 1130-1133. DOI: 10.1002/Marc.200290007  1
2002 Sebra RP, Haraldsson KT, Luo N, Hutchison JB, Anseth KS, Bowman CN. 3D-Microfluidic devices using liquid polymer precursors American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 43: 132-133.  1
2002 Wynne KJ, Shenoy S, Fujiwara T, Irie S, Woerdeman D, Sebra R, Garach A, McHugh M. Supercritical and liquid CO2: Polymer swelling and effects on melting behavior American Chemical Society, Polymer Preprints, Division of Polymer Chemistry. 43: 888.  1
Low-probability matches
2021 Wang L, Sfakianos JP, Beaumont KG, Akturk G, Horowitz A, Sebra RP, Farkas AM, Gnjatic S, Hake A, Izadmehr S, Wiklund P, Oh WK, Szabo PM, Wind-Rotolo M, Unsal-Kacmaz K, et al. Myeloid Cell-associated Resistance to PD-1/PD-L1 Blockade in Urothelial Cancer Revealed Through Bulk and Single-cell RNA Sequencing. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33837006 DOI: 10.1158/1078-0432.CCR-20-4574  0.04
2020 Beaumont KG, Beaumont MA, Sebra R. Application of Single-Cell Sequencing to Immunotherapy. The Urologic Clinics of North America. 47: 475-485. PMID 33008498 DOI: 10.1016/J.Ucl.2020.07.005  0.04
2020 Charney AW, Simons NW, Mouskas K, Lepow L, Cheng E, Le Berichel J, Chang C, Marvin R, Del Valle DM, Calorossi S, Lansky A, Walker L, Patel M, Xie H, Yi N, ... ... Sebra R, et al. Author Correction: Sampling the host response to SARS-CoV-2 in hospitals under siege. Nature Medicine. PMID 32826990 DOI: 10.1038/S41591-020-1057-3  0.01
2020 Gill CM, Loewenstern J, Rutland JW, Arib H, Pain M, Umphlett M, Kinoshita Y, McBride RB, Bederson J, Donovan M, Sebra R, Fowkes M, Shrivastava RK. Peritumoral edema correlates with mutational burden in meningiomas. Neuroradiology. PMID 32789536 DOI: 10.1007/S00234-020-02515-8  0.01
2020 Charney AW, Simons NW, Mouskas K, Lepow L, Cheng E, Le Berichel J, Chang C, Marvin R, Del Valle DM, Calorossi S, Lansky A, Walker L, Patel M, Xie H, Yi N, ... ... Sebra R, et al. Sampling the host response to SARS-CoV-2 in hospitals under siege. Nature Medicine. PMID 32719485 DOI: 10.1038/S41591-020-1004-3  0.01
2020 Rutland JW, Gill CM, Loewenstern J, Arib H, Pain M, Umphlett M, Kinoshita Y, McBride RB, Bederson J, Donovan M, Sebra R, Shrivastava RK, Fowkes M. NF2 mutation status and tumor mutational burden correlate with immune cell infiltration in meningiomas. Cancer Immunology, Immunotherapy : Cii. PMID 32661686 DOI: 10.1007/S00262-020-02671-Z  0.01
2020 Holmes G, Gonzalez-Reiche AS, Lu N, Zhou X, Rivera J, Kriti D, Sebra R, Williams AA, Donovan MJ, Potter SS, Pinto D, Zhang B, van Bakel H, Jabs EW. Integrated Transcriptome and Network Analysis Reveals Spatiotemporal Dynamics of Calvarial Suturogenesis. Cell Reports. 32: 107871. PMID 32640236 DOI: 10.1016/J.Celrep.2020.107871  0.01
2020 Lacaze P, Sebra R, Riaz M, Tiller J, Revote J, Phung J, Parker EJ, Orchard SG, Lockery JE, Wolfe R, Strahl M, Wang YC, Chen R, Sisco D, Arnold T, et al. Medically actionable pathogenic variants in a population of 13,131 healthy elderly individuals. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 32606442 DOI: 10.1038/S41436-020-0881-7  0.04
2020 Gonzalez-Reiche AS, Hernandez MM, Sullivan MJ, Ciferri B, Alshammary H, Obla A, Fabre S, Kleiner G, Polanco J, Khan Z, Alburquerque B, van de Guchte A, Dutta J, Francoeur N, Melo BS, ... ... Sebra R, et al. Introductions and early spread of SARS-CoV-2 in the New York City area. Science (New York, N.Y.). PMID 32471856 DOI: 10.1126/Science.Abc1917  0.04
2020 Sheynkman GM, Tuttle KS, Laval F, Tseng E, Underwood JG, Yu L, Dong D, Smith ML, Sebra R, Willems L, Hao T, Calderwood MA, Hill DE, Vidal M. ORF Capture-Seq as a versatile method for targeted identification of full-length isoforms. Nature Communications. 11: 2326. PMID 32393825 DOI: 10.1038/S41467-020-16174-Z  0.01
2020 Smith SL, Kennedy PR, Stacey KB, Worboys JD, Yarwood A, Seo S, Solloa EH, Mistretta B, Chatterjee SS, Gunaratne P, Allette K, Wang YC, Smith ML, Sebra R, Mace EM, et al. Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing. Blood Advances. 4: 1388-1406. PMID 32271902 DOI: 10.1182/Bloodadvances.2019000699  0.01
2020 Gill CM, Loewenstern J, Rutland JW, Arib H, Pain M, Umphlett M, Kinoshita Y, McBride RB, Bederson J, Donovan M, Sebra R, Fowkes M, Shrivastava RK. STK11 mutation status is associated with decreased survival in meningiomas. Neurological Sciences : Official Journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology. PMID 32253637 DOI: 10.1007/S10072-020-04372-Y  0.01
2020 Gallitto M, Cheng He R, Inocencio JF, Wang H, Zhang Y, Deikus G, Wasserman I, Strahl M, Smith M, Sebra R, Yong RL. Epigenetic preconditioning with decitabine sensitizes glioblastoma to temozolomide via induction of MLH1. Journal of Neuro-Oncology. PMID 32193690 DOI: 10.1007/S11060-020-03461-4  0.01
2020 Gill CM, Loewenstern J, Rutland JW, Arib H, Francoeur N, Wang YC, Fishman N, Pain M, Umphlett M, Kinoshita Y, McBride RB, Bederson J, Donovan M, Smith M, Sebra R, et al. Recurrent IDH Mutations in High-Grade Meningioma. Neuro-Oncology. PMID 32179909 DOI: 10.1093/Neuonc/Noaa065  0.01
2020 Wang L, Sebra RP, Sfakianos JP, Allette K, Wang W, Yoo S, Bhardwaj N, Schadt EE, Yao X, Galsky MD, Zhu J. A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles. Genome Medicine. 12: 24. PMID 32111252 DOI: 10.1186/S13073-020-0720-0  0.01
2020 Stoesser N, Phan HTT, Seale AC, Aiken Z, Thomas S, Smith M, Wyllie D, George R, Sebra R, Mathers AJ, Vaughan A, Peto TEA, Ellington MJ, Hopkins KL, Crook DW, et al. Genomic epidemiology of complex, multi-species, plasmid-borne carbapenemase in Enterobacterales in the UK, 2009-2014. Antimicrobial Agents and Chemotherapy. PMID 32094139 DOI: 10.1128/Aac.02244-19  0.01
2020 Lacaze P, Ronaldson KJ, Zhang EJ, Alfirevic A, Shah H, Newman L, Strahl M, Smith M, Bousman C, Francis B, Morris AP, Wilson T, Rossello F, Powell D, Vasic V, ... Sebra R, et al. Genetic associations with clozapine-induced myocarditis in patients with schizophrenia. Translational Psychiatry. 10: 37. PMID 32066683 DOI: 10.1038/S41398-020-0722-0  0.01
2020 Losic B, Craig AJ, Villacorta-Martin C, Martins-Filho SN, Akers N, Chen X, Ahsen ME, von Felden J, Labgaa I, DʹAvola D, Allette K, Lira SA, Furtado GC, Garcia-Lezana T, Restrepo P, ... ... Sebra R, et al. Intratumoral heterogeneity and clonal evolution in liver cancer. Nature Communications. 11: 291. PMID 31941899 DOI: 10.1038/S41467-019-14050-Z  0.01
2020 Wang C, Forst CV, Chou TW, Geber A, Wang M, Hamou W, Smith M, Sebra R, Zhang B, Zhou B, Ghedin E. Cell-to-Cell Variation in Defective Virus Expression and Effects on Host Responses during Influenza Virus Infection. Mbio. 11. PMID 31937643 DOI: 10.1128/Mbio.02880-19  0.01
2020 Voskoboinik I, Lacaze P, Jang HS, Flinsenberg T, Fernando SL, Kerridge I, Riaz M, Sebra R, Thia K, Noori T, Schadt EE, McNeil JJ, Trapani JA. Prevalence and disease predisposition of p.A91V perforin in an aged Caucasian population. Blood. PMID 31932842 DOI: 10.1182/Blood.2019003487  0.01
2020 Seiden AH, Richter F, Patel N, Rodriguez OL, Deikus G, Shah H, Smith M, Roberts A, King EC, Sebra RP, Sharp AJ, Gelb BD. Elucidation of de novo small insertion/deletion biology with parent-of-origin phasing. Human Mutation. PMID 31898844 DOI: 10.1002/Humu.23971  0.01
2020 Irie HY, Schmidt P, Port E, Berger N, Klein P, Kinoshita Y, Soto A, Pisapati K, Couri R, Kolodka O, Arib H, Sebra R, Donovan MJ. Abstract P5-01-09: Prospective genomic and PD-L1 profiling of patients with residual triple negative breast cancer after neoadjuvant chemotherapy Cancer Research. DOI: 10.1158/1538-7445.Sabcs19-P5-01-09  0.04
2020 Chakravarty D, Wang Z, Rossi M, Ratnani P, Reva B, Rykunov D, Bhatt K, Wagaskar V, Weil R, Beaumont K, Beaumont M, Maayan A, Sebra R, Bhardwaj N, Nair SS, et al. Abstract 1313: Genomic and transcriptomic profiles of primary prostate cancer identify unique targets for therapeutic intervention Cancer Research. 80: 1313-1313. DOI: 10.1158/1538-7445.Am2020-1313  0.01
2019 Gweon HS, Shaw LP, Swann J, De Maio N, AbuOun M, Niehus R, Hubbard ATM, Bowes MJ, Bailey MJ, Peto TEA, Hoosdally SJ, Walker AS, Sebra RP, Crook DW, Anjum MF, et al. The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples. Environmental Microbiome. 14: 7. PMID 33902704 DOI: 10.1186/s40793-019-0347-1  0.01
2019 Lindblad KA, Pathmanathan JS, Moreira S, Bracht JR, Sebra RP, Hutton ER, Landweber LF. Capture of complete ciliate chromosomes in single sequencing reads reveals widespread chromosome isoforms. Bmc Genomics. 20: 1037. PMID 31888453 DOI: 10.1186/S12864-019-6189-9  0.01
2019 Gill CM, Loewenstern J, Rutland JW, Arib H, Pain M, Umphlett M, Kinoshita Y, McBride RB, Bederson J, Donovan M, Sebra R, Fowkes M, Shrivastava RK. In Reply: Retention of ATRX and DAXX Expression in Meningiomas. Neurosurgery. PMID 31803910 DOI: 10.1093/Neuros/Nyz504  0.01
2019 Flaherty E, Zhu S, Barretto N, Cheng E, Deans PJM, Fernando MB, Schrode N, Francoeur N, Antoine A, Alganem K, Halpern M, Deikus G, Shah H, Fitzgerald M, Ladran I, ... ... Sebra R, et al. Neuronal impact of patient-specific aberrant NRXN1α splicing. Nature Genetics. 51: 1679-1690. PMID 31784728 DOI: 10.1038/S41588-019-0539-Z  0.04
2019 Oliveira PH, Ribis JW, Garrett EM, Trzilova D, Kim A, Sekulovic O, Mead EA, Pak T, Zhu S, Deikus G, Touchon M, Lewis-Sandari M, Beckford C, Zeitouni NE, Altman DR, ... ... Sebra R, et al. Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis. Nature Microbiology. PMID 31768029 DOI: 10.1038/S41564-019-0613-4  0.04
2019 Weinstein DJ, Allen SE, Lau MCY, Erasmus M, Asalone KC, Walters-Conte K, Deikus G, Sebra R, Borgonie G, van Heerden E, Onstott TC, Bracht JR. The genome of a subterrestrial nematode reveals adaptations to heat. Nature Communications. 10: 5268. PMID 31754114 DOI: 10.1038/S41467-019-13245-8  0.01
2019 Harrison A, Hardison RL, Wallace RM, Fitch J, Heimlich DR, Bryan MO, Dubois L, John-Williams LS, Sebra RP, White P, Moseley MA, Thompson JW, Justice SS, Mason KM. Reprioritization of biofilm metabolism is associated with nutrient adaptation and long-term survival of . Npj Biofilms and Microbiomes. 5: 33. PMID 31700653 DOI: 10.1038/s41522-019-0105-6  0.01
2019 Vasan N, Razavi P, Johnson JL, Shao H, Shah H, Antoine A, Ladewig E, Gorelick A, Lin TY, Toska E, Xu G, Kazmi A, Chang MT, Taylor BS, Dickler MN, ... ... Sebra R, et al. Double mutations in cis increase oncogenicity and sensitivity to PI3Kα inhibitors. Science (New York, N.Y.). 366: 714-723. PMID 31699932 DOI: 10.1126/Science.Aaw9032  0.01
2019 Dupper AC, Sullivan MJ, Chacko KI, Mishkin A, Ciferri B, Kumaresh A, Berbel Caban A, Oussenko I, Beckford C, Zeitouni NE, Sebra R, Hamula C, Smith M, Kasarskis A, Patel G, et al. Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Clones. Open Forum Infectious Diseases. 6: ofz302. PMID 31660395 DOI: 10.1093/Ofid/Ofz302  0.04
2019 Sullivan MJ, Altman DR, Chacko KI, Ciferri B, Webster E, Pak TR, Deikus G, Lewis-Sandari M, Khan Z, Beckford C, Rendo A, Samaroo F, Sebra R, Karam-Howlin R, Dingle T, et al. A complete genome screening program of clinical methicillin-resistant isolates identifies the origin and progression of a neonatal intensive care unit outbreak. Journal of Clinical Microbiology. PMID 31578260 DOI: 10.1128/Jcm.01261-19  0.04
2019 Huq AJ, Fransquet P, Laws SM, Ryan J, Sebra R, Masters CL, Winship IM, James PA, Lacaze P. Genetic resilience to Alzheimer's disease in APOE ε4 homozygotes: A systematic review. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 31506248 DOI: 10.1016/J.Jalz.2019.05.011  0.01
2019 Wang YC, Olson ND, Deikus G, Shah H, Wenger AM, Trow J, Xiao C, Sherry S, Salit ML, Zook JM, Smith M, Sebra R. High-coverage, long-read sequencing of Han Chinese trio reference samples. Scientific Data. 6: 91. PMID 31201313 DOI: 10.1038/S41597-019-0098-2  0.01
2019 Loewenstern J, Rutland J, Gill C, Arib H, Pain M, Umphlett M, Kinoshita Y, McBride R, Donovan M, Sebra R, Bederson J, Fowkes M, Shrivastava R. Comparative genomic analysis of driver mutations in matched primary and recurrent meningiomas. Oncotarget. 10: 3506-3517. PMID 31191822 DOI: 10.18632/Oncotarget.26941  0.01
2019 Bangi E, Ang C, Smibert P, Uzilov AV, Teague AG, Antipin Y, Chen R, Hecht C, Gruszczynski N, Yon WJ, Malyshev D, Laspina D, Selkridge I, Rainey H, Moe AS, ... ... Sebra R, et al. A personalized platform identifies trametinib plus zoledronate for a patient with KRAS-mutant metastatic colorectal cancer. Science Advances. 5: eaav6528. PMID 31131321 DOI: 10.1126/Sciadv.Aav6528  0.01
2019 Beh LY, Debelouchina GT, Clay DM, Thompson RE, Lindblad KA, Hutton ER, Bracht JR, Sebra RP, Muir TW, Landweber LF. Identification of a DNA N6-Adenine Methyltransferase Complex and Its Impact on Chromatin Organization. Cell. PMID 31104845 DOI: 10.1016/J.Cell.2019.04.028  0.01
2019 Yang X, Yuan T, Ma R, Chacko K, Smith M, Deikus G, Sebra R, Kasarkskis A, van Bakel H, Franzblau SG, Sampson NS. The Mce3R stress-resistance pathway is vulnerable to small molecule targeting that improves tuberculosis drug activities. Acs Infectious Diseases. PMID 31012313 DOI: 10.1021/Acsinfecdis.9B00099  0.04
2019 Rooney CM, Sheppard AE, Clark E, Davies K, Hubbard ATM, Sebra R, Crook DW, Walker AS, Wilcox MH, Chilton CH. Dissemination of multiple carbapenem resistance genes in an in vitro gut model simulating the human colon. The Journal of Antimicrobial Chemotherapy. PMID 30989197 DOI: 10.1093/Jac/Dkz106  0.01
2019 Deslattes Mays A, Schmidt M, Graham G, Tseng E, Baybayan P, Sebra R, Sanda M, Mazarati JB, Riegel A, Wellstein A. Single-Molecule Real-Time (SMRT) Full-Length RNA-Sequencing Reveals Novel and Distinct mRNA Isoforms in Human Bone Marrow Cell Subpopulations. Genes. 10. PMID 30934798 DOI: 10.3390/Genes10040253  0.01
2019 Barry KE, Wailan AM, Sheppard AE, Crook D, Vegesana K, Stoesser N, Parikh HI, Sebra R, Mathers AJ. Don't overlook the little guy: An evaluation of the frequency of small plasmids co-conjugating with larger carbapenemase gene containing plasmids. Plasmid. 103: 1-8. PMID 30928702 DOI: 10.1016/J.Plasmid.2019.03.005  0.01
2019 Mathers AJ, Crook D, Vaughan A, Barry K, Vegesana K, Stoesser N, Parikh HI, Sebra R, Kotay S, Walker AS, Sheppard AE. provides a window into carbapenemase gene transfer, plasmid rearrangements and patient interactions with the hospital environment. Antimicrobial Agents and Chemotherapy. PMID 30910889 DOI: 10.1128/Aac.02513-18  0.01
2019 Copin R, Sause WE, Fulmer Y, Balasubramanian D, Dyzenhaus S, Ahmed JM, Kumar K, Lees J, Stachel A, Fisher JC, Drlica K, Phillips M, Weiser JN, Planet PJ, Uhlemann AC, ... ... Sebra R, et al. Sequential evolution of virulence and resistance during clonal spread of community-acquired methicillin-resistant . Proceedings of the National Academy of Sciences of the United States of America. PMID 30635416 DOI: 10.1073/Pnas.1814265116  0.04
2019 Felden Jv, Craig AJ, Ahsen ME, Labgaa I, D'Avola D, Meza GH, Allette K, Dogra N, Lezana TG, Tabrizian P, Asgharpour A, Dieterich D, Sebra R, Stolovitzky G, Schwartz M, et al. Abstract 402: RNA-sequencing of plasma exosomes reveals specific transcriptomic profiles in patients with hepatocellular carcinoma Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-402  0.01
2019 Vasan N, Razavi P, Johnson J, Shao H, Shah H, Antoine A, Ladewig E, Gorelick A, Toska E, Xu G, Kazmi A, Chang MT, Taylor BS, Dickler MN, Jhaveri K, ... ... Sebra R, et al. Abstract 3917: DoublePIK3CAmutations incisenhance oncogene activation and sensitivity to PI3K alpha inhibitors in breast cancer Cancer Research. 79: 3917-3917. DOI: 10.1158/1538-7445.Am2019-3917  0.01
2019 Pandya DS, Tomita S, Camacho O, Swierczek S, Camacho C, Engelman K, Polukort S, Padron MM, RoseFigura J, Irish J, Chuang L, Andikyan V, Cohen S, Fiedler P, Sieber S, ... ... Sebra R, et al. Abstract 2729: Development of a targeted liquid biopsy for early gynecologic cancer detection leads to discovery of a highly prevalent genomic landscape of cancer driver gene mutations in uterine tissue from women without cancer Cancer Research. 79: 2729-2729. DOI: 10.1158/1538-7445.Am2019-2729  0.01
2019 Fijneman RJA, Mekkes N, Broek Evd, Stringer B, Glas RA, Komor MA, Rausch C, Lieshout Sv, Cuppen E, Smith ML, Sebra RP, Rowell WJ, Ashby M, Carvalho B, Heringa J, et al. Abstract 1738: Characterization of structural variants within MACROD2 in the pathogenesis of colorectal cancer Cancer Research. DOI: 10.1158/1538-7445.Am2019-1738  0.01
2019 Vasan N, Razavi P, Johnson J, Shao H, Reznik E, Smith M, Sebra R, Cantley L, Scaltriti M, Baselga J. Double PIK3CA mutations in cis enhance PI3Kα oncogene activation and sensitivity to PI3Kα inhibitors in breast cancer Annals of Oncology. 30: iii1. DOI: 10.1093/Annonc/Mdz095  0.01
2019 Nazem TG, Beaumont K, Briton-Jones C, Lee JA, Sebra RP, Copperman AB. Single-cell mitochondrial staining of human blastocysts Fertility and Sterility. 112. DOI: 10.1016/J.Fertnstert.2019.07.457  0.01
2019 Briton-Jones C, Sekhon L, Ellis E, Lee JA, Schadt EE, Sebra RP, Copperman AB. Characterizing meiotic and mitotic errors in the inner cell mass and trophectoderm of poor quality preimplantation embryos Fertility and Sterility. 112. DOI: 10.1016/J.Fertnstert.2019.07.1383  0.01
2019 Absherty E, Zhu S, Cheng E, Antoine A, Halpern M, Deikus G, Gochman P, Rapoport J, Hoffman G, Tsankova N, Crary J, Sebra R, Fang G, Brennand K. 21ABERRANT NRXN1α SPLICING ARISING FROM 2P16.3 HETEROZYGOUS DELETIONS IMPACTS NEURONAL FUNCTION European Neuropsychopharmacology. 29: S1077-S1078. DOI: 10.1016/J.Euroneuro.2018.08.028  0.01
2018 Laverty KU, Stout JM, Sullivan MJ, Shah H, Gill N, Holbrook L, Deikus G, Sebra R, Hughes TR, Page JE, van Bakel H. A physical and genetic map of identifies extensive rearrangement at the THC/CBD acid synthase locus. Genome Research. PMID 30409771 DOI: 10.1101/Gr.242594.118  0.04
2018 Papa L, Zimran E, Djedaini M, Ge Y, Ozbek U, Sebra R, Sealfon SC, Hoffman R. Ex vivo human HSC expansion requires coordination of cellular reprogramming with mitochondrial remodeling and p53 activation. Blood Advances. 2: 2766-2779. PMID 30348672 DOI: 10.1182/Bloodadvances.2018024273  0.01
2018 Müller LSM, Cosentino RO, Förstner KU, Guizetti J, Wedel C, Kaplan N, Janzen CJ, Arampatzi P, Vogel J, Steinbiss S, Otto TD, Saliba AE, Sebra RP, Siegel TN. Genome organization and DNA accessibility control antigenic variation in trypanosomes. Nature. 563: 121-125. PMID 30333624 DOI: 10.1038/S41586-018-0619-8  0.01
2018 Hardison RL, Harrison A, Wallace RM, Heimlich DR, O'Bryan ME, Sebra RP, Pinkett HW, Justice SS, Mason KM. Microevolution in response to transient heme-iron restriction enhances intracellular bacterial community development and persistence. Plos Pathogens. 14: e1007355. PMID 30332468 DOI: 10.1371/Journal.Ppat.1007355  0.01
2018 Decraene V, Phan HTT, George R, Wyllie DH, Akinremi O, Aiken Z, Cleary P, Dodgson A, Pankhurst L, Crook DW, Lenney C, Walker AS, Woodford N, Sebra R, Fath-Ordoubadi F, et al. A large, refractory nosocomial outbreak of carbapenemase (KPC)-producing demonstrates carbapenemase gene outbreaks involving sink sites require novel approaches to infection control. Antimicrobial Agents and Chemotherapy. PMID 30249685 DOI: 10.1128/Aac.01689-18  0.01
2018 Zhao N, Sebastiano V, Moshkina N, Mena N, Hultquist J, Jimenez-Morales D, Ma Y, Rialdi A, Albrecht R, Fenouil R, Sánchez-Aparicio MT, Ayllon J, Ravisankar S, Haddad B, Ho JSY, ... ... Sebra R, et al. Influenza virus infection causes global RNAPII termination defects. Nature Structural & Molecular Biology. PMID 30177761 DOI: 10.1038/S41594-018-0124-7  0.04
2018 D'Avola D, Villacorta-Martin C, Martins-Filho SN, Craig A, Labgaa I, von Felden J, Kimaada A, Bonaccorso A, Tabrizian P, Hartmann BM, Sebra R, Schwartz M, Villanueva A. High-density single cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma. Scientific Reports. 8: 11570. PMID 30068984 DOI: 10.1038/S41598-018-30047-Y  0.01
2018 Altman DR, Sullivan MJ, Chacko KI, Balasubramanian D, Pak TR, Sause WE, Kumar K, Sebra R, Deikus G, Attie O, Rose H, Lewis M, Fulmer Y, Bashir A, Kasarskis A, et al. Genome plasticity of -defective during clinical infection. Infection and Immunity. PMID 30061376 DOI: 10.1128/Iai.00331-18  0.04
2018 Zhu S, Beaulaurier J, Deikus G, Wu T, Strahl M, Hao Z, Luo G, Gregory JA, Chess A, He C, Xiao A, Sebra R, Schadt EE, Fang G. Mapping and characterizing N6-methyladenine in eukaryotic genomes using single molecule real-time sequencing. Genome Research. PMID 29764913 DOI: 10.1101/Gr.231068.117  0.04
2018 Han SY, Antoine A, Howard D, Chang B, Chang WS, Slein M, Deikus G, Kossida S, Duroux P, Lefranc MP, Sebra RP, Smith ML, Fofana IBF. Coupling of Single Molecule, Long Read Sequencing with IMGT/HighV-QUEST Analysis Expedites Identification of SIV gp140-Specific Antibodies from scFv Phage Display Libraries. Frontiers in Immunology. 9: 329. PMID 29545792 DOI: 10.3389/Fimmu.2018.00329  0.01
2018 Pain M, Wang H, Lee E, Strahl M, Hamou W, Sebra R, Zhu J, Yong RL. Treatment-associated TP53 DNA-binding domain missense mutations in the pathogenesis of secondary gliosarcoma. Oncotarget. 9: 2603-2621. PMID 29416795 DOI: 10.18632/Oncotarget.23517  0.01
2018 Chiang D, Chen X, Jones SM, Wood RA, Sicherer SH, Burks AW, Leung DYM, Agashe C, Grishin A, Dawson P, Davidson WF, Newman L, Sebra R, Merad M, Sampson HA, et al. Single cell profiling of peanut-responsive T cells in peanut allergic subjects reveals heterogeneous effector Th2 subsets. The Journal of Allergy and Clinical Immunology. PMID 29408715 DOI: 10.1016/J.Jaci.2017.11.060  0.01
2018 Reiner J, Pisani L, Qiao W, Singh R, Yang Y, Shi L, Khan WA, Sebra R, Cohen N, Babu A, Edelmann L, Jabs EW, Scott SA. Cytogenomic identification and long-read single molecule real-time (SMRT) sequencing of a Bardet-Biedl Syndrome 9 (BBS9) deletion. Npj Genomic Medicine. 3: 3. PMID 29367880 DOI: 10.1038/S41525-017-0042-3  0.04
2018 Chacko K, Sullivan M, Beckford C, Altman D, Ciferri B, Pak T, Sebra R, Kasarskis A, Hamula C, van Bakel H. The genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia. Antimicrobial Agents and Chemotherapy. PMID 29339387 DOI: 10.1128/Aac.02007-17  0.04
2018 Miller JR, Koren S, Dilley KA, Puri V, Brown DM, Harkins DM, Thibaud-Nissen F, Rosen B, Chen XG, Tu Z, Sharakhov IV, Sharakhova MV, Sebra R, Stockwell TB, Bergman NH, et al. Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation. Gigascience. PMID 29329394 DOI: 10.1093/Gigascience/Gix135  0.01
2018 Chen X, Houten S, Allette K, Sebra RP, Stolovitzky G, Losic B. Characterization of drug-induced splicing complexity in prostate cancer cell line using long read technology. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 23: 8-19. PMID 29218865  0.01
2018 Irie H, Schmidt PH, Port ER, Kinoshita Y, Soto A, Pisapati K, Couri R, Kolodka O, Arib H, Sebra RP, Donovan MJ. Prospective serial sequencing of CTC/cfDNA and NK cell activity in patients undergoing multimodality treatment for triple negative breast cancer. Journal of Clinical Oncology. 36. DOI: 10.1200/Jco.2018.36.15_Suppl.E24108  0.01
2018 Losic B, Yong R, Akers N, Laface I, Tsankova N, Sebra R, Gnjatic S, Hormigo A. Abstract 1318: Mapping tumoral and immune heterogeneity in PD-1 responsive glioblastoma multiforme Cancer Research. 78: 1318-1318. DOI: 10.1158/1538-7445.Am2018-1318  0.01
2018 Li S, Gross SJ, Donovan M, Sebra R, Housman L, Chen R. Cancer Panel Sequencing to Guide Personalized Therapy of Breast and Gynecologic Cancers [32A] Obstetrics & Gynecology. 131. DOI: 10.1097/01.Aog.0000532895.33509.E3  0.04
2018 Beaumont K, Copperman AB, Dottino P, Martignetti J, Schadt E, Sebra R. Multiparameter Single Cell Characterization of Ovarian Intratumor Heterogeneity [29A] Obstetrics & Gynecology. 131. DOI: 10.1097/01.Aog.0000532892.87767.De  0.01
2018 Losic B, Yong R, Akers N, Laface I, Tsankova N, Sebra R, Gnjatic S, Hormigo A. Immu-60. Mapping Tumoral And Immune Heterogeneity In Pd-1 Responsive Glioblastoma Neuro-Oncology. 20. DOI: 10.1093/Neuonc/Noy148.563  0.04
2018 D’avola D, Villacorta C, Martins-Filho SN, Craig A, Labgaa I, Felden JV, Kimaada A, Bonaccorso A, Tabrizian P, Hartmann BM, Sebra R, Schwartz M, Villanueva A. Single-cell mRNA sequencing to characterize circulating tumor cells in hepatocellular carcinoma Journal of Hepatology. 68. DOI: 10.1016/S0168-8278(18)31131-0  0.01
2018 Sekhon L, Lee J, Wang Y, Briton-Jones C, Schadt E, Sebra RP, Copperman AB. Normal growth versus early developmental arrest of the human embryo: understanding molecular network perturbations Fertility and Sterility. 110. DOI: 10.1016/J.Fertnstert.2018.07.984  0.04
2018 Nazem TG, Beaumont K, Briton-Jones C, Lee J, Sebra RP, Copperman AB. Single-cell mitochondrial staining and ribonucleic acid (RNA) sequencing of human blastocysts Fertility and Sterility. 110. DOI: 10.1016/J.Fertnstert.2018.07.983  0.01
2018 Sekhon L, Ellis E, Nazem TG, Wang Y, Lee J, Briton-Jones C, Schadt E, Sebra RP, Copperman AB. Understanding the scope and significance of mosaicism in human preimplantation embryos Fertility and Sterility. 110. DOI: 10.1016/J.Fertnstert.2018.07.418  0.04
2018 Sekhon L, Allette K, Ellis E, Wang Y, Lee J, Briton-Jones C, Schadt E, Sebra RP, Copperman AB. The morula stage transcriptome is characterized by marked upregulation of genes that mediate key mitochondrial functions Fertility and Sterility. 110. DOI: 10.1016/J.Fertnstert.2018.07.247  0.01
2017 Ortega MA, Poirion O, Zhu X, Huang S, Wolfgruber TK, Sebra R, Garmire LX. Using single-cell multiple omics approaches to resolve tumor heterogeneity. Clinical and Translational Medicine. 6: 46. PMID 29285690 DOI: 10.1186/S40169-017-0177-Y  0.01
2017 Yang J, Hagen J, Guntur KV, Allette K, Schuyler S, Ranjan J, Petralia F, Gesta S, Sebra R, Mahajan M, Zhang B, Zhu J, Houten S, Kasarskis A, Vishnudas VK, et al. A next generation sequencing based approach to identify extracellular vesicle mediated mRNA transfers between cells. Bmc Genomics. 18: 987. PMID 29273013 DOI: 10.1186/S12864-017-4359-1  0.04
2017 Beaulaurier J, Zhu S, Deikus G, Mogno I, Zhang XS, Davis-Richardson A, Canepa R, Triplett EW, Faith JJ, Sebra R, Schadt EE, Fang G. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation. Nature Biotechnology. PMID 29227468 DOI: 10.1038/Nbt.4037  0.04
2017 Sebra R. DNA sequencing at ultra-high fidelity. Nature Biotechnology. 35: 1143-1144. PMID 29106409 DOI: 10.1038/Nbt.4001  0.08
2017 Young GR, Terry SN, Manganaro L, Cuesta-Dominguez A, Deikus G, Bernal-Rubio D, Campisi L, Fernandez-Sesma A, Sebra R, Simon V, Mulder LCF. HIV-1 infection of primary CD4(+) T cells regulates the expression of specific HERV-K (HML-2) elements. Journal of Virology. PMID 29046457 DOI: 10.1128/Jvi.01507-17  0.01
2017 Komor MA, Pham T, Hiemstra AC, Piersma SR, Bolijn AS, Schelfhorst T, Delis-van Diemen PM, Tijssen M, Sebra RP, Ashby M, Meijer GA, Jimenez CR, Fijneman RJA. Identification of differentially expressed splice variants by the proteogenomic pipeline Splicify. Molecular & Cellular Proteomics : McP. PMID 28747380 DOI: 10.1074/Mcp.Tir117.000056  0.01
2017 Nelson K, Hemarajata P, Sun D, Rubio-Aparicio D, Tsivkovski R, Yang S, Sebra R, Kasarskis A, Nguyen H, Hanson BM, Leopold S, Weinstock G, Lomovskaya O, Humphries RM. Resistance to ceftazidime-avibactam is due to transposition of KPC in a porin-deficient strain of Klebsiella pneumoniae with increased efflux activity. Antimicrobial Agents and Chemotherapy. PMID 28739787 DOI: 10.1128/Aac.00989-17  0.01
2017 Stoesser N, Sheppard AE, Peirano G, Anson LW, Pankhurst L, Sebra R, Phan HTT, Kasarskis A, Mathers AJ, Peto TEA, Bradford P, Motyl MR, Walker AS, Crook DW, Pitout JD. Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli. Scientific Reports. 7: 5917. PMID 28725045 DOI: 10.1038/S41598-017-06256-2  0.01
2017 Xu F, Gonzalez-Escalona N, Drees KP, Sebra RP, Cooper VS, Jones SH, Whistler CA. Parallel evolution of two clades of a major Atlantic endemic Vibrio parahaemolyticus pathogen lineage by independent acquisition of related pathogenicity islands. Applied and Environmental Microbiology. PMID 28687650 DOI: 10.1128/Aem.01168-17  0.01
2017 Sahraeian SME, Mohiyuddin M, Sebra R, Tilgner H, Afshar PT, Au KF, Bani Asadi N, Gerstein MB, Wong WH, Snyder MP, Schadt E, Lam HYK. Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis. Nature Communications. 8: 59. PMID 28680106 DOI: 10.1038/S41467-017-00050-4  0.01
2017 Huang W, Wang G, Sebra R, Zhuge J, Yin C, Aguero-Rosenfeld ME, Schuetz AN, Dimitrova N, Fallon JT. Emergence and Evolution of Multidrug-Resistant Klebsiella pneumoniae with both blaKPC and blaCTX-M Integrated in Chromosome. Antimicrobial Agents and Chemotherapy. PMID 28438939 DOI: 10.1128/Aac.00076-17  0.01
2017 Tome-Garcia J, Tejero R, Nudelman G, Yong RL, Sebra R, Wang H, Fowkes M, Magid M, Walsh M, Silva-Vargas V, Zaslavsky E, Friedel RH, Doetsch F, Tsankova NM. Prospective Isolation and Comparison of Human Germinal Matrix and Glioblastoma EGFR(+) Populations with Stem Cell Properties. Stem Cell Reports. PMID 28434940 DOI: 10.1016/J.Stemcr.2017.03.019  0.01
2017 Yang S, Hemarajata P, Hindler J, Li F, Adisetiyo H, Aldrovandi G, Sebra R, Kasarskis A, MacCannell D, Didelot X, Russell D, Rubin Z, Humphries R. Evolution and Transmission of Carbapenem-Resistant Klebsiella pneumoniae Expressing the blaOXA-232 Gene During an Institutional Outbreak Associated With Endoscopic Retrograde Cholangiopancreatography. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 64: 894-901. PMID 28362935 DOI: 10.1093/Cid/Ciw876  0.04
2017 Pandya C, Uzilov AV, Bellizzi J, Lau CY, Moe AS, Strahl M, Hamou W, Newman LC, Fink MY, Antipin Y, Yu W, Stevenson M, Cavaco BM, Teh BT, Thakker RV, ... ... Sebra R, et al. Genomic profiling reveals mutational landscape in parathyroid carcinomas. Jci Insight. 2: e92061. PMID 28352668 DOI: 10.1172/Jci.Insight.92061  0.04
2017 Bashir A, Attie O, Sullivan M, Sebra R, Singh KV, Altman D, Pak T, Dutta J, Chacko K, Webster E, Lewis M, Hamula C, Delli Carpini KW, Murray BE, Kasarskis A, et al. Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient. Plos One. 12: e0170449. PMID 28301471 DOI: 10.1371/Journal.Pone.0170449  0.04
2017 Irie H, Schmidt PH, Port ER, Kinoshita Y, Iglesia Jdl, Pisapati K, Couri R, Kolodka O, Arib H, Sebra RP, Donovan MJ. Serial CTC/cfDNA assessment for the identification of pathogenic mutations in patients with breast cancer. Journal of Clinical Oncology. 35. DOI: 10.1200/Jco.2017.35.15_Suppl.E23070  0.01
2017 Melnekoff D, Lagana A, Hamou W, Allette K, Beno I, Leshchenko V, Perumal D, Madduri D, Chari A, Cho HJ, Barlogie B, Jagannath S, Dudley J, Sebra R, Parekh S. Single-Cell RNA Sequencing Reveals Distinct Transcriptomic Profiles of Multiple Myeloma with Implications for Personalized Medicine Blood. 130: 62-62. DOI: 10.1182/Blood.V130.Suppl_1.62.62  0.01
2017 Gallitto M, Pain M, Wang H, Deikus G, Sebra R, Yong R. Gene-20. Use Of Decitabine To Alter Patterns Of Treatment-Induced Mutagenesis In Glioblastoma Neuro-Oncology. 19. DOI: 10.1093/Neuonc/Nox168.394  0.01
2017 Martignetti J, Nair N, Vanegas O, Rykunov D, Dashkoff M, Camacho S, Harkins T, Schumacher C, Irish J, Pereira E, Kendall S, Kalir T, Sebra R, Reva B, Dottino P. Mutation profiling of uterine lavage fluid detects early-stage endometrial cancers and discovers a prevalent landscape of driver mutations in women without cancer Gynecologic Oncology. 145: 126. DOI: 10.1016/J.Ygyno.2017.03.294  0.01
2016 Mathers AJ, Stoesser N, Chai W, Carroll J, Barry K, Cherunvanky A, Sebra R, Kasarskis A, Peto TE, Walker AS, Sifri CD, Crook DW, Sheppard AE. Chromosomal Integration of the Klebsiella pneumoniae carbapenemase gene (blaKPC) in Klebsiella Species: Elusive but not Rare. Antimicrobial Agents and Chemotherapy. PMID 28031204 DOI: 10.1128/Aac.01823-16  0.04
2016 Nair N, Camacho-Vanegas O, Rykunov D, Dashkoff M, Camacho SC, Schumacher CA, Irish JC, Harkins TT, Freeman E, Garcia I, Pereira E, Kendall S, Belfer R, Kalir T, Sebra R, et al. Genomic Analysis of Uterine Lavage Fluid Detects Early Endometrial Cancers and Reveals a Prevalent Landscape of Driver Mutations in Women without Histopathologic Evidence of Cancer: A Prospective Cross-Sectional Study. Plos Medicine. 13: e1002206. PMID 28027320 DOI: 10.1371/Journal.Pmed.1002206  0.01
2016 Xu F, Gonzalez-Escalona N, Haendiges J, Myers RA, Ferguson J, Stiles T, Hickey E, Moore M, Hickey JM, Schillaci C, Mank L, DeRosia-Banick K, Matluk N, Robbins A, Sebra RP, et al. Vibrio parahaemolyticus sequence type 631, an emerging foodborne pathogen in North America. Journal of Clinical Microbiology. PMID 27974540 DOI: 10.1128/Jcm.02162-16  0.01
2016 Olivares-Chauvet P, Mukamel Z, Lifshitz A, Schwartzman O, Elkayam NO, Lubling Y, Deikus G, Sebra RP, Tanay A. Capturing pairwise and multi-way chromosomal conformations using chromosomal walks. Nature. PMID 27919068 DOI: 10.1038/Nature20158  0.01
2016 Dillon MM, Sung W, Sebra R, Lynch M, Cooper VS. Genome-wide biases in the rate and molecular spectrum of spontaneous mutations in Vibrio cholerae and Vibrio fischeri. Molecular Biology and Evolution. PMID 27744412 DOI: 10.1093/Molbev/Msw224  0.01
2016 Martignetti JA, Chen Y, Camacho C, Silvers TR, Razak AR, Gabrail NY, Gerecitano JF, Kalir E, Pereira E, Evans BR, Ramus SJ, Huang F, Priedigkeit N, Rodriguez E, Donovan M, ... ... Sebra RP, et al. INHIBITION OF THE NUCLEAR EXPORT RECEPTOR XPO1 AS A THERAPEUTIC TARGET FOR PLATINUM RESISTANT OVARIAN CANCER. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 27649553 DOI: 10.1158/1078-0432.Ccr-16-1333  0.01
2016 Stoesser N, Sheppard AE, Peirano G, Sebra R, Lynch T, Anson L, Kasarskis A, Motyl MR, Crook DW, Pitout JD. Complete sequencing of plasmids containing blaOXA-163 and blaOXA-48 in Escherichia coli ST131. Antimicrobial Agents and Chemotherapy. PMID 27600043 DOI: 10.1128/Aac.01130-16  0.01
2016 Drees KP, Palmer JM, Sebra R, Lorch JM, Chen C, Wu CC, Bok JW, Keller NP, Blehert DS, Cuomo CA, Lindner DL, Foster JT. Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome. Genome Announcements. 4. PMID 27365344 DOI: 10.1128/Genomea.00445-16  0.01
2016 Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, ... ... Sebra R, et al. Extensive sequencing of seven human genomes to characterize benchmark reference materials. Scientific Data. 3: 160025. PMID 27271295 DOI: 10.1038/Sdata.2016.25  0.04
2016 Stoesser N, Sheppard AE, Peirano G, Sebra R, Lynch T, Anson L, Kasarskis A, Motyl MR, Crook DW, Pitout JD. First report of blaIMP-14 on a plasmid harboring multiple drug resistance genes in Escherichia coli ST131. Antimicrobial Agents and Chemotherapy. PMID 27246777 DOI: 10.1128/Aac.00840-16  0.01
2016 Uzilov AV, Ding W, Fink MY, Antipin Y, Brohl AS, Davis C, Lau CY, Pandya C, Shah H, Kasai Y, Powell J, Micchelli M, Castellanos R, Zhang Z, Linderman M, ... ... Sebra R, et al. Development and clinical application of an integrative genomic approach to personalized cancer therapy. Genome Medicine. 8: 62. PMID 27245685 DOI: 10.1186/S13073-016-0313-0  0.04
2016 Sheppard AE, Stoesser N, Wilson DJ, Sebra R, Kasarskis A, Anson LW, Giess A, Pankhurst LJ, Vaughan A, Grim CJ, Cox HL, Yeh AJ, Sifri CD, Walker AS, et al. Nested Russian Doll-like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC. Antimicrobial Agents and Chemotherapy. PMID 27067320 DOI: 10.1128/Aac.00464-16  0.01
2016 Sheppard AE, Stoesser N, Sebra R, Kasarskis A, Deikus G, Anson L, Walker AS, Peto TE, Crook DW, Mathers AJ. Complete Genome Sequence of KPC-Producing Klebsiella pneumoniae Strain CAV1193. Genome Announcements. 4. PMID 26823590 DOI: 10.1128/Genomea.01649-15  0.04
2016 Komor MA, Hiemstra AC, Pham TV, Piersma SR, Sebra RP, Han BW, Ashby M, Carvalho B, Meijer GA, Jimenez CR, Fijneman RJ. Abstract 848: Proteogenomic analysis of alternative splicing: the search for novel biomarkers for colorectal cancer Cancer Research. 76: 848-848. DOI: 10.1158/1538-7445.Am2016-848  0.01
2016 Sullivan M, Altman D, Webster E, Lewis M, Khan Z, Beckford C, Ciferri B, Deikus G, Rendo A, Samaroo F, Sebra R, Wallach F, Patel G, Hamula C, Bashir A, et al. Continuous Surveillance by Whole-Genome Sequencing to Identify and Manage Methicillin-Resistant Staphylococcus aureus Outbreaks Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw194.82  0.01
2016 Webster E, Chacko K, Sullivan M, Pak T, Ciferri B, Beckford C, Lewis M, Fang G, Altman D, Hamula C, Huprikar S, Sebra R, Schadt E, Kasarskis A, Van Bakel H, et al. Comparative Genomics and Assessment of Strain Diversity, Pathogenicity and Transmission of Clostridium difficile Isolates From a Hospital Setting Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw194.50  0.01
2016 Kim A, Zhu S, Beaulaurier J, Deikus G, Pak T, Lewis M, Altman D, Webster E, Bashir A, Hamula C, Huprikar S, Schadt E, Sebra R, Bakel HV, Kasarskis A, et al. Epigenomic Landscape of Clostridium difficile: Largely Neglected Complexity and Opportunity Learned from 45 Hospital Isolates Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw172.1757  0.01
2016 Altman D, Sullivan M, Chacko K, Balasubramanian D, Pak T, Sause W, Kumar K, Sebra R, Deikus G, Attie O, Rose H, Lewis M, Li Y, Bashir A, Kasarskis A, et al. Genetic Variation and Altered Virulence Associated With Loss of Agr Quorum-Sensing Functionality in Patients With Staphylococcus aureus Bacteremia Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw172.1751  0.01
2016 Chacko K, Pak T, Sebra R, Kasarskis A, Hamula C, Bakel HV. Longitudinal Whole-Genome Analysis Identifies Variants Associated with Vancomycin and Linezolid Resistance Changes in Enterococcus faecium in Response to Treatment Open Forum Infectious Diseases. 3. DOI: 10.1093/Ofid/Ofw172.1549  0.01
2016 Pain M, Gallitto M, Wang H, Sebra R, Zhu J, Yong R. GENT-52. MUTATIONAL HOTSPOT ANALYSIS OF SECONDARY GLIOSARCOMA REVEALS POTENTIAL TARGETS OF THERAPY-DRIVEN TUMOR EVOLUTION Neuro-Oncology. 18: vi85-vi85. DOI: 10.1093/Neuonc/Now212.356  0.01
2016 Martignetti J, Reva B, Elena P, Camacho-Vanegas O, Rykunov D, Kendall S, Shah H, Nair N, Strahl M, Hamou W, Kalir T, Schadt E, Sebra R, Dottino P. A pre-operative, diagnostic gene panel for guiding primary treatment choices in endometrial cancer: Advancing beyond the decades-old technology of dilation and curettage (D&C) European Journal of Cancer. 61. DOI: 10.1016/S0959-8049(16)61103-6  0.01
2016 Pereira E, Vanegas O, Anand S, Sebra R, Vanegas S, Garnar-Wortzel L, Nair N, Moshier E, Wooten M, Uzilov A, Chen R, Hayes M, Zakashansky K, Beddoe A, Schadt E, et al. Personalized circulating tumor DNA biomarkers dynamically predict treatment response and survival in gynecologic cancers Gynecologic Oncology. 141: 3-4. DOI: 10.1016/J.Ygyno.2016.04.036  0.01
2015 Booher NJ, Carpenter SC, Sebra RP, Wang L, Salzberg SL, Leach JE, Bogdanove AJ. Single molecule real-time sequencing of Xanthomonas oryzae genomes reveals a dynamic structure and complex TAL (transcription activator-like) effector gene relationships. Microbial Genomics. 1. PMID 27148456 DOI: 10.1099/mgen.0.000032  0.01
2015 Rubinsteyn A, Martignetti J, Pereira E, O'Donnell T, Ahuja A, Garnar-Wortzel L, Sebra R, Dottino P, Hammerbacher J, Schadt E. Heterogeneity of mutated tumor antigens in a single high grade ovarian serous carcinoma F1000research. 6. DOI: 10.7490/F1000Research.1098264.1  0.04
2015 Pereira EB, Camacho-Vanegas O, Anand S, Singh C, Uzilov A, Sebra R, Chappell D, Dottino P, Martignetti JA. Abstract 2398: Precision molecular biomarkers for the surveillance of gynecologic malignancies: Rapid and efficient pipeline for the design and highly sensitive detection of circulating tumor DNA Cancer Research. 75: 2398-2398. DOI: 10.1158/1538-7445.Am2015-2398  0.01
2015 Khedimi R, Patel G, Kohli-Seth R, Hamula C, Pak T, Altman D, Lewis M, Somers E, Sebra R, Bakel HV, Bashir A, Kasarskis A, Wallach F, Huprikar S. Non-clonal Outbreak of Burkholderia Cepacia Complex in the Intensive Care Unit Confirmed by Genomic Analysis and Eradicated After Terminal Cleaning of the Unit Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv133.223  0.04
2015 Miller W, Diaz L, Rios R, Reyes J, Smith D, Narechania A, Sebra R, Deikus G, Panesso D, Planet P, Arias C. LiaR-Independent Daptomycin (DAP) Resistance Arises De novo in Enterococcus faecalis but Not in Enterococcus faecium Open Forum Infectious Diseases. 2. DOI: 10.1093/Ofid/Ofv131.159  0.01
2014 Parker D, Narechania A, Sebra R, Deikus G, Larussa S, Ryan C, Smith H, Prince A, Mathema B, Ratner AJ, Kreiswirth B, Planet PJ. Genome Sequence of Bacterial Interference Strain Staphylococcus aureus 502A. Genome Announcements. 2. PMID 24723721 DOI: 10.1128/Genomea.00284-14  0.04
2013 Smith CC, Lin K, Lasater E, Stewart W, Damon LE, Kasarskis A, Bashir A, Pendleton M, Sebra R, Perl AE, Le MH, Zhang C, West B, Shah NP. Preclinical and Clinical Resistance Mechanisms To The Investigational Selective FLT3 Inhibitor PLX3397 In FLT3-ITD+ Acute Myeloid Leukemia (AML) Blood. 122: 3938-3938. DOI: 10.1182/Blood.V122.21.3938.3938  0.04
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