| Year |
Citation |
Score |
| 2024 |
Clotet-Freixas S, Zaslaver O, Kotlyar M, Pastrello C, Quaile AT, McEvoy CM, Saha AD, Farkona S, Boshart A, Zorcic K, Neupane S, Manion K, Allen M, Chan M, Chen X, ... ... Jurisica I, et al. Sex differences in kidney metabolism may reflect sex-dependent outcomes in human diabetic kidney disease. Science Translational Medicine. 16: eabm2090. PMID 38446901 DOI: 10.1126/scitranslmed.abm2090 |
0.489 |
|
| 2024 |
Koussiouris J, Looby N, Kotlyar M, Kulasingam V, Jurisica I, Chandran V. Classifying patients with psoriatic arthritis according to their disease activity status using serum metabolites and machine learning. Metabolomics : Official Journal of the Metabolomic Society. 20: 17. PMID 38267619 DOI: 10.1007/s11306-023-02079-7 |
0.502 |
|
| 2023 |
Khan S, Chakraborty M, Wu F, Chen N, Wang T, Chan YT, Sayad A, Vásquez JDS, Kotlyar M, Nguyen K, Huang Y, Alibhai FJ, Woo M, Li RK, Husain M, ... Jurisica I, et al. B Cells Promote T Cell Immunosenescence and Mammalian Aging Parameters. Biorxiv : the Preprint Server For Biology. PMID 38529494 DOI: 10.1101/2023.09.12.556363 |
0.505 |
|
| 2023 |
Pastrello C, Kotlyar M, Abovsky M, Lu R, Jurisica I. PathDIP 5: improving coverage and making enrichment analysis more biologically meaningful. Nucleic Acids Research. PMID 37994706 DOI: 10.1093/nar/gkad1027 |
0.56 |
|
| 2023 |
Choksi H, Li S, Looby N, Kotlyar M, Jurisica I, Kulasingam V, Chandran V. Identifying Serum Metabolomic Markers Associated with Skin Disease Activity in Patients with Psoriatic Arthritis. International Journal of Molecular Sciences. 24. PMID 37894979 DOI: 10.3390/ijms242015299 |
0.514 |
|
| 2023 |
Wong SWH, Pastrello C, Kotlyar M, Faloutsos C, Jurisica I. USNAP: Fast unique dense region detection and its application to lung cancer. Bioinformatics (Oxford, England). PMID 37527019 DOI: 10.1093/bioinformatics/btad477 |
0.512 |
|
| 2023 |
Maier A, Hartung M, Abovsky M, Adamowicz K, Bader GD, Baier S, Blumenthal DB, Chen J, Elkjaer ML, Garcia-Hernandez C, Hoffmann M, Jurisica I, Kotlyar M, Lazareva O, Levi H, et al. Drugst.One -- A plug-and-play solution for online systems medicine and network-based drug repurposing. Arxiv. PMID 37332567 |
0.555 |
|
| 2022 |
Pastrello C, Abovsky M, Lu R, Ahmed Z, Kotlyar M, Veillette C, Jurisica I. Osteoarthritis Data Integration Portal (OsteoDIP): A web-based gene and non-coding RNA expression database. Osteoarthritis and Cartilage Open. 4: 100237. PMID 36474475 DOI: 10.1016/j.ocarto.2022.100237 |
0.536 |
|
| 2022 |
Hauschild AC, Pastrello C, Ekaputeri GKA, Bethune-Waddell D, Abovsky M, Ahmed Z, Kotlyar M, Lu R, Jurisica I. MirDIP 5.2: tissue context annotation and novel microRNA curation. Nucleic Acids Research. PMID 36453996 DOI: 10.1093/nar/gkac1070 |
0.592 |
|
| 2022 |
Pathmanathan S, Yao Z, Coelho P, Valla R, Drecun L, Benz C, Snider J, Saraon P, Grozavu I, Kotlyar M, Jurisica I, Park M, Stagljar I. B cell linker protein (BLNK) is a regulator of Met receptor signaling and trafficking in non-small cell lung cancer. Iscience. 25: 105419. PMID 36388990 DOI: 10.1016/j.isci.2022.105419 |
0.589 |
|
| 2022 |
Lim SH, Snider J, Birimberg-Schwartz L, Ip W, Serralha JC, Botelho HM, Lopes-Pacheco M, Pinto MC, Moutaoufik MT, Zilocchi M, Laselva O, Esmaeili M, Kotlyar M, Lyakisheva A, Tang P, ... ... Jurisica I, et al. CFTR interactome mapping using the mammalian membrane two-hybrid high-throughput screening system. Molecular Systems Biology. 18: e10629. PMID 35156780 DOI: 10.15252/msb.202110629 |
0.546 |
|
| 2022 |
Kotlyar M, Wong SWH, Pastrello C, Jurisica I. Improving Analysis and Annotation of Microarray Data with Protein Interactions. Methods in Molecular Biology (Clifton, N.J.). 2401: 51-68. PMID 34902122 DOI: 10.1007/978-1-0716-1839-4_5 |
0.591 |
|
| 2022 |
Kotlyar M, Pastrello C, Ahmed Z, Chee J, Varyova Z, Jurisica I. IID 2021: towards context-specific protein interaction analyses by increased coverage, enhanced annotation and enrichment analysis. Nucleic Acids Research. 50: D640-D647. PMID 34755877 DOI: 10.1093/nar/gkab1034 |
0.59 |
|
| 2021 |
Bhat M, Pasini E, Pastrello C, Angeli M, Baciu C, Abovsky M, Coffee A, Adeyi O, Kotlyar M, Jurisica I. Estrogen Receptor 1 Inhibition of Wnt/β-Catenin Signaling Contributes to Sex Differences in Hepatocarcinogenesis. Frontiers in Oncology. 11: 777834. PMID 34881186 DOI: 10.3389/fonc.2021.777834 |
0.498 |
|
| 2021 |
Aboualizadeh F, Yao Z, Guan J, Drecun L, Pathmanathan S, Snider J, Umapathy G, Kotlyar M, Jurisica I, Palmer R, Stagljar I. Mapping the Phospho-dependent ALK Interactome to Identify Novel Components in ALK Signaling. Journal of Molecular Biology. 433: 167283. PMID 34606829 DOI: 10.1016/j.jmb.2021.167283 |
0.569 |
|
| 2021 |
Clotet-Freixas S, Kotlyar M, McEvoy CM, Pastrello C, Rodríguez-Ramírez S, Farkona S, Cardinal H, Dieudé M, Hébert MJ, Li Y, Famure O, Chen P, Kim SJ, Chan E, Jurisica I, et al. Increased Autoantibodies Against Ro/SS-A, CENP-B, and La/SS-B in Patients With Kidney Allograft Antibody-mediated Rejection. Transplantation Direct. 7: e768. PMID 34557585 DOI: 10.1097/TXD.0000000000001215 |
0.483 |
|
| 2021 |
Li L, Guturi KKN, Gautreau B, Patel PS, Saad A, Morii M, Mateo F, Palomero L, Barbour H, Gomez A, Ng D, Kotlyar M, Pastrello C, Jackson HW, Khokha R, ... Jurisica I, et al. Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis. The Journal of Clinical Investigation. 131. PMID 34196309 DOI: 10.1172/JCI152424 |
0.512 |
|
| 2021 |
Berra G, Farkona S, Mohammed-Ali Z, Kotlyar M, Levy L, Clotet-Freixas S, Ly P, Renaud-Picard B, Zehong G, Daigneault T, Duong A, Batruch I, Jurisica I, Konvalinka A, Martinu T. Association between renin-angiotensin system and chronic lung allograft dysfunction. The European Respiratory Journal. PMID 33863738 DOI: 10.1183/13993003.02975-2020 |
0.522 |
|
| 2021 |
Bhat M, Pasini E, Pastrello C, Rahmati S, Angeli M, Kotlyar M, Ghanekar A, Jurisica I. Integrative analysis of layers of data in hepatocellular carcinoma reveals pathway dependencies. World Journal of Hepatology. 13: 94-108. PMID 33584989 DOI: 10.4254/wjh.v13.i1.94 |
0.498 |
|
| 2021 |
Chakraborty M, Chu K, Shrestha A, Revelo XS, Zhang X, Gold MJ, Khan S, Lee M, Huang C, Akbari M, Barrow F, Chan YT, Lei H, Kotoulas NK, Jovel J, ... ... Jurisica I, et al. Mechanical Stiffness Controls Dendritic Cell Metabolism and Function. Cell Reports. 34: 108609. PMID 33440149 DOI: 10.1016/j.celrep.2020.108609 |
0.505 |
|
| 2020 |
Nakamura A, Rampersaud YR, Sundararajan K, Nakamura S, Wu B, Matip E, Haroon N, Krawetz RJ, Rossomacha E, Gandhi R, Kotlyar M, Rockel JS, Jurisica I, Kapoor M. Zinc finger protein-440 promotes cartilage degenerative mechanisms in human facet and knee osteoarthritis chondrocytes. Osteoarthritis and Cartilage. PMID 33347923 DOI: 10.1016/j.joca.2020.12.004 |
0.503 |
|
| 2020 |
Porras P, Barrera E, Bridge A, Del-Toro N, Cesareni G, Duesbury M, Hermjakob H, Iannuccelli M, Jurisica I, Kotlyar M, Licata L, Lovering RC, Lynn DJ, Meldal B, Nanduri B, et al. Towards a unified open access dataset of molecular interactions. Nature Communications. 11: 6144. PMID 33262342 DOI: 10.1038/s41467-020-19942-z |
0.559 |
|
| 2020 |
Clotet-Freixas S, McEvoy CM, Batruch I, Pastrello C, Kotlyar M, Van JAD, Arambewela M, Boshart A, Farkona S, Niu Y, Li Y, Famure O, Bozovic A, Kulasingam V, Chen P, ... ... Jurisica I, et al. Extracellular Matrix Injury of Kidney Allografts in Antibody-Mediated Rejection: A Proteomics Study. Journal of the American Society of Nephrology : Jasn. PMID 32900843 DOI: 10.1681/Asn.2020030286 |
0.532 |
|
| 2020 |
Perfetto L, Pastrello C, Del-Toro N, Duesbury M, Iannuccelli M, Kotlyar M, Licata L, Meldal B, Panneerselvam K, Panni S, Rahimzadeh N, Ricard-Blum S, Salwinski L, Shrivastava A, Cesareni G, ... ... Jurisica I, et al. The IMEx Coronavirus interactome: an evolving map of Coronaviridae-Host molecular interactions. Biorxiv : the Preprint Server For Biology. PMID 32587962 DOI: 10.1101/2020.06.16.153817 |
0.546 |
|
| 2020 |
Yao Z, Aboualizadeh F, Kroll J, Akula I, Snider J, Lyakisheva A, Tang P, Kotlyar M, Jurisica I, Boxem M, Stagljar I. Split Intein-Mediated Protein Ligation for detecting protein-protein interactions and their inhibition. Nature Communications. 11: 2440. PMID 32415080 DOI: 10.1038/S41467-020-16299-1 |
0.592 |
|
| 2020 |
Sinsky J, Majerova P, Kovac A, Kotlyar M, Jurisica I, Hanes J. Physiological Tau Interactome in Brain and Its Link to Tauopathies. Journal of Proteome Research. 19: 2429-2442. PMID 32357304 DOI: 10.1021/Acs.Jproteome.0C00137 |
0.586 |
|
| 2020 |
Kennedy SA, Jarboui MA, Srihari S, Raso C, Bryan K, Dernayka L, Charitou T, Bernal-Llinares M, Herrera-Montavez C, Krstic A, Matallanas D, Kotlyar M, Jurisica I, Curak J, Wong V, et al. Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS. Nature Communications. 11: 499. PMID 31980649 DOI: 10.1038/S41467-019-14224-9 |
0.617 |
|
| 2020 |
Pastrello C, Kotlyar M, Jurisica I. Informed Use of Protein-Protein Interaction Data: A Focus on the Integrated Interactions Database (IID). Methods in Molecular Biology (Clifton, N.J.). 2074: 125-134. PMID 31583635 DOI: 10.1007/978-1-4939-9873-9_10 |
0.607 |
|
| 2019 |
Enfield KSS, Marshall EA, Anderson C, Ng KW, Rahmati S, Xu Z, Fuller M, Milne K, Lu D, Shi R, Rowbotham DA, Becker-Santos DD, Johnson FD, English JC, MacAulay CE, ... ... Jurisica I, et al. Epithelial tumor suppressor ELF3 is a lineage-specific amplified oncogene in lung adenocarcinoma. Nature Communications. 10: 5438. PMID 31780666 DOI: 10.1038/S41467-019-13295-Y |
0.332 |
|
| 2019 |
Rahmati S, Abovsky M, Pastrello C, Kotlyar M, Lu R, Cumbaa CA, Rahman P, Chandran V, Jurisica I. pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species. Nucleic Acids Research. PMID 31733064 DOI: 10.1093/Nar/Gkz989 |
0.609 |
|
| 2019 |
Monette A, Morou A, Al-Banna NA, Rousseau L, Lattouf JB, Rahmati S, Tokar T, Routy JP, Cailhier JF, Kaufmann DE, Jurisica I, Lapointe R. Failed immune responses across multiple pathologies share pan-tumor and circulating lymphocytic targets. The Journal of Clinical Investigation. 130. PMID 30912767 DOI: 10.1172/Jci125301 |
0.327 |
|
| 2019 |
Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, et al. Publisher Correction: Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature Communications. 10: 1098. PMID 30833551 DOI: 10.1038/S41467-019-08814-W |
0.549 |
|
| 2019 |
Del-Toro N, Duesbury M, Koch M, Perfetto L, Shrivastava A, Ochoa D, Wagih O, Piñero J, Kotlyar M, Pastrello C, Beltrao P, Furlong LI, Jurisica I, Hermjakob H, Orchard S, et al. Capturing variation impact on molecular interactions in the IMEx Consortium mutations data set. Nature Communications. 10: 10. PMID 30602777 DOI: 10.1038/S41467-018-07709-6 |
0.601 |
|
| 2018 |
Kotlyar M, Pastrello C, Malik Z, Jurisica I. IID 2018 update: context-specific physical protein-protein interactions in human, model organisms and domesticated species. Nucleic Acids Research. PMID 30407591 DOI: 10.1093/Nar/Gky1037 |
0.613 |
|
| 2018 |
Li L, Guturi KKN, Gautreau B, Patel PS, Saad A, Morii M, Mateo F, Palomero L, Barbour H, Gomez A, Ng D, Kotlyar M, Pastrello C, Jackson HW, Khokha R, ... Jurisica I, et al. Ubiquitin ligase RNF8 suppresses Notch signaling to regulate mammary development and tumorigenesis. The Journal of Clinical Investigation. PMID 30222135 DOI: 10.1172/Jci120401 |
0.588 |
|
| 2018 |
Singh M, Venugopal C, Tokar T, McFarlane N, Subapanditha MK, Qazi M, Bakhshinyan D, Vora P, Murty N, Jurisica I, Singh SK. Therapeutic targeting of the pre-metastatic stage in human brain metastasis. Cancer Research. PMID 29986997 DOI: 10.1158/0008-5472.Can-18-1022 |
0.323 |
|
| 2018 |
Jean-Quartier C, Jeanquartier F, Jurisica I, Holzinger A. In silico cancer research towards 3R. Bmc Cancer. 18: 408. PMID 29649981 DOI: 10.1186/S12885-018-4302-0 |
0.332 |
|
| 2018 |
Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, Ceol A, Cesareni G, Combe C, De Las Rivas J, Del-Toro N, Heimbach J, Hermjakob H, Jurisica I, Koch M, Licata L, et al. Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. Bmc Bioinformatics. 19: 134. PMID 29642841 DOI: 10.1186/S12859-018-2118-1 |
0.318 |
|
| 2018 |
Tokar T, Pastrello C, Ramnarine VR, Zhu CQ, Craddock KJ, Pikor LA, Vucic EA, Vary S, Shepherd FA, Tsao MS, Lam WL, Jurisica I. Differentially expressed microRNAs in lung adenocarcinoma invert effects of copy number aberrations of prognostic genes. Oncotarget. 9: 9137-9155. PMID 29507679 DOI: 10.18632/Oncotarget.24070 |
0.356 |
|
| 2018 |
Felix TF, Bertoni N, Tokar T, Rodrigues MAM, Oliveira RA, Hasimoto CN, Llanos JC, Jurisica I, Drigo SA, Carvalho RF, Reis PP. Abstract B01: MicroRNA expression in tumors and liquid biopsy samples from patients with pancreatic ductal adenocarcinoma: Identification of clinically relevant pathways Clinical Cancer Research. 24: 66-66. DOI: 10.1158/1557-3265.Tcm17-B01 |
0.333 |
|
| 2018 |
Enfield KSS, Marshall EA, Anderson C, Ng KW, Rahmati S, Xu Z, MacAulay CE, Lam S, Lockwood WW, Chari R, Karsan A, Jurisica I, Lam WL. Abstract A26: Identification of a novel therapeutic target in lung adenocarcinoma Clinical Cancer Research. 24. DOI: 10.1158/1557-3265.Aacriaslc18-A26 |
0.345 |
|
| 2017 |
Kotlyar M, Rossos AEM, Jurisica I. Prediction of Protein-Protein Interactions. Current Protocols in Bioinformatics. 60: 8.2.1-8.2.14. PMID 29220074 DOI: 10.1002/Cpbi.38 |
0.59 |
|
| 2017 |
Singh M, Venugopal C, Tokar T, Brown KR, McFarlane N, Bakhshinyan D, Vijayakumar T, Manoranjan B, Mahendram S, Vora P, Qazi M, Dhillon M, Tong A, Durrer K, Murty N, ... ... Jurisica I, et al. RNAi screen identifies essential regulators of human brain metastasis-initiating cells. Acta Neuropathologica. PMID 28766011 DOI: 10.1007/S00401-017-1757-Z |
0.344 |
|
| 2017 |
Wong SWH, Pastrello C, Kotlyar M, Faloutsos C, Jurisica I. Modeling tumor progression via the comparison of stage-specific graphs. Methods (San Diego, Calif.). PMID 28684340 DOI: 10.1016/J.Ymeth.2017.06.033 |
0.608 |
|
| 2017 |
Pastrello C, Tsay M, McQuaid R, Abovsky M, Pasini E, Shirdel E, Angeli M, Tokar T, Jamnik J, Kotlyar M, Jurisicova A, Kotsopoulos J, El-Sohemy A, Jurisica I. Retraction: Circulating plant miRNAs can regulate human gene expression in vitro. Scientific Reports. 7: 46826. PMID 28530244 DOI: 10.1038/Srep46826 |
0.757 |
|
| 2017 |
Sokolina K, Kittanakom S, Snider J, Kotlyar M, Maurice P, Gandía J, Benleulmi-Chaachoua A, Tadagaki K, Oishi A, Wong V, Malty RH, Deineko V, Aoki H, Amin S, Yao Z, ... ... Jurisica I, et al. Systematic protein-protein interaction mapping for clinically relevant human GPCRs. Molecular Systems Biology. 13: 918. PMID 28298427 DOI: 10.15252/Msb.20167430 |
0.605 |
|
| 2017 |
Posfai E, Petropoulos S, de Barros FR, Schell JP, Jurisica I, Sandberg R, Lanner F, Rossant J. Position- and Hippo signaling-dependent plasticityduring lineage segregation in the early mouse embryo. Elife. 6. PMID 28226240 DOI: 10.7554/Elife.22906 |
0.3 |
|
| 2016 |
Yao Z, Darowski K, St-Denis N, Wong V, Offensperger F, Villedieu A, Amin S, Malty R, Aoki H, Guo H, Xu Y, Iorio C, Kotlyar M, Emili A, Jurisica I, et al. A Global Analysis of the Receptor Tyrosine Kinase-Protein Phosphatase Interactome. Molecular Cell. PMID 28065597 DOI: 10.1016/J.Molcel.2016.12.004 |
0.592 |
|
| 2016 |
Petschnigg J, Kotlyar M, Blair L, Jurisica I, Stagljar I, Ketteler R. Systematic Identification of Oncogenic EGFR Interaction Partners. Journal of Molecular Biology. PMID 27956147 DOI: 10.1016/J.Jmb.2016.12.006 |
0.61 |
|
| 2016 |
Rahmati S, Abovsky M, Pastrello C, Jurisica I. pathDIP: an annotated resource for known and predicted human gene-pathway associations and pathway enrichment analysis. Nucleic Acids Research. PMID 27899558 DOI: 10.1093/Nar/Gkw1082 |
0.355 |
|
| 2016 |
Wang D, Pham NA, Tong J, Sakashita S, Allo G, Kim L, Yanagawa N, Raghavan V, Wei Y, To C, Trinh QM, Starmans MH, Chan-Seng-Yue MA, Chadwick D, Li L, ... ... Jurisica I, et al. Molecular heterogeneity of non-small cell lung carcinoma patient-derived xenografts closely reflect their primary tumors. International Journal of Cancer. PMID 27750381 DOI: 10.1002/Ijc.30472 |
0.313 |
|
| 2016 |
Pastrello C, Tsay M, McQuaid R, Abovsky M, Pasini E, Shirdel E, Angeli M, Tokar T, Jamnik J, Kotlyar M, Jurisicova A, Kotsopoulos J, El-Sohemy A, Jurisica I. Circulating plant miRNAs can regulate human gene expression in vitro. Scientific Reports. 6: 32773. PMID 27604570 DOI: 10.1038/Srep32773 |
0.777 |
|
| 2016 |
Chehade R, Pettapiece-Phillips R, Salmena L, Kotlyar M, Jurisica I, Narod SA, Akbari MR, Kotsopoulos J. Reduced BRCA1 transcript levels in freshly isolated blood leukocytes from BRCA1 mutation carriers is mutation specific. Breast Cancer Research : Bcr. 18: 87. PMID 27534398 DOI: 10.1186/S13058-016-0739-8 |
0.565 |
|
| 2016 |
Becker-Santos DD, Thu KL, English JC, Pikor LA, Martinez VD, Zhang M, Vucic EA, Luk MT, Carraro A, Korbelik J, Piga D, Lhomme NM, Tsay MJ, Yee J, MacAulay CE, ... ... Jurisica I, et al. Developmental transcription factor NFIB is a putative target of oncofetal miRNAs and is associated with tumour aggressiveness in lung adenocarcinoma. The Journal of Pathology. PMID 27357447 DOI: 10.1002/Path.4765 |
0.315 |
|
| 2016 |
Stojanova A, Tu WB, Ponzielli R, Kotlyar M, Chan PK, Boutros PC, Khosravi F, Jurisica I, Raught B, Penn LZ. MYC interaction with the tumour suppressive SWI/SNF complex member INI1 regulates transcription and cellular transformation. Cell Cycle (Georgetown, Tex.). 0. PMID 27267444 DOI: 10.1080/15384101.2016.1146836 |
0.616 |
|
| 2016 |
Pettapiece-Phillips R, Kotlyar M, Chehade R, Salmena L, Narod SA, Akbari M, Jurisica I, Kotsopoulos J. Uninterrupted Sedentary Behavior Downregulates BRCA1 Gene Expression. Cancer Prevention Research (Philadelphia, Pa.). 9: 83-8. PMID 26526989 DOI: 10.1158/1940-6207.Capr-15-0291 |
0.571 |
|
| 2016 |
Kotlyar M, Pastrello C, Sheahan N, Jurisica I. Integrated interactions database: tissue-specific view of the human and model organism interactomes. Nucleic Acids Research. 44: D536-41. PMID 26516188 DOI: 10.1093/Nar/Gkv1115 |
0.606 |
|
| 2015 |
Snider J, Kotlyar M, Saraon P, Yao Z, Jurisica I, Stagljar I. Fundamentals of protein interaction network mapping. Molecular Systems Biology. 11: 848. PMID 26681426 DOI: 10.15252/Msb.20156351 |
0.605 |
|
| 2015 |
Singh M, Garg N, Venugopal C, Hallett R, Tokar T, McFarlane N, Mahendram S, Bakhshinyan D, Manoranjan B, Vora P, Qazi M, Arpin CC, Page B, Haftchenary S, Rosa DA, ... ... Jurisica I, et al. STAT3 pathway regulates lung-derived brain metastasis initiating cell capacity through miR-21 activation. Oncotarget. PMID 26314961 DOI: 10.18632/Oncotarget.4742 |
0.314 |
|
| 2015 |
Agostini M, Zangrando A, Pastrello C, D'Angelo E, Romano G, Giovannoni R, Giordan M, Maretto I, Bedin C, Zanon C, Digito M, Esposito G, Mescoli C, Lavitrano M, Rizzolio F, ... Jurisica I, et al. A functional biological network centered on XRCC3: a new possible marker of chemoradiotherapy resistance in rectal cancer patients. Cancer Biology & Therapy. 1-12. PMID 26023803 DOI: 10.1080/15384047.2015.1046652 |
0.379 |
|
| 2015 |
Fortney K, Griesman J, Kotlyar M, Pastrello C, Angeli M, Sound-Tsao M, Jurisica I. Prioritizing therapeutics for lung cancer: an integrative meta-analysis of cancer gene signatures and chemogenomic data. Plos Computational Biology. 11: e1004068. PMID 25786242 DOI: 10.1371/Journal.Pcbi.1004068 |
0.734 |
|
| 2015 |
Dingar D, Kalkat M, Chan PK, Srikumar T, Bailey SD, Tu WB, Coyaud E, Ponzielli R, Kolyar M, Jurisica I, Huang A, Lupien M, Penn LZ, Raught B. BioID identifies novel c-MYC interacting partners in cultured cells and xenograft tumors. Journal of Proteomics. 118: 95-111. PMID 25452129 DOI: 10.1016/J.Jprot.2014.09.029 |
0.35 |
|
| 2015 |
Kotlyar M, Pastrello C, Pivetta F, Lo Sardo A, Cumbaa C, Li H, Naranian T, Niu Y, Ding Z, Vafaee F, Broackes-Carter F, Petschnigg J, Mills GB, Jurisicova A, Stagljar I, ... ... Jurisica I, et al. In silico prediction of physical protein interactions and characterization of interactome orphans. Nature Methods. 12: 79-84. PMID 25402006 DOI: 10.1038/Nmeth.3178 |
0.61 |
|
| 2015 |
Wong SW, Cercone N, Jurisica I. Comparative network analysis via differential graphlet communities. Proteomics. 15: 608-17. PMID 25283527 DOI: 10.1002/Pmic.201400233 |
0.336 |
|
| 2015 |
Tu WB, Helander S, Pilstål R, Hickman KA, Lourenco C, Jurisica I, Raught B, Wallner B, Sunnerhagen M, Penn LZ. Myc and its interactors take shape. Biochimica Et Biophysica Acta. 1849: 469-483. PMID 24933113 DOI: 10.1016/J.Bbagrm.2014.06.002 |
0.356 |
|
| 2015 |
Snider J, Kotlyar M, Saraon P, Yao Z, Jurisica I, Stagljar I. Fundamentals of protein interaction network mapping Molecular Systems Biology. 11. DOI: 10.15252/msb.20156351 |
0.535 |
|
| 2015 |
Dingar D, Kalkat M, Chan P, Bailey SD, Srikumar T, Tu WB, Coyaud E, Ponzielli R, Kolyar M, Jurisica I, Huang A, Lupien M, Raught B, Penn LZ. Abstract B04: In vivo BioID identifies novel Myc interacting partners Molecular Cancer Research. 13. DOI: 10.1158/1557-3125.Myc15-B04 |
0.378 |
|
| 2015 |
Tu WB, Stojanova A, Ponzielli R, Kotlyar M, Chan P, Boutros PC, Khosravi F, Jurisica I, Raught B, Penn LZ. Abstract A36: Interaction of the MYC oncoprotein with the tumor suppressive SWI/SNF complex member INI1 Molecular Cancer Research. 13. DOI: 10.1158/1557-3125.Myc15-A36 |
0.609 |
|
| 2015 |
Poloz Y, Sheikh MZE, Petschnigg J, Groisman B, Kotlyar M, Jurisica I, Stagljar I, Stambolic V. Abstract A20: Insulin receptor signaling in mammary epithelial cells Molecular Cancer Therapeutics. 14. DOI: 10.1158/1538-8514.Pi3K14-A20 |
0.579 |
|
| 2014 |
Lapin V, Shirdel EA, Wei X, Mason JM, Jurisica I, Mak TW. Kinome-wide screening of HER2+ breast cancer cells for molecules that mediate cell proliferation or sensitize cells to trastuzumab therapy. Oncogenesis. 3: e133. PMID 25500906 DOI: 10.1038/oncsis.2014.45 |
0.772 |
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| 2014 |
Petschnigg J, Groisman B, Kotlyar M, Taipale M, Zheng Y, Kurat CF, Sayad A, Sierra JR, Mattiazzi Usaj M, Snider J, Nachman A, Krykbaeva I, Tsao MS, Moffat J, Pawson T, ... ... Jurisica I, et al. The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells. Nature Methods. 11: 585-92. PMID 24658140 DOI: 10.1038/Nmeth.2895 |
0.603 |
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| 2014 |
Kittanakom S, Barrios-Rodiles M, Petschnigg J, Arnoldo A, Wong V, Kotlyar M, Heisler LE, Jurisica I, Wrana JL, Nislow C, Stagljar I. CHIP-MYTH: a novel interactive proteomics method for the assessment of agonist-dependent interactions of the human β₂-adrenergic receptor. Biochemical and Biophysical Research Communications. 445: 746-56. PMID 24561123 DOI: 10.1016/J.Bbrc.2014.02.033 |
0.615 |
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| 2014 |
Pastrello C, Pasini E, Kotlyar M, Otasek D, Wong S, Sangrar W, Rahmati S, Jurisica I. Integration, visualization and analysis of human interactome. Biochemical and Biophysical Research Communications. 445: 757-73. PMID 24491561 DOI: 10.1016/J.Bbrc.2014.01.151 |
0.6 |
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| 2014 |
Der SD, Sykes J, Pintilie M, Zhu CQ, Strumpf D, Liu N, Jurisica I, Shepherd FA, Tsao MS. Validation of a histology-independent prognostic gene signature for early-stage, non-small-cell lung cancer including stage IA patients. Journal of Thoracic Oncology : Official Publication of the International Association For the Study of Lung Cancer. 9: 59-64. PMID 24305008 DOI: 10.1097/Jto.0000000000000042 |
0.303 |
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| 2014 |
Navab R, Hao J, Sakashita S, Wang D, Pintilier M, Wang Y, Zhu C, Venkat K, Jurisica I, Tsao M. Abstract 4800: Heterogeneity of cancer associated fibroblasts in non-small cell lung cancer is defined by the level of collagen gel contraction activity Cancer Research. 74: 4800-4800. DOI: 10.1158/1538-7445.Am2014-4800 |
0.351 |
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| 2013 |
Jurisica I. Integrative cancer informatics for the identification of prognostic and predictive biomarkers. Bmc Proceedings. 7: K7. PMID 24764486 DOI: 10.1186/1753-6561-7-S2-K7 |
0.412 |
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| 2013 |
Ponzielli R, Tu WB, Jurisica I, Penn LZ. Identifying Myc interactors. Methods in Molecular Biology (Clifton, N.J.). 1012: 51-64. PMID 24006057 DOI: 10.1007/978-1-62703-429-6_4 |
0.314 |
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| 2013 |
Vafaee F, Rosu D, Broackes-Carter F, Jurisica I. Novel semantic similarity measure improves an integrative approach to predicting gene functional associations. Bmc Systems Biology. 7: 22. PMID 23497449 DOI: 10.1186/1752-0509-7-22 |
0.337 |
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| 2013 |
Cirilo PD, Marchi FA, Barros Filho Mde C, Rocha RM, Domingues MA, Jurisica I, Pontes A, Rogatto SR. An integrative genomic and transcriptomic analysis reveals potential targets associated with cell proliferation in uterine leiomyomas. Plos One. 8: e57901. PMID 23483937 DOI: 10.1371/Journal.Pone.0057901 |
0.312 |
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| 2013 |
Pastrello C, Otasek D, Fortney K, Agapito G, Cannataro M, Shirdel E, Jurisica I. Visual data mining of biological networks: one size does not fit all. Plos Computational Biology. 9: e1002833. PMID 23341759 DOI: 10.1371/Journal.Pcbi.1002833 |
0.77 |
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| 2013 |
Fortney K, Xie W, Kotlyar M, Griesman J, Kotseruba Y, Jurisica I. NetwoRx: connecting drugs to networks and phenotypes in Saccharomyces cerevisiae. Nucleic Acids Research. 41: D720-7. PMID 23203867 DOI: 10.1093/Nar/Gks1106 |
0.721 |
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| 2013 |
Berger T, Ueda T, Arpaia E, Chio II, Shirdel EA, Jurisica I, Hamada K, You-Ten A, Haight J, Wakeham A, Cheung CC, Mak TW. Flotillin-2 deficiency leads to reduced lung metastases in a mouse breast cancer model. Oncogene. 32: 4989-94. PMID 23146906 DOI: 10.1038/Onc.2012.499 |
0.776 |
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| 2012 |
Starmans MH, Pintilie M, John T, Der SD, Shepherd FA, Jurisica I, Lambin P, Tsao MS, Boutros PC. Exploiting the noise: improving biomarkers with ensembles of data analysis methodologies. Genome Medicine. 4: 84. PMID 23146350 DOI: 10.1186/Gm385 |
0.307 |
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| 2012 |
Kotlyar M, Fortney K, Jurisica I. Network-based characterization of drug-regulated genes, drug targets, and toxicity. Methods (San Diego, Calif.). 57: 499-507. PMID 22749929 DOI: 10.1016/J.Ymeth.2012.06.003 |
0.728 |
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| 2012 |
Fortney K, Morgen EK, Kotlyar M, Jurisica I. In silico drug screen in mouse liver identifies candidate calorie restriction mimetics. Rejuvenation Research. 15: 148-52. PMID 22533420 DOI: 10.1089/Rej.2011.1263 |
0.724 |
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| 2012 |
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman FS, Brinkman F, Cesareni G, Chatr-aryamontri A, Chautard E, Chen C, Dumousseau M, ... ... Jurisica I, et al. Protein interaction data curation: the International Molecular Exchange (IMEx) consortium. Nature Methods. 9: 345-50. PMID 22453911 DOI: 10.1038/Nmeth.1931 |
0.31 |
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| 2012 |
Hai J, Zhu CQ, Bandarchi B, Wang YH, Navab R, Shepherd FA, Jurisica I, Tsao MS. L1 cell adhesion molecule promotes tumorigenicity and metastatic potential in non-small cell lung cancer. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 18: 1914-24. PMID 22307136 DOI: 10.1158/1078-0432.Ccr-11-2893 |
0.313 |
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| 2012 |
Singh N, Shirdel EA, Waldron L, Zhang RH, Jurisica I, Comelli EM. The murine caecal microRNA signature depends on the presence of the endogenous microbiota. International Journal of Biological Sciences. 8: 171-86. PMID 22211115 DOI: 10.7150/Ijbs.8.171 |
0.774 |
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| 2012 |
King AD, Pržulj N, Jurisica I. Protein complex prediction with RNSC. Methods in Molecular Biology (Clifton, N.J.). 804: 297-312. PMID 22144160 DOI: 10.1007/978-1-61779-361-5_16 |
0.315 |
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| 2012 |
Geraci J, Liu G, Jurisica I. Algorithms for systematic identification of small subgraphs. Methods in Molecular Biology (Clifton, N.J.). 804: 219-44. PMID 22144156 DOI: 10.1007/978-1-61779-361-5_12 |
0.319 |
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| 2012 |
Heifets A, Jurisica I. SCRIPDB: a portal for easy access to syntheses, chemicals and reactions in patents. Nucleic Acids Research. 40: D428-33. PMID 22067445 DOI: 10.1093/Nar/Gkr919 |
0.76 |
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| 2012 |
Moran MF, To C, Wei Y, Li L, Taylor P, Ignatchenko V, Strumpf D, Tong J, Pham N, Jurisica I, Muthuswamy L, Kislinger T, Tsao M. Abstract 5127: Characterization of lung cancers by integrated genomic and proteomic analysis Cancer Research. 72: 5127-5127. DOI: 10.1158/1538-7445.Am2012-5127 |
0.34 |
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| 2012 |
To C, Strumpf D, Panchal D, Li M, Pham N, Xie W, Yanagawa N, Bandarchi B, Chui MH, Der S, Shepherd FA, Kislinger T, Moran M, Jurisica I, Muthuswamy L, et al. Abstract 5069: Genomic profiles of primary non-small cell lung cancer (NSCLC) xenograft tumors identify distinct gene signatures associated with histological subtypes Cancer Research. 72: 5069-5069. DOI: 10.1158/1538-7445.Am2012-5069 |
0.367 |
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| 2012 |
Wong S, Kotlyar M, Strumpf D, Cercone N, Shepherd FA, Tsao M, Jurisica I. Abstract 4912: Systematic, comparative network analysis on non-small cell lung cancer Cancer Research. 72: 4912-4912. DOI: 10.1158/1538-7445.Am2012-4912 |
0.628 |
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| 2012 |
Orchard S, Kerrien S, Abbani S, Aranda B, Bhate J, Bidwell S, Bridge A, Briganti L, Brinkman F, Cesareni G, Chatr-Aryamontri A, Chautard E, Chen C, Dumousseau M, Goll J, ... ... Jurisica I, et al. Corrigendum: Protein interaction data curation: The International Molecular Exchange (IMEx) consortium (Nature Methods (2012) 9, (345-350)) Nature Methods. 9: 626. DOI: 10.1038/Nmeth0612-626A |
0.305 |
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| 2012 |
Heifets A, Jurisica I. Construction of new medicines via game proof search Proceedings of the National Conference On Artificial Intelligence. 2: 1564-1570. |
0.761 |
|
| 2011 |
Fortney K, Jurisica I. Integrative computational biology for cancer research. Human Genetics. 130: 465-81. PMID 21691773 DOI: 10.1007/S00439-011-0983-Z |
0.639 |
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| 2011 |
Yakhini Z, Jurisica I. Cancer computational biology. Bmc Bioinformatics. 12: 120. PMID 21521513 DOI: 10.1186/1471-2105-12-120 |
0.369 |
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| 2011 |
Elschenbroich S, Ignatchenko V, Clarke B, Kalloger SE, Boutros PC, Gramolini AO, Shaw P, Jurisica I, Kislinger T. In-depth proteomics of ovarian cancer ascites: combining shotgun proteomics and selected reaction monitoring mass spectrometry. Journal of Proteome Research. 10: 2286-99. PMID 21491939 DOI: 10.1021/Pr1011087 |
0.337 |
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| 2011 |
Navab R, Strumpf D, Bandarchi B, Zhu CQ, Pintilie M, Ramnarine VR, Ibrahimov E, Radulovich N, Leung L, Barczyk M, Panchal D, To C, Yun JJ, Der S, Shepherd FA, ... Jurisica I, et al. Prognostic gene-expression signature of carcinoma-associated fibroblasts in non-small cell lung cancer. Proceedings of the National Academy of Sciences of the United States of America. 108: 7160-5. PMID 21474781 DOI: 10.1073/Pnas.1014506108 |
0.368 |
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| 2011 |
Shirdel EA, Xie W, Mak TW, Jurisica I. NAViGaTing the micronome--using multiple microRNA prediction databases to identify signalling pathway-associated microRNAs. Plos One. 6: e17429. PMID 21364759 DOI: 10.1371/Journal.Pone.0017429 |
0.783 |
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| 2011 |
Chang Q, Jurisica I, Do T, Hedley DW. Hypoxia predicts aggressive growth and spontaneous metastasis formation from orthotopically grown primary xenografts of human pancreatic cancer. Cancer Research. 71: 3110-20. PMID 21343390 DOI: 10.1158/0008-5472.Can-10-4049 |
0.305 |
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| 2011 |
Hai J, Zhu C, Der S, Jurisica I, Tsao M. Abstract 1404: L1CAM in non-small-cell lung carcinoma Cancer Research. 71: 1404-1404. DOI: 10.1158/1538-7445.Am2011-1404 |
0.341 |
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| 2011 |
Djebbari A, Ali M, Otasek D, Kotlyar M, Fortney K, Wong S, Hrvojic A, Jurisica I. Navigator: Large scalable and interactive navigation and analysis of large graphs Internet Mathematics. 7: 314-347. DOI: 10.1080/15427951.2011.604289 |
0.715 |
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| 2010 |
Boutros PC, Pintilie M, John T, Starmans MH, Der SD, Shepherd FA, Tsao MS, Jurisica I. Re: Gene expression-based prognostic signatures in lung cancer: ready for clinical use? Journal of the National Cancer Institute. 102: 1677-8; author reply. PMID 20921041 DOI: 10.1093/Jnci/Djq385 |
0.315 |
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| 2010 |
Zhu CQ, Ding K, Strumpf D, Weir BA, Meyerson M, Pennell N, Thomas RK, Naoki K, Ladd-Acosta C, Liu N, Pintilie M, Der S, Seymour L, Jurisica I, Shepherd FA, et al. Prognostic and predictive gene signature for adjuvant chemotherapy in resected non-small-cell lung cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 28: 4417-24. PMID 20823422 DOI: 10.1200/Jco.2009.26.4325 |
0.301 |
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| 2010 |
Clendening JW, Pandyra A, Boutros PC, El Ghamrasni S, Khosravi F, Trentin GA, Martirosyan A, Hakem A, Hakem R, Jurisica I, Penn LZ. Dysregulation of the mevalonate pathway promotes transformation. Proceedings of the National Academy of Sciences of the United States of America. 107: 15051-6. PMID 20696928 DOI: 10.1073/Pnas.0910258107 |
0.333 |
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| 2010 |
Fortney K, Kotlyar M, Jurisica I. Inferring the functions of longevity genes with modular subnetwork biomarkers of Caenorhabditis elegans aging. Genome Biology. 11: R13. PMID 20128910 DOI: 10.1186/Gb-2010-11-2-R13 |
0.718 |
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| 2010 |
Niu Y, Otasek D, Jurisica I. Evaluation of linguistic features useful in extraction of interactions from PubMed; application to annotating known, high-throughput and predicted interactions in I2D. Bioinformatics (Oxford, England). 26: 111-9. PMID 19850753 DOI: 10.1093/Bioinformatics/Btp602 |
0.321 |
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| 2010 |
Hai J, Radulovich N, Zhu C, Der SD, Jurisica I, Tsao M. Abstract 5049: Functional significance ofL1CAMin non-small cell lung cancer Cancer Research. 70: 5049-5049. DOI: 10.1158/1538-7445.Am10-5049 |
0.351 |
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| 2009 |
Zhu CQ, Pintilie M, John T, Strumpf D, Shepherd FA, Der SD, Jurisica I, Tsao MS. Understanding prognostic gene expression signatures in lung cancer. Clinical Lung Cancer. 10: 331-40. PMID 19808191 DOI: 10.3816/Clc.2009.N.045 |
0.359 |
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| 2009 |
Agarwal R, Jurisica I, Mills GB, Cheng KW. The emerging role of the RAB25 small GTPase in cancer. Traffic (Copenhagen, Denmark). 10: 1561-8. PMID 19719478 DOI: 10.1111/J.1600-0854.2009.00969.X |
0.33 |
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| 2009 |
Mills GB, Jurisica I, Yarden Y, Norman JC. Genomic amplicons target vesicle recycling in breast cancer. The Journal of Clinical Investigation. 119: 2123-7. PMID 19620778 DOI: 10.1172/Jci40256 |
0.317 |
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| 2009 |
Cox B, Kotlyar M, Evangelou AI, Ignatchenko V, Ignatchenko A, Whiteley K, Jurisica I, Adamson SL, Rossant J, Kislinger T. Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology. Molecular Systems Biology. 5: 279. PMID 19536202 DOI: 10.1038/Msb.2009.37 |
0.613 |
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| 2009 |
Savas S, Geraci J, Jurisica I, Liu G. A comprehensive catalogue of functional genetic variations in the EGFR pathway: protein-protein interaction analysis reveals novel genes and polymorphisms important for cancer research. International Journal of Cancer. Journal International Du Cancer. 125: 1257-65. PMID 19499547 DOI: 10.1002/Ijc.24535 |
0.345 |
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| 2009 |
Boutros PC, Lau SK, Pintilie M, Liu N, Shepherd FA, Der SD, Tsao MS, Penn LZ, Jurisica I. Prognostic gene signatures for non-small-cell lung cancer. Proceedings of the National Academy of Sciences of the United States of America. 106: 2824-8. PMID 19196983 DOI: 10.1073/Pnas.0809444106 |
0.34 |
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| 2009 |
Penn LZ, Clendening JW, Pandyra A, Boutros PC, Trentin GA, Martirosyan A, Trudel S, Jurisica I. Abstract B99: Dysregulation of HMGCR and the mevalonate pathway in human cancers Molecular Cancer Therapeutics. 8. DOI: 10.1158/1535-7163.Targ-09-B99 |
0.34 |
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| 2008 |
Jurisicova A, Jurisica I, Kislinger T. Advances in ovarian cancer proteomics: the quest for biomarkers and improved therapeutic interventions. Expert Review of Proteomics. 5: 551-60. PMID 18761466 DOI: 10.1586/14789450.5.4.551 |
0.327 |
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| 2008 |
Shedden K, Taylor JM, Enkemann SA, Tsao MS, Yeatman TJ, Gerald WL, Eschrich S, Jurisica I, Giordano TJ, Misek DE, Chang AC, Zhu CQ, Strumpf D, Hanash S, et al. Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study. Nature Medicine. 14: 822-7. PMID 18641660 DOI: 10.1038/Nm.1790 |
0.317 |
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| 2008 |
Sodek KL, Evangelou AI, Ignatchenko A, Agochiya M, Brown TJ, Ringuette MJ, Jurisica I, Kislinger T. Identification of pathways associated with invasive behavior by ovarian cancer cells using multidimensional protein identification technology (MudPIT). Molecular Biosystems. 4: 762-73. PMID 18563251 DOI: 10.1039/B717542F |
0.36 |
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| 2008 |
Gortzak-Uzan L, Ignatchenko A, Evangelou AI, Agochiya M, Brown KA, St Onge P, Kireeva I, Schmitt-Ulms G, Brown TJ, Murphy J, Rosen B, Shaw P, Jurisica I, Kislinger T. A proteome resource of ovarian cancer ascites: integrated proteomic and bioinformatic analyses to identify putative biomarkers. Journal of Proteome Research. 7: 339-51. PMID 18076136 DOI: 10.1021/Pr0703223 |
0.361 |
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| 2007 |
Wigle D, Jurisica I. Cancer as a system failure. Cancer Informatics. 5: 10-8. PMID 19390665 DOI: 10.4137/Cin.S0 |
0.366 |
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| 2007 |
Lau SK, Boutros PC, Pintilie M, Blackhall FH, Zhu CQ, Strumpf D, Johnston MR, Darling G, Keshavjee S, Waddell TK, Liu N, Lau D, Penn LZ, Shepherd FA, Jurisica I, et al. Three-gene prognostic classifier for early-stage non small-cell lung cancer. Journal of Clinical Oncology : Official Journal of the American Society of Clinical Oncology. 25: 5562-9. PMID 18065728 DOI: 10.1200/Jco.2007.12.0352 |
0.322 |
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| 2007 |
Brown KR, Jurisica I. Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biology. 8: R95. PMID 17535438 DOI: 10.1186/Gb-2007-8-5-R95 |
0.309 |
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| 2007 |
Cox B, Kislinger T, Wigle DA, Kannan A, Brown K, Okubo T, Hogan B, Jurisica I, Frey B, Rossant J, Emili A. Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes. Molecular Systems Biology. 3: 109. PMID 17486137 DOI: 10.1038/Msb4100151 |
0.351 |
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| 2007 |
Wu C, Ma MH, Brown KR, Geisler M, Li L, Tzeng E, Jia CY, Jurisica I, Li SS. Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. Proteomics. 7: 1775-85. PMID 17474147 DOI: 10.1002/Pmic.200601006 |
0.321 |
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| 2007 |
Motamed-Khorasani A, Jurisica I, Letarte M, Shaw PA, Parkes RK, Zhang X, Evangelou A, Rosen B, Murphy KJ, Brown TJ. Differentially androgen-modulated genes in ovarian epithelial cells from BRCA mutation carriers and control patients predict ovarian cancer survival and disease progression. Oncogene. 26: 198-214. PMID 16832351 DOI: 10.1038/Sj.Onc.1209773 |
0.347 |
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| 2007 |
May T, Sharma M, Jurisica I, Rosen B, Murphy J, Shaw P, Brown T. Characterization of low grade serous carcinoma of the ovary and its precursorss Clinical & Investigative Medicine. 30: 88. DOI: 10.25011/Cim.V30I4.2865 |
0.347 |
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| 2006 |
Bachtiary B, Boutros PC, Pintilie M, Shi W, Bastianutto C, Li JH, Schwock J, Zhang W, Penn LZ, Jurisica I, Fyles A, Liu FF. Gene expression profiling in cervical cancer: an exploration of intratumor heterogeneity. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 12: 5632-40. PMID 17020965 DOI: 10.1158/1078-0432.Ccr-06-0357 |
0.306 |
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| 2006 |
Shi W, Bastianutto C, Li A, Perez-Ordonez B, Ng R, Chow KY, Zhang W, Jurisica I, Lo KW, Bayley A, Kim J, O'Sullivan B, Siu L, Chen E, Liu FF. Multiple dysregulated pathways in nasopharyngeal carcinoma revealed by gene expression profiling. International Journal of Cancer. 119: 2467-75. PMID 16858677 DOI: 10.1002/Ijc.22107 |
0.319 |
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| 2006 |
Seiden-Long IM, Brown KR, Shih W, Wigle DA, Radulovich N, Jurisica I, Tsao MS. Transcriptional targets of hepatocyte growth factor signaling and Ki-ras oncogene activation in colorectal cancer. Oncogene. 25: 91-102. PMID 16158056 DOI: 10.1038/Sj.Onc.1209005 |
0.331 |
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| 2006 |
Bachtiary B, Boutros P, Pintilie M, Shi W, Schwock J, Penn L, Jurisica I, Fyles A, Liu F. 256 Gene expression profiling in cervical cancer — an exploration of intra-tumor heterogeneity Radiotherapy and Oncology. 78: S91. DOI: 10.1016/S0167-8140(06)80733-4 |
0.302 |
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| 2006 |
Kotlyar M, Jurisica I. Predicting protein-protein interactions by association mining Information Systems Frontiers. 8: 37-47. DOI: 10.1007/S10796-005-6102-8 |
0.607 |
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| 2006 |
Jurisica I, Glasgow J. Introduction: Knowledge discovery in high-throughput biological domains Information Systems Frontiers. 8: 5-7. DOI: 10.1007/S10796-005-6098-O |
0.535 |
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| 2005 |
Heisler LE, Torti D, Boutros PC, Watson J, Chan C, Winegarden N, Takahashi M, Yau P, Huang THM, Farnham PJ, Jurisica I, Woodgett JR, Bremner R, Penn LZ, Der SD. CpG Island microarray probe sequences derived from a physical library are representative of CpG Islands annotated on the human genome Nucleic Acids Research. 33: 2952-2961. PMID 15911630 DOI: 10.1093/Nar/Gki582 |
0.306 |
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| 2005 |
Barrios-Rodiles M, Brown KR, Ozdamar B, Bose R, Liu Z, Donovan RS, Shinjo F, Liu Y, Dembowy J, Taylor IW, Luga V, Przulj N, Robinson M, Suzuki H, Hayashizaki Y, ... Jurisica I, et al. High-throughput mapping of a dynamic signaling network in mammalian cells. Science (New York, N.Y.). 307: 1621-5. PMID 15761153 DOI: 10.1126/Science.1105776 |
0.317 |
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| 2005 |
Brown KR, Jurisica I. Online predicted human interaction database. Bioinformatics (Oxford, England). 21: 2076-82. PMID 15657099 DOI: 10.1093/Bioinformatics/Bti273 |
0.329 |
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| 2005 |
Lau S, Zhu C, Zhang W, Blackhall F, Liu N, Jurisica I, Shepherd F, Der S, Tsao M. P-625 Quantitative PCR validation of putative non-small cell lungcancer (NSCLC) prognostic marker genes derived from multiple published microarray databases and reports Lung Cancer. 49: S283. DOI: 10.1016/S0169-5002(05)81118-3 |
0.308 |
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| 2004 |
Blackhall FH, Wigle DA, Jurisica I, Pintilie M, Liu N, Darling G, Johnston MR, Keshavjee S, Waddell T, Winton T, Shepherd FA, Tsao MS. Validating the prognostic value of marker genes derived from a non-small cell lung cancer microarray study. Lung Cancer (Amsterdam, Netherlands). 46: 197-204. PMID 15474668 DOI: 10.1016/J.Lungcan.2004.04.002 |
0.33 |
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| 2004 |
Liu J, Blackhall F, Seiden-Long I, Jurisica I, Navab R, Liu N, Radulovich N, Wigle D, Sultan M, Hu J, Tsao MS, Johnston MR. Modeling of lung cancer by an orthotopically growing H460SM variant cell line reveals novel candidate genes for systemic metastasis. Oncogene. 23: 6316-24. PMID 15247903 DOI: 10.1038/Sj.Onc.1207795 |
0.318 |
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| 2004 |
King AD, Pržulj N, Jurisica I. Protein complex prediction via cost-based clustering Bioinformatics. 20: 3013-3020. PMID 15180928 DOI: 10.1093/Bioinformatics/Bth351 |
0.305 |
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| 2004 |
Warner GC, Reis PP, Jurisica I, Sultan M, Arora S, Macmillan C, Makitie AA, Grénman R, Reid N, Sukhai M, Freeman J, Gullane P, Irish J, Kamel-Reid S. Molecular classification of oral cancer by cDNA microarrays identifies overexpressed genes correlated with nodal metastasis. International Journal of Cancer. Journal International Du Cancer. 110: 857-68. PMID 15170668 DOI: 10.1002/Ijc.20197 |
0.335 |
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| 2004 |
Pržulj N, Wigle DA, Jurisica I. Functional topology in a network of protein interactions Bioinformatics. 20: 340-348. PMID 14960460 DOI: 10.1093/Bioinformatics/Btg415 |
0.344 |
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| 2004 |
Wigle DA, Tsao M, Jurisica I. Making sense of lung-cancer gene-expression profiles Genome Biology. 5. PMID 14759255 DOI: 10.1186/Gb-2004-5-2-309 |
0.331 |
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| 2004 |
Warner GC, Reis PP, Makitie AA, Sukhai MA, Arora S, Jurisica I, Wells RA, Gullane P, Irish J, Kamel-Reid S. Current Applications of Microarrays in Head and Neck Cancer Research Laryngoscope. 114: 241-248. PMID 14755198 DOI: 10.1097/00005537-200402000-00013 |
0.316 |
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| 2004 |
Jurisica I, Glasgow J. Applications of Case-Based Reasoning in Molecular Biology Ai Magazine. 25: 85-95. DOI: 10.1609/Aimag.V25I1.1749 |
0.494 |
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| 2004 |
Glasgow J, Jurisica I, Rost B. AI and Bioinformatics Ai Magazine. 25: 7-8. DOI: 10.1609/Aimag.V25I1.1743 |
0.473 |
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| 2004 |
Jurisica I, Mylopoulos J, Yu E. Ontologies for Knowledge Management: An Information Systems Perspective Knowledge and Information Systems. 6: 380-401. DOI: 10.1007/S10115-003-0135-4 |
0.508 |
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| 2002 |
Sultan M, Wigle DA, Cumbaa CA, Maziarz M, Glasgow J, Tsao MS, Jurisica I. Binary tree-structured vector quantization approach to clustering and visualizing microarray data. Bioinformatics (Oxford, England). 18: S111-9. PMID 12169538 DOI: 10.1093/bioinformatics/18.suppl_1.S111 |
0.434 |
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| 2001 |
Wigle DA, Rossant J, Jurisica I. Mining mouse microarray data Genome Biology. 2. PMID 11516341 DOI: 10.1186/Gb-2001-2-7-Reviews1019 |
0.308 |
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| 2001 |
Jurisica I, Rogers P, Glasgow JI, Fortier S, Luft JR, Wolfley JR, Bianca MA, Weeks DR, DeTitta GT. Intelligent decision support for protein crystal growth Ibm Systems Journal. 40: 394-409. DOI: 10.1147/Sj.402.0394 |
0.488 |
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| 2001 |
Jurisica I, Rogers P, Glasgow JI, Collins RJ, Wolfley JR, Luft JR, DeTitta GT. Improving objectivity and scalability in protein crystallization Ieee Intelligent Systems and Their Applications. 16: 26-34. DOI: 10.1109/5254.972075 |
0.496 |
|
| 2001 |
Luft JR, Wolfley J, Jurisica I, Glasgow J, Fortier S, DeTitta GT. Macromolecular crystallization in a high throughput laboratory - The search phase Journal of Crystal Growth. 232: 591-595. DOI: 10.1016/S0022-0248(01)01206-4 |
0.472 |
|
| 2001 |
Jurisica I, Rogers P, Glasgow J, Fortier S, Luft J, Bianca M, Collins R, De Titta G. Image-feature extraction for protein crystallization: Integrating image analysis and case-based reasoning Innovative Applications of Artificial Intelligence - Conference Proceedings. 73-80. |
0.411 |
|
| 2001 |
DeTitta GT, Bianca MA, Collins RJ, Faust AME, Kaczmarek JN, Luft JR, Fehrman NA, Pangborn WA, Salerno JM, Wolfley JR, Jurisica I, Rogers P, Quon G, Glasgow J, Fortier S. Macromolecular crystallization in a high throughput setting 2001 Conference and Exhibit On International Space Station Utilization. |
0.391 |
|
| 2000 |
Jurisica I, Glasgow J. Extending case-based reasoning by discovering and using image features in IVF Proceedings of the Acm Symposium On Applied Computing. 1: 52-59. DOI: 10.1145/335603.335693 |
0.389 |
|
| 2000 |
Luft JR, Wolfley J, Collins R, Bianca M, Weeks D, Jurisica I, Rogers P, Glasgow J, Fortier S, DeTitta G. Gearing Up for Structural Genomics: The Challenge of Hundreds of Proteins and Hundreds of Thousands of Crystallization Experiments Per Year Acta Crystallographica Section a Foundations of Crystallography. 56: s57-s57. DOI: 10.1107/S0108767300021991 |
0.483 |
|
| 2000 |
Jurisica I, Glasgow J, Mylopoulos J. Incremental iterative retrieval and browsing for efficient conversational CBR systems Applied Intelligence. 12: 251-268. DOI: 10.1023/A:1008375309626 |
0.621 |
|
| 1998 |
Jurisica I, Mylopoulos J, Glasgow J, Shapiro H, Casper RF. Case-based reasoning in IVF: prediction and knowledge mining. Artificial Intelligence in Medicine. 12: 1-24. PMID 9475949 DOI: 10.1016/S0933-3657(97)00037-7 |
0.63 |
|
| 1998 |
Jurisica I, Glasgow J. An efficient approach to iterative browsing and retrieval for case-based reasoning Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1416: 535-546. DOI: 10.1007/3-540-64574-8_439 |
0.395 |
|
| 1997 |
Jurisica I, Glasgow J. Improving Performance of Case-Based Classification Using Context-Based Relevance International Journal On Artificial Intelligence Tools. 6: 511-536. DOI: 10.1142/S0218213097000268 |
0.49 |
|
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