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John L. Markley - Publications

Affiliations: 
1972-1984 Chemistry Purdue University, West Lafayette, IN, United States 
 1984- Biochemistry University of Wisconsin, Madison, Madison, WI 
Area:
NMR spectroscopy and its biological applications
Website:
http://www.biochem.wisc.edu/faculty/markley/
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Year Citation  Score
2022 Dwarasala A, Rahimi M, Markley JL, Lee W. ssPINE: Probabilistic Algorithm for Automated Chemical Shift Assignment of Solid-State NMR Data from Complex Protein Systems. Membranes. 12. PMID 36135853 DOI: 10.3390/membranes12090834  0.808
2022 Manthey I, Tonelli M, Ii LC, Rahimi M, Markley JL, Lee W. POKY software tools encapsulating assignment strategies for solution and solid-state protein NMR data. Journal of Structural Biology: X. 6: 100073. PMID 36081577 DOI: 10.1016/j.yjsbx.2022.100073  0.717
2021 Rahimi M, Lee Y, Markley JL, Lee W. iPick: Multiprocessing software for integrated NMR signal detection and validation. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 328: 106995. PMID 34004411 DOI: 10.1016/j.jmr.2021.106995  0.666
2020 Shao H, Boulton S, Olivieri C, Mohamed H, Akimoto M, Subrahmanian MV, Veglia G, Markley JL, Melacini G, Lee W. CHESPA/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery. Bioinformatics (Oxford, England). PMID 32926121 DOI: 10.1093/Bioinformatics/Btaa781  0.528
2020 Dashti H, Westler WM, Wedell JR, Demler OV, Eghbalnia HR, Markley JL, Mora S. Probabilistic identification of saccharide moieties in biomolecules and their protein complexes. Scientific Data. 7: 210. PMID 32620933 DOI: 10.1038/S41597-020-0547-Y  0.746
2020 Aceti DJ, Ahmed H, Westler WM, Wu C, Dashti H, Tonelli M, Eghbalnia H, Amarasinghe GK, Markley JL. Fragment screening targeting Ebola virus nucleoprotein C-terminal domain identifies lead candidates. Antiviral Research. 104822. PMID 32446802 DOI: 10.1016/J.Antiviral.2020.104822  0.739
2020 Alhajala HS, Markley JL, Kim JH, Al-Gizawiy MM, Schmainda KM, Kuo JS, Chitambar CR. The cytotoxicity of gallium maltolate in glioblastoma cells is enhanced by metformin through combined action on mitochondrial complex 1. Oncotarget. 11: 1531-1544. PMID 32391122 DOI: 10.18632/Oncotarget.27567  0.36
2020 Cai K, Frederick RO, Markley JL. 2mISCU interacts with NFU1, and ISCU[4Fe-4S] transfers its Fe-S cluster to NFU1 leading to the production of holo-NFU1. Journal of Structural Biology. 107491. PMID 32151725 DOI: 10.1016/J.Jsb.2020.107491  0.308
2020 Barnett BR, Fathi F, Falco Cobra P, Yi SY, Anderson JM, Eghbalnia HR, Markley JL, Yu JJ. Metabolic Changes in Synaptosomes in an Animal Model of Schizophrenia Revealed by H and H,C NMR Spectroscopy. Metabolites. 10. PMID 32102223 DOI: 10.3390/Metabo10020079  0.311
2020 Romero PR, Kobayashi N, Wedell JR, Baskaran K, Iwata T, Yokochi M, Maziuk D, Yao H, Fujiwara T, Kurusu G, Ulrich EL, Hoch JC, Markley JL. BioMagResBank (BMRB) as a Resource for Structural Biology. Methods in Molecular Biology (Clifton, N.J.). 2112: 187-218. PMID 32006287 DOI: 10.1007/978-1-0716-0270-6_14  0.392
2020 Weber DK, Wang S, Markley JL, Veglia G, Lee W. PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins. Bioinformatics (Oxford, England). PMID 31930377 DOI: 10.1093/Bioinformatics/Btaa019  0.528
2020 Tanrikulu IC, Westler WM, Ellison AJ, Markley JL, Raines RT. Templated Collagen "Double Helices" Maintain Their Structure. Journal of the American Chemical Society. PMID 31895554 DOI: 10.1021/Jacs.9B07583  0.306
2020 Lee W, Tonelli M, Frederick RO, Haruta M, Cornilescu G, Cornilescu CC, Sussman MR, Markley JL. Solution Structure Determination of Arabidopsis Thaliana RALF8 Illustrates the use of Cutting-Edge Software Developed at the National Magnetic Resonance Facility at Madison Biophysical Journal. 118: 62a. DOI: 10.1016/J.Bpj.2019.11.514  0.485
2019 Bortnov V, Tonelli M, Lee W, Lin Z, Annis DS, Demerdash ON, Bateman A, Mitchell JC, Ge Y, Markley JL, Mosher DF. Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum. Nature Communications. 10: 5612. PMID 31819058 DOI: 10.1038/S41467-019-13577-5  0.522
2019 Markley JL, Dashti H, Wedell JR, Westler WM, Eghbalnia HR. Tools for Enhanced NMR-Based Metabolomics Analysis. Methods in Molecular Biology (Clifton, N.J.). 2037: 413-427. PMID 31463858 DOI: 10.1007/978-1-4939-9690-2_23  0.733
2019 Lee W, Bahrami A, Dashti HT, Eghbalnia HR, Tonelli M, Westler WM, Markley JL. I-PINE web server: an integrative probabilistic NMR assignment system for proteins. Journal of Biomolecular Nmr. PMID 31165321 DOI: 10.1007/S10858-019-00255-3  0.819
2019 Shrestha OK, Sharma R, Tomiczek B, Lee W, Tonelli M, Cornilescu G, Stolarska M, Nierzwicki L, Czub J, Markley JL, Marszalek J, Ciesielski SJ, Craig EA. Structure and evolution of the 4-helix bundle domain of Zuotin, a J-domain protein co-chaperone of Hsp70. Plos One. 14: e0217098. PMID 31091298 DOI: 10.1371/Journal.Pone.0217098  0.504
2019 Lee W, Tonelli M, Wu C, Aceti DJ, Amarasinghe GK, Markley JL. Backbone resonance assignments and secondary structure of Ebola nucleoprotein 600-739 construct. Biomolecular Nmr Assignments. PMID 31076990 DOI: 10.1007/S12104-019-09898-7  0.564
2019 Frederick RO, Haruta M, Tonelli M, Lee W, Cornilescu G, Cornilescu CC, Sussman MR, Markley JL. Function and solution structure of the Arabidopsis thaliana RALF8 peptide. Protein Science : a Publication of the Protein Society. PMID 31004454 DOI: 10.1002/Pro.3628  0.55
2019 Dashti H, Wedell JR, Westler WM, Markley JL, Eghbalnia HR. Automated evaluation of consistency within the PubChem Compound database. Scientific Data. 6: 190023. PMID 30778259 DOI: 10.1038/Sdata.2019.23  0.724
2018 Markley JL. Current Solution NMR Techniques for Structure-Function Studies of Proteins and RNA Molecules. Advances in Experimental Medicine and Biology. 1105: 43-58. PMID 30617823 DOI: 10.1007/978-981-13-2200-6_5  0.388
2018 Markley JL. View from Nuclear Magnetic Resonance Spectroscopy. Advances in Experimental Medicine and Biology. 1105: 19-22. PMID 30617821 DOI: 10.1007/978-981-13-2200-6_3  0.41
2018 Ulrich EL, Baskaran K, Dashti H, Ioannidis YE, Livny M, Romero PR, Maziuk D, Wedell JR, Yao H, Eghbalnia HR, Hoch JC, Markley JL. NMR-STAR: comprehensive ontology for representing, archiving and exchanging data from nuclear magnetic resonance spectroscopic experiments. Journal of Biomolecular Nmr. PMID 30580387 DOI: 10.1007/S10858-018-0220-3  0.738
2018 Cai K, Markley JL. NMR as a Tool to Investigate the Processes of Mitochondrial and Cytosolic Iron-Sulfur Cluster Biosynthesis. Molecules (Basel, Switzerland). 23. PMID 30200358 DOI: 10.3390/Molecules23092213  0.329
2018 Dashti H, Wedell JR, Westler WM, Tonelli M, Aceti DJ, Amarasinghe GK, Markley JL, Eghbalnia HR. Applications of parameterized NMR spin systems of small molecules. Analytical Chemistry. PMID 30125102 DOI: 10.1021/Acs.Analchem.8B02660  0.737
2018 Larsen EK, Olivieri C, Walker C, V S M, Gao J, Bernlohr DA, Tonelli M, Markley JL, Veglia G. Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy. Molecules (Basel, Switzerland). 23. PMID 30081441 DOI: 10.3390/Molecules23081937  0.412
2018 Cai K, Frederick RO, Dashti H, Markley JL. Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. Structure (London, England : 1993). PMID 29983374 DOI: 10.1016/J.Str.2018.05.017  0.735
2018 Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, ... ... Markley JL, et al. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database : the Journal of Biological Databases and Curation. 2018. PMID 29688351 DOI: 10.1093/Database/Bay002  0.305
2017 Lee W, Markley JL. PINE-SPARKY.2 for automated NMR-based protein structure research. Bioinformatics (Oxford, England). PMID 29281006 DOI: 10.1093/Bioinformatics/Btx785  0.578
2017 Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, ... ... Markley JL, et al. Validation of Structures in the Protein Data Bank. Structure (London, England : 1993). 25: 1916-1927. PMID 29174494 DOI: 10.1016/J.Str.2017.10.009  0.321
2017 Schilke BA, Ciesielski SJ, Ziegelhoffer T, Kamiya E, Tonelli M, Lee W, Cornilescu G, Hines JK, Markley JL, Craig EA. Broadening the functionality of a J-protein/Hsp70 molecular chaperone system. Plos Genetics. 13: e1007084. PMID 29084221 DOI: 10.1371/Journal.Pgen.1007084  0.504
2017 Dashti H, Westler WM, Tonelli M, Wedell JR, Markley JL, Eghbalnia HR. Spin System Modeling of NMR Spectra for Applications in Metabolomics and Small Molecule Screening. Analytical Chemistry. PMID 29058410 DOI: 10.1021/Acs.Analchem.7B02884  0.742
2017 Wyche TP, Alvarenga RFR, Piotrowski JS, Duster MN, Warrack SR, Cornilescu G, De Wolfe TJ, Hou Y, Braun DR, Ellis GA, Simpkins SW, Nelson J, Myers CL, Steele J, Mori H, ... ... Markley JL, et al. Chemical Genomics, Structure Elucidation, and In Vivo Studies of the Marine-derived Anticlostridial Ecteinamycin. Acs Chemical Biology. PMID 28708379 DOI: 10.1021/Acschembio.7B00388  0.314
2017 Cornilescu G, Ramos Alvarenga RF, Wyche TP, Bugni TS, Gil RR, Cornilescu CC, Westler WM, Markley JL, Schwieters CD. Progressive Stereo Locking (PSL) - A Residual Dipolar Coupling Based Force Field Method for Determining the Relative Configuration of Natural Products and other Small Molecules. Acs Chemical Biology. PMID 28617580 DOI: 10.1021/Acschembio.7B00281  0.334
2017 Burley SK, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. Methods in Molecular Biology (Clifton, N.J.). 1607: 627-641. PMID 28573592 DOI: 10.1007/978-1-4939-7000-1_26  0.354
2017 Dashti H, Westler WM, Markley JL, Eghbalnia HR. Unique identifiers for small molecules enable rigorous labeling of their atoms. Scientific Data. 4: 170073. PMID 28534867 DOI: 10.1038/Sdata.2017.73  0.715
2017 Markley JL, Westler WM. Biomolecular NMR: Past and future. Archives of Biochemistry and Biophysics. PMID 28495511 DOI: 10.1016/J.Abb.2017.05.003  0.333
2017 Chae YK, Kim SH, Markley JL. Relationship between recombinant protein expression and host metabolome as determined by two-dimensional NMR spectroscopy. Plos One. 12: e0177233. PMID 28486539 DOI: 10.1371/Journal.Pone.0177233  0.573
2016 Yokochi M, Kobayashi N, Ulrich EL, Kinjo AR, Iwata T, Ioannidis YE, Livny M, Markley JL, Nakamura H, Kojima C, Fujiwara T. Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins. Journal of Biomedical Semantics. 7: 16. PMID 27927232 DOI: 10.1186/S13326-016-0057-1  0.342
2016 Cai K, Liu G, Frederick RO, Xiao R, Montelione GT, Markley JL. Structural/Functional Properties of Human NFU1, an Intermediate [4Fe-4S] Carrier in Human Mitochondrial Iron-Sulfur Cluster Biogenesis. Structure (London, England : 1993). PMID 27818104 DOI: 10.1016/J.Str.2016.08.020  0.355
2016 Markley JL, Brüschweiler R, Edison AS, Eghbalnia HR, Powers R, Raftery D, Wishart DS. The future of NMR-based metabolomics. Current Opinion in Biotechnology. 43: 34-40. PMID 27580257 DOI: 10.1016/J.Copbio.2016.08.001  0.6
2016 Alderson TR, Kim JH, Markley JL. Dynamical Structures of Hsp70 and Hsp70-Hsp40 Complexes. Structure (London, England : 1993). PMID 27345933 DOI: 10.1016/J.Str.2016.05.011  0.387
2016 Lee W, Petit CM, Cornilescu G, Stark JL, Markley JL. The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data. Journal of Biomolecular Nmr. PMID 27169728 DOI: 10.1007/S10858-016-0036-Y  0.559
2016 Lee W, Cornilescu G, Dashti H, Eghbalnia HR, Tonelli M, Westler WM, Butcher SE, Henzler-Wildman KA, Markley JL. Integrative NMR for biomolecular research. Journal of Biomolecular Nmr. PMID 27023095 DOI: 10.1007/S10858-016-0029-X  0.767
2016 Stark JL, Eghbalnia HR, Lee W, Westler WM, Markley JL. NMRmix: A Tool for the Optimization of Compound Mixtures in 1D (1)H NMR Ligand Affinity Screens. Journal of Proteome Research. PMID 26965640 DOI: 10.1021/Acs.Jproteome.6B00121  0.511
2016 Dashti H, Tonelli M, Lee W, Westler WM, Cornilescu G, Ulrich EL, Markley JL. Probabilistic validation of protein NMR chemical shift assignments. Journal of Biomolecular Nmr. PMID 26724815 DOI: 10.1007/S10858-015-0007-8  0.791
2015 Singarapu KK, Tonelli M, Markley JL, Assadi-Porter FM. Structure-function relationships of brazzein variants with altered interactions with the human sweet taste receptor. Protein Science : a Publication of the Protein Society. PMID 26701738 DOI: 10.1002/Pro.2870  0.388
2015 Singarapu KK, Otte MM, Tonelli M, Westler WM, Escalante-Semerena JC, Markley JL. Solution Structural Studies of GTP:Adenosylcobinamide-Phosphateguanylyl Transferase (CobY) from Methanocaldococcus jannaschii. Plos One. 10: e0141297. PMID 26513744 DOI: 10.1371/Journal.Pone.0141297  0.405
2015 Bothe JR, Tonelli M, Ali IK, Dai Z, Frederick RO, Westler WM, Markley JL. The Complex Energy Landscape of the Protein IscU. Biophysical Journal. 109: 1019-25. PMID 26331259 DOI: 10.1016/J.Bpj.2015.07.045  0.531
2015 Chen VB, Wedell JR, Wenger RK, Ulrich EL, Markley JL. MolProbity for the masses-of data. Journal of Biomolecular Nmr. 63: 77-83. PMID 26195077 DOI: 10.1007/S10858-015-9969-9  0.327
2015 Gutmanas A, Adams PD, Bardiaux B, Berman HM, Case DA, Fogh RH, Güntert P, Hendrickx PM, Herrmann T, Kleywegt GJ, Kobayashi N, Lange OF, Markley JL, Montelione GT, Nilges M, et al. NMR Exchange Format: a unified and open standard for representation of NMR restraint data. Nature Structural & Molecular Biology. 22: 433-4. PMID 26036565 DOI: 10.1038/Nsmb.3041  0.357
2015 Dashti H, Tonelli M, Markley JL. ADAPT-NMR 3.0: utilization of BEST-type triple-resonance NMR experiments to accelerate the process of data collection and assignment. Journal of Biomolecular Nmr. PMID 26021595 DOI: 10.1007/S10858-015-9950-7  0.751
2015 Dashti H, Lee W, Tonelli M, Cornilescu CC, Cornilescu G, Assadi-Porter FM, Westler WM, Eghbalnia HR, Markley JL. NMRFAM-SDF: a protein structure determination framework. Journal of Biomolecular Nmr. PMID 25900069 DOI: 10.1007/S10858-015-9933-8  0.786
2015 Aceti DJ, Bingman CA, Wrobel RL, Frederick RO, Makino S, Nichols KW, Sahu SC, Bergeman LF, Blommel PG, Cornilescu CC, Gromek KA, Seder KD, Hwang S, Primm JG, Sabat G, ... ... Markley JL, et al. Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies. Journal of Structural and Functional Genomics. 16: 67-80. PMID 25854603 DOI: 10.1007/S10969-015-9198-1  0.316
2015 Lee W, Tonelli M, Markley JL. NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy. Bioinformatics (Oxford, England). 31: 1325-7. PMID 25505092 DOI: 10.1093/Bioinformatics/Btu830  0.539
2015 Kim JH, Bothe JR, Alderson TR, Markley JL. Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies. Biochimica Et Biophysica Acta. 1853: 1416-1428. PMID 25450980 DOI: 10.1016/J.Bbamcr.2014.11.020  0.41
2015 Tonelli M, Eller CH, Singarapu KK, Lee W, Bahrami A, Westler WM, Raines RT, Markley JL. Assignments of RNase A by ADAPT-NMR and enhancer. Biomolecular Nmr Assignments. 9: 81-8. PMID 24619609 DOI: 10.1007/S12104-014-9549-Z  0.757
2014 Alderson TR, Kim JH, Cai K, Frederick RO, Tonelli M, Markley JL. The specialized Hsp70 (HscA) interdomain linker binds to its nucleotide-binding domain and stimulates ATP hydrolysis in both cis and trans configurations. Biochemistry. 53: 7148-59. PMID 25372495 DOI: 10.1021/Bi501490V  0.422
2014 Lee W, Stark JL, Markley JL. PONDEROSA-C/S: client-server based software package for automated protein 3D structure determination. Journal of Biomolecular Nmr. 60: 73-5. PMID 25190042 DOI: 10.1007/S10858-014-9855-X  0.556
2014 Kim JH, Alderson TR, Frederick RO, Markley JL. Nucleotide-dependent interactions within a specialized Hsp70/Hsp40 complex involved in Fe-S cluster biogenesis. Journal of the American Chemical Society. 136: 11586-9. PMID 25080945 DOI: 10.1021/Ja5055252  0.429
2014 Dai Z, Kim JH, Tonelli M, Ali IK, Markley JL. pH-induced conformational change of IscU at low pH correlates with protonation/deprotonation of two conserved histidine residues. Biochemistry. 53: 5290-7. PMID 25055301 DOI: 10.1021/Bi500313T  0.565
2014 Lee W, Watters KE, Troupis AT, Reinen NM, Suchy FP, Moyer KL, Frederick RO, Tonelli M, Aceti DJ, Palmenberg AC, Markley JL. Solution structure of the 2A protease from a common cold agent, human rhinovirus C2, strain W12. Plos One. 9: e97198. PMID 24937088 DOI: 10.1371/Journal.Pone.0097198  0.494
2014 Kim JH, Bothe JR, Frederick RO, Holder JC, Markley JL. Role of IscX in iron-sulfur cluster biogenesis in Escherichia coli. Journal of the American Chemical Society. 136: 7933-42. PMID 24810328 DOI: 10.1021/Ja501260H  0.389
2014 Whigham LD, Butz DE, Dashti H, Tonelli M, Johnson LK, Cook ME, Porter WP, Eghbalnia HR, Markley JL, Lindheim SR, Schoeller DA, Abbott DH, Assadi-Porter FM. Metabolic Evidence of Diminished Lipid Oxidation in Women With Polycystic Ovary Syndrome. Current Metabolomics. 2: 269-278. PMID 24765590 DOI: 10.2174/2213235X01666131203230512  0.694
2014 Cornilescu CC, Cornilescu G, Burgie ES, Markley JL, Ulijasz AT, Vierstra RD. Dynamic structural changes underpin photoconversion of a blue/green cyanobacteriochrome between its dark and photoactivated states. The Journal of Biological Chemistry. 289: 3055-65. PMID 24337572 DOI: 10.1074/Jbc.M113.531053  0.322
2014 Poplawski A, Hu K, Lee W, Natesan S, Peng D, Carlson S, Shi X, Balaz S, Markley JL, Glass KC. Molecular insights into the recognition of N-terminal histone modifications by the BRPF1 bromodomain. Journal of Molecular Biology. 426: 1661-76. PMID 24333487 DOI: 10.1016/J.Jmb.2013.12.007  0.504
2014 Makino S, Beebe ET, Markley JL, Fox BG. Cell-free protein synthesis for functional and structural studies. Methods in Molecular Biology (Clifton, N.J.). 1091: 161-78. PMID 24203331 DOI: 10.1007/978-1-62703-691-7_11  0.317
2014 Bacot-Davis V, Palmenberg A, Cornilescu C, Markley J. Structural Characterization of the Mengovirus Leader Protein Bound to Ran GTPase by Nuclear Magnetic Resonance Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Mmg/Pdb  0.352
2013 Chae YK, Kim SH, Ellinger JE, Markley JL. Dosage Effects of Salt and pH Stresses on Saccharomyces cerevisiae as Monitored via Metabolites by Using Two Dimensional NMR Spectroscopy. Bulletin of the Korean Chemical Society. 34: 3602-3608. PMID 25642011 DOI: 10.5012/Bkcs.2013.34.12.3602  0.528
2013 Ellinger JJ, Chylla RA, Ulrich EL, Markley JL. Databases and Software for NMR-Based Metabolomics. Current Metabolomics. 1. PMID 24260723 DOI: 10.2174/2213235X11301010028  0.572
2013 Lee W, Hu K, Tonelli M, Bahrami A, Neuhardt E, Glass KC, Markley JL. Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 236: 83-8. PMID 24091140 DOI: 10.1016/J.Jmr.2013.08.010  0.774
2013 Montelione GT, Nilges M, Bax A, Güntert P, Herrmann T, Richardson JS, Schwieters CD, Vranken WF, Vuister GW, Wishart DS, Berman HM, Kleywegt GJ, Markley JL. Recommendations of the wwPDB NMR Validation Task Force. Structure (London, England : 1993). 21: 1563-70. PMID 24010715 DOI: 10.1016/J.Str.2013.07.021  0.386
2013 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. How community has shaped the Protein Data Bank. Structure (London, England : 1993). 21: 1485-91. PMID 24010707 DOI: 10.1016/J.Str.2013.07.010  0.315
2013 Cai K, Frederick RO, Kim JH, Reinen NM, Tonelli M, Markley JL. Human mitochondrial chaperone (mtHSP70) and cysteine desulfurase (NFS1) bind preferentially to the disordered conformation, whereas co-chaperone (HSC20) binds to the structured conformation of the iron-sulfur cluster scaffold protein (ISCU). The Journal of Biological Chemistry. 288: 28755-70. PMID 23940031 DOI: 10.1074/Jbc.M113.482042  0.421
2013 Kim JH, Frederick RO, Reinen NM, Troupis AT, Markley JL. [2Fe-2S]-ferredoxin binds directly to cysteine desulfurase and supplies an electron for iron-sulfur cluster assembly but is displaced by the scaffold protein or bacterial frataxin. Journal of the American Chemical Society. 135: 8117-20. PMID 23682711 DOI: 10.1021/Ja401950A  0.379
2013 Clos LJ, Jofre MF, Ellinger JJ, Westler WM, Markley JL. NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers. Metabolomics : Official Journal of the Metabolomic Society. 9: 558-563. PMID 23678341 DOI: 10.1007/S11306-012-0490-9  0.606
2013 Chylla RA, Van Acker R, Kim H, Azapira A, Mukerjee P, Markley JL, Storme V, Boerjan W, Ralph J. Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and region-of-interest (ROI) segmentation of solution-state 2D 1H-13C NMR spectra. Biotechnology For Biofuels. 6: 45. PMID 23622232 DOI: 10.1186/1754-6834-6-45  0.35
2013 Hsueh KL, Tonelli M, Cai K, Westler WM, Markley JL. Electron transfer mechanism of the Rieske protein from Thermus thermophilus from solution nuclear magnetic resonance investigations. Biochemistry. 52: 2862-73. PMID 23480240 DOI: 10.1021/Bi400296C  0.666
2013 Cornilescu CC, Cornilescu G, Rao H, Porter SF, Tonelli M, DeRider ML, Markley JL, Assadi-Porter FM. Temperature-dependent conformational change affecting Tyr11 and sweetness loops of brazzein. Proteins. 81: 919-25. PMID 23349025 DOI: 10.1002/Prot.24259  0.807
2013 Markley JL, Kim JH, Dai Z, Bothe JR, Cai K, Frederick RO, Tonelli M. Metamorphic protein IscU alternates conformations in the course of its role as the scaffold protein for iron-sulfur cluster biosynthesis and delivery. Febs Letters. 587: 1172-9. PMID 23333622 DOI: 10.1016/J.Febslet.2013.01.003  0.557
2013 Oldfield CJ, Xue B, Van YY, Ulrich EL, Markley JL, Dunker AK, Uversky VN. Utilization of protein intrinsic disorder knowledge in structural proteomics. Biochimica Et Biophysica Acta. 1834: 487-98. PMID 23232152 DOI: 10.1016/J.Bbapap.2012.12.003  0.316
2013 Lee W, Bahrami A, Markley JL. ADAPT-NMR Enhancer: complete package for reduced dimensionality in protein NMR spectroscopy. Bioinformatics (Oxford, England). 29: 515-7. PMID 23220573 DOI: 10.1093/Bioinformatics/Bts692  0.763
2013 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The future of the protein data bank. Biopolymers. 99: 218-22. PMID 23023942 DOI: 10.1002/Bip.22132  0.301
2012 Chae YK, Kim SH, Ellinger JJ, Markley JL. Tracing Metabolite Footsteps of Escherichia coli Along the Time Course of Recombinant Protein Expression by Two-Dimensional NMR Spectroscopy. Bulletin of the Korean Chemical Society. 33: 4041-4046. PMID 23794775 DOI: 10.5012/Bkcs.2012.33.12.4041  0.696
2012 Dai Z, Tonelli M, Markley JL. Metamorphic protein IscU changes conformation by cis-trans isomerizations of two peptidyl-prolyl peptide bonds. Biochemistry. 51: 9595-602. PMID 23110687 DOI: 10.1021/Bi301413Y  0.523
2012 Venkitakrishnan RP, Benard O, Max M, Markley JL, Assadi-Porter FM. Use of NMR saturation transfer difference spectroscopy to study ligand binding to membrane proteins. Methods in Molecular Biology (Clifton, N.J.). 914: 47-63. PMID 22976022 DOI: 10.1007/978-1-62703-023-6_4  0.36
2012 Lee W, Yu W, Kim S, Chang I, Lee W, Markley JL. PACSY, a relational database management system for protein structure and chemical shift analysis. Journal of Biomolecular Nmr. 54: 169-79. PMID 22903636 DOI: 10.1007/S10858-012-9660-3  0.698
2012 Kim JH, Tonelli M, Frederick RO, Chow DC, Markley JL. Specialized Hsp70 chaperone (HscA) binds preferentially to the disordered form, whereas J-protein (HscB) binds preferentially to the structured form of the iron-sulfur cluster scaffold protein (IscU). The Journal of Biological Chemistry. 287: 31406-13. PMID 22782893 DOI: 10.1074/Jbc.M112.352617  0.422
2012 Zhu J, Rao H, Tonelli M, Westler WM, Singarapu KK, Markley JL, DeLuca HF, Assadi-Porter FM. Efficient stable isotope labeling and purification of vitamin D receptor from inclusion bodies. Protein Expression and Purification. 85: 25-31. PMID 22750673 DOI: 10.1016/J.Pep.2012.06.012  0.333
2012 Kim JH, Tonelli M, Kim T, Markley JL. Three-dimensional structure and determinants of stability of the iron-sulfur cluster scaffold protein IscU from Escherichia coli. Biochemistry. 51: 5557-63. PMID 22734684 DOI: 10.1021/Bi300579P  0.437
2012 Chae YK, Tonneli M, Markley JL. Recombinant production, isotope labeling and purification of ENOD40B: a plant peptide hormone. Protein and Peptide Letters. 19: 808-11. PMID 22702897 DOI: 10.2174/092986612801619624  0.53
2012 Kobayashi N, Harano Y, Tochio N, Nakatani E, Kigawa T, Yokoyama S, Mading S, Ulrich EL, Markley JL, Akutsu H, Fujiwara T. An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database. Journal of Biomolecular Nmr. 53: 311-20. PMID 22689068 DOI: 10.1007/S10858-012-9641-6  0.393
2012 Fleischhacker AS, Stubna A, Hsueh KL, Guo Y, Teter SJ, Rose JC, Brunold TC, Markley JL, Münck E, Kiley PJ. Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR. Biochemistry. 51: 4453-62. PMID 22583201 DOI: 10.1021/Bi3003204  0.55
2012 Bahrami A, Tonelli M, Sahu SC, Singarapu KK, Eghbalnia HR, Markley JL. Robust, integrated computational control of NMR experiments to achieve optimal assignment by ADAPT-NMR. Plos One. 7: e33173. PMID 22427982 DOI: 10.1371/Journal.Pone.0033173  0.729
2012 Berman HM, Kleywegt GJ, Nakamura H, Markley JL. The Protein Data Bank at 40: reflecting on the past to prepare for the future. Structure (London, England : 1993). 20: 391-6. PMID 22404998 DOI: 10.1016/J.Str.2012.01.010  0.327
2012 Pal A, Fontanilla D, Gopalakrishnan A, Chae YK, Markley JL, Ruoho AE. The sigma-1 receptor protects against cellular oxidative stress and activates antioxidant response elements. European Journal of Pharmacology. 682: 12-20. PMID 22381068 DOI: 10.1016/J.Ejphar.2012.01.030  0.516
2012 Bahrami A, Clos LJ, Markley JL, Butcher SE, Eghbalnia HR. RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts. Journal of Biomolecular Nmr. 52: 289-302. PMID 22359049 DOI: 10.1007/S10858-012-9603-Z  0.684
2012 Hansen DF, Westler WM, Kunze MB, Markley JL, Weinhold F, Led JJ. Accurate structure and dynamics of the metal-site of paramagnetic metalloproteins from NMR parameters using natural bond orbitals. Journal of the American Chemical Society. 134: 4670-82. PMID 22329704 DOI: 10.1021/Ja209348P  0.58
2012 Ellinger JJ, Miller DC, Lewis IA, Markley JL. Semiautomated device for batch extraction of metabolites from tissue samples. Analytical Chemistry. 84: 1809-12. PMID 22292466 DOI: 10.1021/Ac203390V  0.657
2012 Kim JH, Tonelli M, Markley JL. Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase. Proceedings of the National Academy of Sciences of the United States of America. 109: 454-9. PMID 22203963 DOI: 10.1073/Pnas.1114372109  0.398
2012 Doreleijers JF, Vranken WF, Schulte C, Markley JL, Ulrich EL, Vriend G, Vuister GW. NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB. Nucleic Acids Research. 40: D519-24. PMID 22139937 DOI: 10.1093/Nar/Gkr1134  0.374
2012 Kim JH, Tonelli M, Markley J. The chemical shifts and T1, T2, and 1H-15N NOE data for apo-IscU(N90A) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr18361  0.359
2012 Lee W, Markley JL. PACSY database, a relational database management system for Protein structure and nuclear Magnetic Resonance chemical shift analysis Proceedings - 2012 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2012. 930-932. DOI: 10.1109/BIBMW.2012.6470267  0.467
2012 Berman HM, Henrick K, Kleywegt G, Nakamura H, Markley J. The Worldwide Protein Data Bank International Tables For Crystallography. DOI: 10.1107/97809553602060000896  0.316
2012 Lewis IA, Shortreed MR, Hegeman AD, Markley JL. Novel NMR and MS approaches to metabolomics Methods in Pharmacology and Toxicology. 17: 199-230. DOI: 10.1007/978-1-61779-618-0_7  0.494
2011 Chae YK, Singarapu K, Westler WM, Markley JL. Recombinant Expression, Isotope Labeling and Purification of the Vitamin D Receptor Binding Peptide. Bulletin of the Korean Chemical Society. 32: 4337-4340. PMID 23626398 DOI: 10.5012/Bkcs.2011.32.12.4337  0.557
2011 Singarapu KK, Zhu J, Tonelli M, Rao H, Assadi-Porter FM, Westler WM, DeLuca HF, Markley JL. Ligand-specific structural changes in the vitamin D receptor in solution. Biochemistry. 50: 11025-33. PMID 22112050 DOI: 10.1021/Bi201637P  0.302
2011 Hu K, Ellinger JJ, Chylla RA, Markley JL. Measurement of absolute concentrations of individual compounds in metabolite mixtures by gradient-selective time-zero 1H-13C HSQC with two concentration references and fast maximum likelihood reconstruction analysis. Analytical Chemistry. 83: 9352-60. PMID 22029275 DOI: 10.1021/Ac201948F  0.587
2011 Singarapu KK, Tonelli M, Chow DC, Frederick RO, Westler WM, Markley JL. Structural characterization of Hsp12, the heat shock protein from Saccharomyces cerevisiae, in aqueous solution where it is intrinsically disordered and in detergent micelles where it is locally α-helical. The Journal of Biological Chemistry. 286: 43447-53. PMID 21998307 DOI: 10.1074/Jbc.M111.306464  0.357
2011 Tonelli M, Singarapu KK, Makino S, Sahu SC, Matsubara Y, Endo Y, Kainosho M, Markley JL. Hydrogen exchange during cell-free incorporation of deuterated amino acids and an approach to its inhibition. Journal of Biomolecular Nmr. 51: 467-76. PMID 21984356 DOI: 10.1007/S10858-011-9575-4  0.378
2011 Dittli SM, Rao H, Tonelli M, Quijada J, Markley JL, Max M, Assadi-Porter F, Maillet E. Structural role of the terminal disulfide bond in the sweetness of brazzein. Chemical Senses. 36: 821-30. PMID 21765060 DOI: 10.1093/Chemse/Bjr057  0.379
2011 Chylla RA, Hu K, Ellinger JJ, Markley JL. Deconvolution of two-dimensional NMR spectra by fast maximum likelihood reconstruction: application to quantitative metabolomics. Analytical Chemistry. 83: 4871-80. PMID 21526800 DOI: 10.1021/Ac200536B  0.602
2011 Lee W, Kim JH, Westler WM, Markley JL. PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination. Bioinformatics (Oxford, England). 27: 1727-8. PMID 21511715 DOI: 10.1093/Bioinformatics/Btr200  0.632
2011 Ellinger JJ, Lewis IA, Markley JL. Role of aminotransferases in glutamate metabolism of human erythrocytes. Journal of Biomolecular Nmr. 49: 221-9. PMID 21380856 DOI: 10.1007/S10858-011-9481-9  0.673
2011 Hu K, Westler WM, Markley JL. Two-dimensional concurrent HMQC-COSY as an approach for small molecule chemical shift assignment and compound identification. Journal of Biomolecular Nmr. 49: 291-6. PMID 21373839 DOI: 10.1007/S10858-011-9494-4  0.355
2011 Füzéry AK, Oh JJ, Ta DT, Vickery LE, Markley JL. Three hydrophobic amino acids in Escherichia coli HscB make the greatest contribution to the stability of the HscB-IscU complex. Bmc Biochemistry. 12: 3. PMID 21269500 DOI: 10.1186/1471-2091-12-3  0.727
2011 Hallows WC, Yu W, Smith BC, Devries MK, Devires MK, Ellinger JJ, Someya S, Shortreed MR, Prolla T, Markley JL, Smith LM, Zhao S, Guan KL, Denu JM. Sirt3 promotes the urea cycle and fatty acid oxidation during dietary restriction. Molecular Cell. 41: 139-49. PMID 21255725 DOI: 10.1016/J.Molcel.2011.01.002  0.55
2011 Hu K, Westler WM, Markley JL. Simultaneous quantification and identification of individual chemicals in metabolite mixtures by two-dimensional extrapolated time-zero (1)H-(13)C HSQC (HSQC(0)). Journal of the American Chemical Society. 133: 1662-5. PMID 21247157 DOI: 10.1021/Ja1095304  0.337
2011 Westler WM, Lin IJ, Perczel A, Weinhold F, Markley JL. Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions. Journal of the American Chemical Society. 133: 1310-6. PMID 21207994 DOI: 10.1021/Ja1049059  0.711
2011 Kim JH, Tonelli M, Markley J. Solution Structure of apo-IscU(WT) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2L4X/Pdb  0.363
2010 Neerathilingam M, Markley JL. Auto-induction medium containing glyphosate for high-level incorporation of unusual aromatic amino acids into proteins. Biotechniques. 49: 659-61. PMID 20854268 DOI: 10.2144/000113491  0.335
2010 Qasim MA, Song J, Markley JL, Laskowski M. Cleavage of peptide bonds bearing ionizable amino acids at P(1) by serine proteases with hydrophobic S(1) pocket. Biochemical and Biophysical Research Communications. 400: 507-10. PMID 20800580 DOI: 10.1016/J.Bbrc.2010.08.078  0.611
2010 Hsueh KL, Westler WM, Markley JL. NMR investigations of the Rieske protein from Thermus thermophilus support a coupled proton and electron transfer mechanism. Journal of the American Chemical Society. 132: 7908-18. PMID 20496909 DOI: 10.1021/Ja1026387  0.643
2010 Lewis IA, Karsten RH, Norton ME, Tonelli M, Westler WM, Markley JL. NMR method for measuring carbon-13 isotopic enrichment of metabolites in complex solutions. Analytical Chemistry. 82: 4558-63. PMID 20459129 DOI: 10.1021/Ac100565B  0.613
2010 Singarapu KK, Radek JT, Tonelli M, Markley JL, Lan Q. Differences in the structure and dynamics of the apo- and palmitate-ligated forms of Aedes aegypti sterol carrier protein 2 (AeSCP-2). The Journal of Biological Chemistry. 285: 17046-53. PMID 20356842 DOI: 10.1074/Jbc.M110.101154  0.39
2010 Assadi-Porter FM, Maillet EL, Radek JT, Quijada J, Markley JL, Max M. Key amino acid residues involved in multi-point binding interactions between brazzein, a sweet protein, and the T1R2-T1R3 human sweet receptor. Journal of Molecular Biology. 398: 584-99. PMID 20302879 DOI: 10.1016/J.Jmb.2010.03.017  0.308
2010 Makino S, Goren MA, Fox BG, Markley JL. Cell-free protein synthesis technology in NMR high-throughput structure determination. Methods in Molecular Biology (Clifton, N.J.). 607: 127-47. PMID 20204854 DOI: 10.1007/978-1-60327-331-2_12  0.354
2010 Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. Safeguarding the integrity of protein archive. Nature. 463: 425. PMID 20110969 DOI: 10.1038/463425C  0.31
2010 Ulijasz AT, Cornilescu G, Cornilescu CC, Zhang J, Rivera M, Markley JL, Vierstra RD. Structural basis for the photoconversion of a phytochrome to the activated Pfr form. Nature. 463: 250-4. PMID 20075921 DOI: 10.1038/Nature08671  0.323
2010 Zornetzer GA, Tanem J, Fox BG, Markley JL. The length of the bound fatty acid influences the dynamics of the acyl carrier protein and the stability of the thioester bond. Biochemistry. 49: 470-7. PMID 20014832 DOI: 10.1021/Bi9014659  0.793
2010 Goodfellow BJ, Duarte IC, Macedo AL, Volkman BF, Nunes SG, Moura I, Markley JL, Moura JJ. An NMR structural study of nickel-substituted rubredoxin. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 15: 409-20. PMID 19997764 DOI: 10.1007/S00775-009-0613-6  0.38
2010 Assadi-Porter FM, Tonelli M, Maillet EL, Markley JL, Max M. Interactions between the human sweet-sensing T1R2-T1R3 receptor and sweeteners detected by saturation transfer difference NMR spectroscopy. Biochimica Et Biophysica Acta. 1798: 82-6. PMID 19664591 DOI: 10.1016/J.Bbamem.2009.07.021  0.302
2010 Virudachalam R, Markley JL. Nuclear magnetic resonance studies of spherical plant viruses. Biophysical Journal. 49: 33-5. PMID 19431638 DOI: 10.1016/S0006-3495(86)83582-2  0.315
2010 McCain DC, Selig TC, Markley JL. Some plant leaves have orientation-dependent EPR and NMR spectra. Proceedings of the National Academy of Sciences of the United States of America. 81: 748-52. PMID 16593413 DOI: 10.1073/Pnas.81.3.748  0.33
2010 Singarapu KK, Radek J, Tonelli M, Lan Q, Markley J. Solution NMR structure of Sterol Carrier Protein - 2 from Aedes aegypti (AeSCP-2) complex with C16 fatty acid (palmitate) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Ksi/Pdb  0.355
2010 Phillips GN, Primm J, Aceti D, Bingman CA, Frederick R, Makino S, Peterson F, Vojtik F, Wrobel R, Zolnai Z, Volkman B, Fox BG, Markley JL. Technology Development Highlights Generated from the Center for Eukaryotic Structural Genomics Biophysical Journal. 98: 250a-251a. DOI: 10.1016/J.Bpj.2009.12.1362  0.344
2009 Lewis IA, Campanella ME, Markley JL, Low PS. Role of band 3 in regulating metabolic flux of red blood cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 18515-20. PMID 19846781 DOI: 10.1073/Pnas.0905999106  0.537
2009 Lewis IA, Schommer SC, Markley JL. rNMR: open source software for identifying and quantifying metabolites in NMR spectra. Magnetic Resonance in Chemistry : Mrc. 47: S123-6. PMID 19821464 DOI: 10.1002/Mrc.2526  0.611
2009 Doreleijers JF, Vranken WF, Schulte C, Lin J, Wedell JR, Penkett CJ, Vuister GW, Vriend G, Markley JL, Ulrich EL. The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries. Journal of Biomolecular Nmr. 45: 389-96. PMID 19809795 DOI: 10.1007/S10858-009-9378-Z  0.368
2009 Lin IJ, Xia B, King DS, Machonkin TE, Westler WM, Markley JL. Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification. Journal of the American Chemical Society. 131: 15555-63. PMID 19799419 DOI: 10.1021/Ja905928X  0.706
2009 Tonelli M, Masterson LR, Cornilescu G, Markley JL, Veglia G. One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements. Journal of the American Chemical Society. 131: 14138-9. PMID 19764746 DOI: 10.1021/Ja904766G  0.34
2009 Lee W, Westler WM, Bahrami A, Eghbalnia HR, Markley JL. PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy. Bioinformatics (Oxford, England). 25: 2085-7. PMID 19497931 DOI: 10.1093/Bioinformatics/Btp345  0.751
2009 Kim JH, Füzéry AK, Tonelli M, Ta DT, Westler WM, Vickery LE, Markley JL. Structure and dynamics of the iron-sulfur cluster assembly scaffold protein IscU and its interaction with the cochaperone HscB. Biochemistry. 48: 6062-71. PMID 19492851 DOI: 10.1021/Bi9002277  0.765
2009 Wang L, Markley JL. Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing. Journal of Biomolecular Nmr. 44: 95-9. PMID 19436955 DOI: 10.1007/S10858-009-9324-0  0.591
2009 Montelione GT, Arrowsmith C, Girvin ME, Kennedy MA, Markley JL, Powers R, Prestegard JH, Szyperski T. Unique opportunities for NMR methods in structural genomics. Journal of Structural and Functional Genomics. 10: 101-6. PMID 19288278 DOI: 10.1007/S10969-009-9064-0  0.389
2009 Bahrami A, Assadi AH, Markley JL, Eghbalnia HR. Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy. Plos Computational Biology. 5: e1000307. PMID 19282963 DOI: 10.1371/Journal.Pcbi.1000307  0.739
2009 Markley JL, Aceti DJ, Bingman CA, Fox BG, Frederick RO, Makino S, Nichols KW, Phillips GN, Primm JG, Sahu SC, Vojtik FC, Volkman BF, Wrobel RL, Zolnai Z. The Center for Eukaryotic Structural Genomics. Journal of Structural and Functional Genomics. 10: 165-79. PMID 19130299 DOI: 10.1007/S10969-008-9057-4  0.355
2009 Sahu SC, Singh S, Tonelli M, Markley JL. Solution structure of At3g03773.1 protein from Arabidopsis thaliana Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Kmw/Pdb  0.329
2009 Nunes S, Volkman B, Moura J, Moura I, Macedo A, Markley J, Duarte I. NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb2Kkd/Pdb  0.348
2009 Kim JH, Fuzery A, Marco T, William W, Markley J. Structural characterization of IscU and its interaction with HscB Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr7432  0.719
2008 Takeda M, Sugimori N, Torizawa T, Terauchi T, Ono AM, Yagi H, Yamaguchi Y, Kato K, Ikeya T, Jee J, Güntert P, Aceti DJ, Markley JL, Kainosho M. Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR. The Febs Journal. 275: 5873-84. PMID 19021763 DOI: 10.1111/J.1742-4658.2008.06717.X  0.431
2008 Song J, McGivern JV, Nichols KW, Markley JL, Sheets MD. Structural basis for RNA recognition by a type II poly(A)-binding protein. Proceedings of the National Academy of Sciences of the United States of America. 105: 15317-22. PMID 18824697 DOI: 10.1073/Pnas.0801274105  0.616
2008 Cornilescu G, Ulijasz AT, Cornilescu CC, Markley JL, Vierstra RD. Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. Journal of Molecular Biology. 383: 403-13. PMID 18762196 DOI: 10.1016/J.Jmb.2008.08.034  0.365
2008 Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN. Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain. The Journal of Biological Chemistry. 283: 30184-92. PMID 18713742 DOI: 10.1074/Jbc.M804746200  0.338
2008 Füzéry AK, Tonelli M, Ta DT, Cornilescu G, Vickery LE, Markley JL. Solution structure of the iron-sulfur cluster cochaperone HscB and its binding surface for the iron-sulfur assembly scaffold protein IscU. Biochemistry. 47: 9394-404. PMID 18702525 DOI: 10.1021/Bi800502R  0.742
2008 Virudachalam R, Sitaramant K, Heusst KL, Argost P, Markley JL. Carbon-13 and proton nuclear magnetic resonance spectroscopy of plant viruses: evidence for protein-nucleic acid interactions in belladonna mottle virus and detection of polyamines in turnip yellow mosaic virus. Virology. 130: 360-71. PMID 18639152 DOI: 10.1016/0042-6822(83)90090-9  0.388
2008 McCain DC, Virudachalam R, Markley JL, Abdel-Meguid SS, Rossmann MG. Carbon-13 NMR study of southern bean mosaic virus. Virology. 117: 501-3. PMID 18635125 DOI: 10.1016/0042-6822(82)90489-5  0.353
2008 Masterson LR, Tonelli M, Markley JL, Veglia G. Simultaneous detection and deconvolution of congested NMR spectra containing three isotopically labeled species. Journal of the American Chemical Society. 130: 7818-9. PMID 18512910 DOI: 10.1021/Ja802701W  0.331
2008 Aceti DJ, Bitto E, Yakunin AF, Proudfoot M, Bingman CA, Frederick RO, Sreenath HK, Vojtik FC, Wrobel RL, Fox BG, Markley JL, Phillips GN. Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000. Proteins. 73: 241-53. PMID 18433060 DOI: 10.1002/Prot.22041  0.348
2008 Juranić N, Dannenberg JJ, Cornilescu G, Salvador P, Atanasova E, Ahn HC, Macura S, Markley JL, Prendergast FG. Structural dependencies of protein backbone 2JNC' couplings. Protein Science : a Publication of the Protein Society. 17: 768-76. PMID 18305196 DOI: 10.1110/Ps.073331608  0.383
2008 Cornilescu CC, Porter FW, Zhao KQ, Palmenberg AC, Markley JL. NMR structure of the mengovirus Leader protein zinc-finger domain. Febs Letters. 582: 896-900. PMID 18291103 DOI: 10.1016/J.Febslet.2008.02.023  0.405
2008 Markley JL, Ulrich EL, Berman HM, Henrick K, Nakamura H, Akutsu H. BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): New policies affecting biomolecular NMR depositions Journal of Biomolecular Nmr. 40: 153-155. PMID 18288446 DOI: 10.1007/S10858-008-9221-Y  0.406
2008 Song J, Bettendorff L, Tonelli M, Markley JL. Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase. The Journal of Biological Chemistry. 283: 10939-48. PMID 18276586 DOI: 10.1074/Jbc.M709675200  0.645
2008 Cui Q, Lewis IA, Hegeman AD, Anderson ME, Li J, Schulte CF, Westler WM, Eghbalnia HR, Sussman MR, Markley JL. Metabolite identification via the Madison Metabolomics Consortium Database. Nature Biotechnology. 26: 162-4. PMID 18259166 DOI: 10.1038/Nbt0208-162  0.515
2008 Song J, Guo LW, Muradov H, Artemyev NO, Ruoho AE, Markley JL. Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure. Proceedings of the National Academy of Sciences of the United States of America. 105: 1505-10. PMID 18230733 DOI: 10.1073/Pnas.0709558105  0.627
2008 Assadi-Porter FM, Patry S, Markley JL. Efficient and rapid protein expression and purification of small high disulfide containing sweet protein brazzein in E. coli. Protein Expression and Purification. 58: 263-8. PMID 18221889 DOI: 10.1016/J.Pep.2007.11.009  0.357
2008 Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, et al. Remediation of the protein data bank archive. Nucleic Acids Research. 36: D426-33. PMID 18073189 DOI: 10.1093/Nar/Gkm937  0.339
2008 Ulrich EL, Akutsu H, Doreleijers JF, Harano Y, Ioannidis YE, Lin J, Livny M, Mading S, Maziuk D, Miller Z, Nakatani E, Schulte CF, Tolmie DE, Kent Wenger R, Yao H, ... Markley JL, et al. BioMagResBank. Nucleic Acids Research. 36: D402-8. PMID 17984079 DOI: 10.1093/nar/gkm957  0.318
2008 Fuezery A, Tonelli M, Ta D, Cornilescu G, Vickery L, Markley J. NMR study of the interaction of HscB with apo-IscU Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15541  0.313
2007 Pan X, Wesenberg GE, Markley JL, Fox BG, Phillips GN, Bingman CA. A graphical approach to tracking and reporting target status in structural genomics. Journal of Structural and Functional Genomics. 8: 209-16. PMID 18236171 DOI: 10.1007/S10969-007-9037-0  0.303
2007 Markley JL, Anderson ME, Cui Q, Eghbalnia HR, Lewis IA, Hegeman AD, Li J, Schulte CF, Sussman MR, Westler WM, Ulrich EL, Zolnai Z. New bioinformatics resources for metabolomics. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 157-68. PMID 17990489  0.526
2007 Lewis IA, Schommer SC, Hodis B, Robb KA, Tonelli M, Westler WM, Sussman MR, Markley JL. Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra. Analytical Chemistry. 79: 9385-90. PMID 17985927 DOI: 10.1021/Ac071583Z  0.609
2007 Frederick RO, Bergeman L, Blommel PG, Bailey LJ, McCoy JG, Song J, Meske L, Bingman CA, Riters M, Dillon NA, Kunert J, Yoon JW, Lim A, Cassidy M, Bunge J, ... ... Markley JL, et al. Small-scale, semi-automated purification of eukaryotic proteins for structure determination. Journal of Structural and Functional Genomics. 8: 153-66. PMID 17985212 DOI: 10.1007/S10969-007-9032-5  0.642
2007 Cornilescu G, Hadley EB, Woll MG, Markley JL, Gellman SH, Cornilescu CC. Solution structure of a small protein containing a fluorinated side chain in the core. Protein Science : a Publication of the Protein Society. 16: 2089. PMID 17915350 DOI: 10.1110/Ps.062557707  0.355
2007 Wang L, Eghbalnia HR, Markley JL. Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins. Journal of Biomolecular Nmr. 39: 247-57. PMID 17899393 DOI: 10.1007/S10858-007-9193-3  0.577
2007 Tonelli M, Masterson LR, Hallenga K, Veglia G, Markley JL. Carbonyl carbon label selective (CCLS) 1H-15N HSQC experiment for improved detection of backbone 13C-15N cross peaks in larger proteins. Journal of Biomolecular Nmr. 39: 177-85. PMID 17828465 DOI: 10.1007/S10858-007-9185-3  0.389
2007 Phillips GN, Fox BG, Markley JL, Volkman BF, Bae E, Bitto E, Bingman CA, Frederick RO, McCoy JG, Lytle BL, Pierce BS, Song J, Twigger SN. Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics. Journal of Structural and Functional Genomics. 8: 73-84. PMID 17786587 DOI: 10.1007/S10969-007-9023-6  0.637
2007 Hegeman AD, Schulte CF, Cui Q, Lewis IA, Huttlin EL, Eghbalnia H, Harms AC, Ulrich EL, Markley JL, Sussman MR. Stable isotope assisted assignment of elemental compositions for metabolomics. Analytical Chemistry. 79: 6912-21. PMID 17708672 DOI: 10.1021/Ac070346T  0.565
2007 Markley JL. NMR analysis goes nano. Nature Biotechnology. 25: 750-1. PMID 17621301 DOI: 10.1038/Nbt0707-750  0.358
2007 Cornilescu G, Bahrami A, Tonelli M, Markley JL, Eghbalnia HR. HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections. Journal of Biomolecular Nmr. 38: 341-51. PMID 17610130 DOI: 10.1007/S10858-007-9173-7  0.704
2007 Song J, Zhao KQ, Newman CL, Vinarov DA, Markley JL. Solution structure of human sorting nexin 22. Protein Science : a Publication of the Protein Society. 16: 807-14. PMID 17400918 DOI: 10.1110/Ps.072752407  0.637
2007 Song J, Markley JL. Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with a functional partner. Protein and Peptide Letters. 14: 265-8. PMID 17346231 DOI: 10.2174/092986607780090801  0.608
2007 Song J, Markley JL. Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold. Journal of Molecular Biology. 366: 155-64. PMID 17166513 DOI: 10.1016/J.Jmb.2006.11.024  0.627
2007 Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucleic Acids Research. 35: D301-3. PMID 17142228 DOI: 10.1093/Nar/Gkl971  0.334
2007 Guo LW, Assadi-Porter FM, Grant JE, Wu H, Markley JL, Ruoho AE. One-step purification of bacterially expressed recombinant transducin alpha-subunit and isotopically labeled PDE6 gamma-subunit for NMR analysis. Protein Expression and Purification. 51: 187-97. PMID 16938469 DOI: 10.1016/J.Pep.2006.07.012  0.304
2007 Song J, Vinarov D, Tyler E, Shahan M, Newman CL, Tyler R, Lee M, Markley J. Chemical shift Assignment for mouse Roadblock/LC7 domain BC029172 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6396  0.606
2007 Song J, Guo L, Ruoho A, Markley J. The chemical shift assignment of gamma subunit of phosphodiesterase Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15430  0.605
2006 Vinarov DA, Newman CL, Tyler EM, Markley JL, Shahan MN. Wheat germ cell-free expression system for protein production. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 5.18. PMID 18429309 DOI: 10.1002/0471140864.Ps0518S44  0.328
2006 Song J, Lee MS, Carlberg I, Vener AV, Markley JL. Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications. Biochemistry. 45: 15633-43. PMID 17176085 DOI: 10.1021/Bi062148M  0.657
2006 Singh S, Hager MH, Zhang C, Griffith BR, Lee MS, Hallenga K, Markley JL, Thorson JS. Structural insight into the self-sacrifice mechanism of enediyne resistance. Acs Chemical Biology. 1: 451-60. PMID 17168523 DOI: 10.1021/Cb6002898  0.314
2006 Tyler RC, Bitto E, Berndsen CE, Bingman CA, Singh S, Lee MS, Wesenberg GE, Denu JM, Phillips GN, Markley JL. Structure of Arabidopsis thaliana At1g77540 protein, a minimal acetyltransferase from the COG2388 family. Biochemistry. 45: 14325-36. PMID 17128971 DOI: 10.1021/Bi0612059  0.408
2006 Cornilescu G, Vinarov DA, Tyler EM, Markley JL, Cornilescu CC. Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana. Protein Science : a Publication of the Protein Society. 15: 2836-41. PMID 17088324 DOI: 10.1110/Ps.062395206  0.361
2006 Ahn HC, Le YT, Nagchowdhuri PS, Derose EF, Putnam-Evans C, London RE, Markley JL, Lim KH. NMR characterizations of an amyloidogenic conformational ensemble of the PI3K SH3 domain. Protein Science : a Publication of the Protein Society. 15: 2552-7. PMID 17001038 DOI: 10.1110/Ps.062154306  0.381
2006 Vinarov DA, Loushin Newman CL, Markley JL. Wheat germ cell-free platform for eukaryotic protein production. The Febs Journal. 273: 4160-9. PMID 16930128 DOI: 10.1111/J.1742-4658.2006.05434.X  0.362
2006 Lin IJ, Chen Y, Fee JA, Song J, Westler WM, Markley JL. Rieske protein from Thermus thermophilus: 15N NMR titration study demonstrates the role of iron-ligated histidines in the pH dependence of the reduction potential. Journal of the American Chemical Society. 128: 10672-3. PMID 16910649 DOI: 10.1021/Ja0627388  0.731
2006 Wang L, Eghbalnia HR, Markley JL. Probabilistic approach to determining unbiased random-coil carbon-13 chemical shift values from the protein chemical shift database. Journal of Biomolecular Nmr. 35: 155-65. PMID 16799859 DOI: 10.1007/S10858-006-9022-0  0.553
2006 Lytle BL, Peterson FC, Tyler EM, Newman CL, Vinarov DA, Markley JL, Volkman BF. Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 62: 490-3. PMID 16754964 DOI: 10.1107/S1744309106015946  0.384
2006 Zornetzer GA, Fox BG, Markley JL. Solution structures of spinach acyl carrier protein with decanoate and stearate. Biochemistry. 45: 5217-27. PMID 16618110 DOI: 10.1021/Bi052062D  0.798
2006 Ahn HC, Juranić N, Macura S, Markley JL. Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface. Journal of the American Chemical Society. 128: 4398-404. PMID 16569017 DOI: 10.1021/Ja057773D  0.395
2006 Dmitriev O, Tsivkovskii R, Abildgaard F, Morgan CT, Markley JL, Lutsenko S. Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations. Proceedings of the National Academy of Sciences of the United States of America. 103: 5302-7. PMID 16567646 DOI: 10.1073/Pnas.0507416103  0.329
2006 Cui Q, Thorgersen MP, Westler WM, Markley JL, Downs DM. Solution structure of YggX: a prokaryotic protein involved in Fe(II) trafficking. Proteins. 62: 578-86. PMID 16329120 DOI: 10.1002/Prot.20781  0.396
2006 Zornetzer GA, White RD, Markley JL, Fox BG. Preparation of isotopically labeled spinach acyl-acyl carrier protein for NMR structural studies. Protein Expression and Purification. 46: 446-55. PMID 16325425 DOI: 10.1016/J.Pep.2005.10.015  0.81
2006 Tyler R, Song J, Markley J. Dr13312 chemical shift data Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr7084  0.606
2006 Song J, Tyler R, Newman CL, Vinarov D, Markley J. Chemical Shift Assignment of human allograft inflammatory factor I Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6980  0.586
2006 Ahn H, Markley J. 1H, 13C, and 15N Chemical shift Assignments for crambin in DPC micelles Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6504  0.34
2006 Song J, Markley J. NMR structure of the mouse thiamine triphosphatase Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr15063  0.649
2005 Bitto E, Bingman CA, Allard ST, Wesenberg GE, Aceti DJ, Wrobel RL, Frederick RO, Sreenath H, Vojtik FC, Jeon WB, Newman CS, Primm J, Sussman MR, Fox BG, Markley JL, et al. The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 469-72. PMID 16511070 DOI: 10.1107/S1744309105011565  0.323
2005 Song J, Tyler RC, Lee MS, Tyler EM, Markley JL. Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex. Journal of Molecular Biology. 354: 1043-51. PMID 16289575 DOI: 10.1016/J.Jmb.2005.10.017  0.645
2005 Chae YK, Lee K, Markley JL. 1H, 15N and 13C resonance assignments of a protein involved in the autophagy process, At4g21980.1 from Arabidopsis thaliana. Journal of Biomolecular Nmr. 32: 337. PMID 16211491 DOI: 10.1007/S10858-005-0058-3  0.58
2005 Song J, Zhao Q, Lee MS, Markley JL. 1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana. Journal of Biomolecular Nmr. 32: 335. PMID 16211487 DOI: 10.1007/S10858-005-8205-4  0.692
2005 Lin IJ, Gebel EB, Machonkin TE, Westler WM, Markley JL. Changes in hydrogen-bond strengths explain reduction potentials in 10 rubredoxin variants. Proceedings of the National Academy of Sciences of the United States of America. 102: 14581-6. PMID 16199518 DOI: 10.1073/Pnas.0505521102  0.59
2005 Blad H, Reiter NJ, Abildgaard F, Markley JL, Butcher SE. Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR. Journal of Molecular Biology. 353: 540-55. PMID 16181635 DOI: 10.1016/J.Jmb.2005.08.030  0.794
2005 Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL. Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein. Protein Science : a Publication of the Protein Society. 14: 2601-9. PMID 16155204 DOI: 10.1110/Ps.051579205  0.352
2005 Eghbalnia HR, Bahrami A, Tonelli M, Hallenga K, Markley JL. High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection. Journal of the American Chemical Society. 127: 12528-36. PMID 16144400 DOI: 10.1021/Ja052120I  0.71
2005 Eghbalnia HR, Bahrami A, Wang L, Assadi A, Markley JL. Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO). Journal of Biomolecular Nmr. 32: 219-33. PMID 16132822 DOI: 10.1007/S10858-005-7944-6  0.764
2005 Uchida K, Markley JL, Kainosho M. Carbon-13 NMR method for the detection of correlated hydrogen exchange at adjacent backbone peptide amides and its application to hydrogen exchange in five antiparallel beta strands within the hydrophobic core of Streptomyces subtilisin inhibitor (SSI). Biochemistry. 44: 11811-20. PMID 16128582 DOI: 10.1021/Bi050467S  0.392
2005 Zhao Q, Song J, Jin Z, Danilova V, Hellekant G, Markley JL. Probing the sweet determinants of brazzein: wild-type brazzein and a tasteless variant, brazzein-ins(R18a-I18b), exhibit different pH-dependent NMR chemical shifts. Biochemical and Biophysical Research Communications. 335: 256-63. PMID 16105551 DOI: 10.1016/J.Bbrc.2005.07.049  0.721
2005 Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, ... ... Markley JL, et al. X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1. Proteins. 61: 206-8. PMID 16080145 DOI: 10.1002/Prot.20533  0.65
2005 Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL. Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1. Protein Science : a Publication of the Protein Society. 14: 2095-102. PMID 16046629 DOI: 10.1110/Ps.051577605  0.717
2005 Eghbalnia HR, Wang L, Bahrami A, Assadi A, Markley JL. Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements. Journal of Biomolecular Nmr. 32: 71-81. PMID 16041485 DOI: 10.1007/S10858-005-5705-1  0.769
2005 Wang L, Eghbalnia HR, Bahrami A, Markley JL. Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications. Journal of Biomolecular Nmr. 32: 13-22. PMID 16041479 DOI: 10.1007/S10858-005-1717-0  0.758
2005 Doreleijers JF, Nederveen AJ, Vranken W, Lin J, Bonvin AM, Kaptein R, Markley JL, Ulrich EL. BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures. Journal of Biomolecular Nmr. 32: 1-12. PMID 16041478 DOI: 10.1007/S10858-005-2195-0  0.362
2005 Peterson FC, Lytle BL, Sampath S, Vinarov D, Tyler E, Shahan M, Markley JL, Volkman BF. Solution structure of thioredoxin h1 from Arabidopsis thaliana. Protein Science : a Publication of the Protein Society. 14: 2195-200. PMID 15987893 DOI: 10.1110/Ps.051477905  0.403
2005 Vinarov DA, Markley JL. High-throughput automated platform for nuclear magnetic resonance-based structural proteomics. Expert Review of Proteomics. 2: 49-55. PMID 15966852 DOI: 10.1586/14789450.2.1.49  0.337
2005 Machonkin TE, Westler WM, Markley JL. Paramagnetic NMR spectroscopy and density functional calculations in the analysis of the geometric and electronic structures of iron-sulfur proteins. Inorganic Chemistry. 44: 779-97. PMID 15859246 DOI: 10.1021/Ic048624J  0.412
2005 Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CA, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AM. RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank. Proteins. 59: 662-72. PMID 15822098 DOI: 10.1002/Prot.20408  0.408
2005 Vranken WF, Boucher W, Stevens TJ, Fogh RH, Pajon A, Llinas M, Ulrich EL, Markley JL, Ionides J, Laue ED. The CCPN data model for NMR spectroscopy: development of a software pipeline. Proteins. 59: 687-96. PMID 15815974 DOI: 10.1002/Prot.20449  0.671
2005 Oldfield CJ, Ulrich EL, Cheng Y, Dunker AK, Markley JL. Addressing the intrinsic disorder bottleneck in structural proteomics. Proteins. 59: 444-53. PMID 15789434 DOI: 10.1002/Prot.20446  0.336
2005 Tyler RC, Aceti DJ, Bingman CA, Cornilescu CC, Fox BG, Frederick RO, Jeon WB, Lee MS, Newman CS, Peterson FC, Phillips GN, Shahan MN, Singh S, Song J, Sreenath HK, ... ... Markley JL, et al. Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies. Proteins. 59: 633-43. PMID 15789406 DOI: 10.1002/Prot.20436  0.711
2005 Tyler RC, Sreenath HK, Singh S, Aceti DJ, Bingman CA, Markley JL, Fox BG. Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination. Protein Expression and Purification. 40: 268-78. PMID 15766868 DOI: 10.1016/J.Pep.2004.12.024  0.352
2005 Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, ... ... Markley JL, et al. Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. Proceedings of the National Academy of Sciences of the United States of America. 102: 4453-8. PMID 15755812 DOI: 10.1073/Pnas.0408203102  0.432
2005 Song J, Tyler RC, Wrobel RL, Frederick RO, Vojtek FC, Jeon WB, Lee MS, Markley JL. Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein. Protein Science : a Publication of the Protein Society. 14: 1059-63. PMID 15741346 DOI: 10.1110/Ps.041246805  0.648
2005 Assadi-Porter FM, Abildgaard F, Blad H, Cornilescu CC, Markley JL. Brazzein, a small, sweet protein: effects of mutations on its structure, dynamics and functional properties. Chemical Senses. 30: i90-1. PMID 15738211 DOI: 10.1093/Chemse/Bjh128  0.788
2005 Song J, Carlberg I, Lee M, Markley J. Chemical Shift Assignments of Thylakoid Soluble Phosphoprotein of 9 kDa Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6926  0.63
2005 Song J, Markley J. chemical shift assignments of the human sorting nexin 22 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6866  0.602
2005 Song J, Markley J. Chemical shift assignments of the human ortholog of tRNA endonuclease subunt SEN15 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6860  0.604
2005 song j, Zhao Q, Jeon WB, Markley J. Resonance assignment of the At1g24000.1 protein from Arabidopsis Thaliana Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6585  0.691
2005 Zhao Q, Cornilescu C, Lee M, Markley J. Assignments of At5g01610, an Arabidopsis thaliana protein containign DUF583 domain Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6443  0.478
2004 Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL. Cell-free protein production and labeling protocol for NMR-based structural proteomics. Nature Methods. 1: 149-53. PMID 15782178 DOI: 10.1038/Nmeth716  0.378
2004 Sugimori N, Torizawa T, Aceti DJ, Thao S, Markley JL, Kainosho M. (1)H, (13)C and (15)N backbone assignment of a 32 kDa hypothetical protein from Arabidopsis thaliana, At3g16450.1. Journal of Biomolecular Nmr. 30: 357-8. PMID 15756462 DOI: 10.1007/S10858-005-2324-9  0.358
2004 Song J, Vinarov D, Tyler EM, Shahan MN, Tyler RC, Markley JL. Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold. Journal of Biomolecular Nmr. 30: 215-8. PMID 15702529 DOI: 10.2210/Pdb1T0G/Pdb  0.604
2004 Song J, Zhao Q, Thao S, Frederick RO, Markley JL. Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana. Journal of Biomolecular Nmr. 30: 451-6. PMID 15630565 DOI: 10.13018/Bmr6209  0.655
2004 Skjeldal L, Peterson FC, Doreleijers JF, Moe LA, Pikus JD, Westler WM, Markley JL, Volkman BF, Fox BG. Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex. Journal of Biological Inorganic Chemistry : Jbic : a Publication of the Society of Biological Inorganic Chemistry. 9: 945-53. PMID 15452777 DOI: 10.1007/S00775-004-0594-4  0.448
2004 Park IY, Eidsness MK, Lin IJ, Gebel EB, Youn B, Harley JL, Machonkin TE, Frederick RO, Markley JL, Smith ET, Ichiye T, Kang C. Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: effects of side-chain size on reduction potential. Proteins. 57: 618-25. PMID 15382226 DOI: 10.1002/Prot.20243  0.615
2004 Lytle BL, Peterson FC, Qiu SH, Luo M, Zhao Q, Markley JL, Volkman BF. Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B. The Journal of Biological Chemistry. 279: 46787-93. PMID 15364906 DOI: 10.1074/Jbc.M409422200  0.513
2004 Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman A, Sussman MR, Markley JL, et al. Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana. Proteins. 57: 218-20. PMID 15326607 DOI: 10.1002/Prot.20215  0.463
2004 Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath H, Fox BG, Volkman BF, Jeon WB, Newman CS, Ulrich EL, Hegeman AD, ... ... Markley JL, et al. Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana. Proteins. 57: 854-7. PMID 15317023 DOI: 10.1002/Prot.20258  0.437
2004 Zhao Q, Frederick R, Seder K, Thao S, Sreenath H, Peterson F, Volkman BF, Markley JL, Fox BG. Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N. Journal of Structural and Functional Genomics. 5: 87-93. PMID 15263847 DOI: 10.1023/B:Jsfg.0000029205.65813.42  0.55
2004 Dmitriev OY, Abildgaard F, Markley JL, Fillingame RH. Backbone 1H, 15N and 13C assignments for the subunit a of the E. coli ATP synthase. Journal of Biomolecular Nmr. 29: 439-40. PMID 15213458 DOI: 10.1023/B:Jnmr.0000032519.14221.20  0.372
2004 Cornilescu G, Cornilescu CC, Zhao Q, Frederick RO, Peterson FC, Thao S, Markley JL. Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thaliana. Journal of Biomolecular Nmr. 29: 387-90. PMID 15213437 DOI: 10.1023/B:Jnmr.0000032525.70677.16  0.48
2004 Machonkin TE, Westler WM, Markley JL. Strategy for the study of paramagnetic proteins with slow electronic relaxation rates by nmr spectroscopy: application to oxidized human [2Fe-2S] ferredoxin. Journal of the American Chemical Society. 126: 5413-26. PMID 15113213 DOI: 10.1021/Ja037077I  0.414
2004 Chae YK, Im H, Zhao Q, Doelling JH, Vierstra RD, Markley JL. Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination. Protein Expression and Purification. 34: 280-3. PMID 15003262 DOI: 10.1016/J.Pep.2003.11.007  0.674
2004 Doreleijers JF, Mading S, Maziuk D, Sojourner K, Yin L, Zhu J, Markley JL, Ulrich EL. BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank. Journal of Biomolecular Nmr. 26: 139-46. PMID 12766409 DOI: 10.1023/A:1023514106644  0.362
2004 Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL. Solution Structure of Ubiquitin like protein from Mus musculus Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb1Xo3/Pdb  0.328
2004 Lytle B, Peterson F, Volkman B, Markley J. Structure of At3g01050.1, a ubiquitin-fold protein from Arabidopsis thaliana Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.2210/Pdb1Se9/Pdb  0.356
2004 Cornilescu C, Cornilescu G, Singh S, Lee M, Tyler E, Shahan M, Vinarov D, Markley J. Solution structure of At5g66040, a putative protein from Arabidopsis Thaliana Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr6240  0.332
2003 Wu WJ, Vidugiris G, Mooberry ES, Westler WM, Markley JL. Mixing apparatus for preparing NMR samples under pressure. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 164: 84-91. PMID 12932460 DOI: 10.1016/S1090-7807(03)00144-7  0.313
2003 Jin Z, Danilova V, Assadi-Porter FM, Aceti DJ, Markley JL, Hellekant G. Critical regions for the sweetness of brazzein. Febs Letters. 544: 33-7. PMID 12782286 DOI: 10.1016/S0014-5793(03)00383-1  0.319
2003 Song J, Laskowski M, Qasim MA, Markley JL. Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. Biochemistry. 42: 6380-91. PMID 12767219 DOI: 10.1021/Bi034053F  0.633
2003 Assadi-Porter FM, Abildgaard F, Blad H, Markley JL. Correlation of the sweetness of variants of the protein brazzein with patterns of hydrogen bonds detected by NMR spectroscopy. The Journal of Biological Chemistry. 278: 31331-9. PMID 12732626 DOI: 10.1074/Jbc.M302663200  0.791
2003 Song J, Markley JL. Protein inhibitors of serine proteinases: role of backbone structure and dynamics in controlling the hydrolysis constant. Biochemistry. 42: 5186-94. PMID 12731859 DOI: 10.1021/Bi034041U  0.663
2003 Song J, Laskowski M, Qasim MA, Markley JL. NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain. Biochemistry. 42: 2847-56. PMID 12627950 DOI: 10.1021/Bi0269512  0.617
2003 Lin IJ, Gebel EB, Machonkin TE, Westler WM, Markley JL. Correlation between hydrogen bond lengths and reduction potentials in Clostridium pasteurianum rubredoxin. Journal of the American Chemical Society. 125: 1464-5. PMID 12568591 DOI: 10.1021/Ja028710N  0.615
2003 Song J, Markley J. Role of backbone dynamics and structure in controlling the hydrolysis constants of serine proteinase inhibitors Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5518  0.603
2003 Song J, Laskowski M, Qasim M, Markley J. Solution Structures of the Two Stable Conformers of Turkey Ovomucoid that Coexist at Low pH Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5472  0.617
2003 Song J, Laskowski M, Qasim M, Markley J. pKa determinations for OMTKY3 (no salt added) Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5448  0.554
2003 Song J, Laskowski M, Qasim M, Markley J. pKa determinations for P1-Ala OMTKY3 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5424  0.567
2003 Song J, Laskowski M, Qasim M, Markley J. pKa determinations for OMTKY3 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5411  0.576
2003 Zhao Q, Chae Y, Markley J. ATT an Arabidopsis thaliana Inhibitor of Trypsin and Chymotrypsin: Sequence-Specific Multinuclear Magnetic Resonance Assignments and Secondary Structure Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5056  0.487
2003 Machonkin TE, Westler WM, Markley JL. Structural determinants of electronic differences among classes of [2Fe2S] ferredoxins: Insights from paramagnetic NMR and electronic structure calculations Journal of Inorganic Biochemistry. 96: 184. DOI: 10.1016/S0162-0134(03)80699-2  0.304
2002 Kennedy MA, Montelione GT, Arrowsmith CH, Markley JL. Role for NMR in structural genomics. Journal of Structural and Functional Genomics. 2: 155-69. PMID 12836706 DOI: 10.1023/A:1021261026670  0.309
2002 Westler WM, Weinhold F, Markley JL. Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: comparison of calculated results with experimental data from NMR spectroscopy. Journal of the American Chemical Society. 124: 14373-81. PMID 12452711 DOI: 10.1021/Ja027735J  0.571
2002 Zhao Q, Chae YK, Markley JL. NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor. Biochemistry. 41: 12284-96. PMID 12369816 DOI: 10.1021/Bi025702A  0.673
2002 Dmitriev OY, Abildgaard F, Markley JL, Fillingame RH. Structure of Ala24/Asp61 --> Asp24/Asn61 substituted subunit c of Escherichia coli ATP synthase: implications for the mechanism of proton transport and rotary movement in the F0 complex. Biochemistry. 41: 5537-47. PMID 11969414 DOI: 10.1021/Bi012198L  0.4
2002 Westler WM, Frey PA, Lin J, Wemmer DE, Morimoto H, Williams PG, Markley JL. Evidence for a strong hydrogen bond in the catalytic dyad of transition-state analogue inhibitor complexes of chymotrypsin from proton-triton NMR isotope shifts. Journal of the American Chemical Society. 124: 4196-7. PMID 11960433 DOI: 10.1021/Ja017860F  0.334
2002 Machonkin TE, Westler WM, Markley JL. (13)C[(13)C] 2D NMR: a novel strategy for the study of paramagnetic proteins with slow electronic relaxation rates. Journal of the American Chemical Society. 124: 3204-5. PMID 11916393 DOI: 10.1021/Ja017733J  0.33
2002 DeRider ML, Wilkens SJ, Waddell MJ, Bretscher LE, Weinhold F, Raines RT, Markley JL. Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations. Journal of the American Chemical Society. 124: 2497-505. PMID 11890798 DOI: 10.1021/Ja0166904  0.796
2002 Kuloğlu ES, McCaslin DR, Markley JL, Volkman BF. Structural rearrangement of human lymphotactin, a C chemokine, under physiological solution conditions. The Journal of Biological Chemistry. 277: 17863-70. PMID 11889129 DOI: 10.1074/Jbc.M200402200  0.812
2002 Wilkens SJ, Westler WM, Weinhold F, Markley JL. Trans-hydrogen-bond (h2)J(NN) and (h1)J(NH) couplings in the DNA A-T base pair: natural bond orbital analysis. Journal of the American Chemical Society. 124: 1190-1. PMID 11841286 DOI: 10.1021/Ja017169C  0.792
2002 Walkenhorst WF, Edwards JA, Markley JL, Roder H. Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange. Protein Science : a Publication of the Protein Society. 11: 82-91. PMID 11742125 DOI: 10.1110/Ps.28202  0.793
2001 Wilkens SJ, Westler WM, Markley JL, Weinhold F. Natural J-coupling analysis: interpretation of scalar J-couplings in terms of natural bond orbitals. Journal of the American Chemical Society. 123: 12026-36. PMID 11724611 DOI: 10.1021/Ja016284K  0.785
2001 Luo W, Moe LA, Skjeldal L, Pikus JD, Markley JL, Fox BG. Assignment of 1H, 13C and 15N NMR signals from toluene 4-monooxygenase Rieske ferredoxin in its oxidized state. Journal of Biomolecular Nmr. 21: 73-4. PMID 11693573 DOI: 10.1023/A:1011924200884  0.331
2001 Kuloglu ES, McCaslin DR, Kitabwalla M, Pauza CD, Markley JL, Volkman BF. Monomeric solution structure of the prototypical 'C' chemokine lymphotactin. Biochemistry. 40: 12486-96. PMID 11601972 DOI: 10.1021/Bi011106P  0.829
2001 Song J, Markley JL. NMR chemical shift mapping of the binding site of a protein proteinase inhibitor: changes in the (1)H, (13)C and (15)N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha). Journal of Molecular Recognition : Jmr. 14: 166-71. PMID 11391787 DOI: 10.1002/Jmr.530  0.684
2001 Chen D, Zangl AL, Zhao Q, Markley JL, Zheng J, Bird IM, Magness RR. Ovine caveolin-1: cDNA cloning, E. coli expression, and association with endothelial nitric oxide synthase. Molecular and Cellular Endocrinology. 175: 41-56. PMID 11325515 DOI: 10.1016/S0303-7207(01)00403-8  0.465
2001 Hemmi H, Studts JM, Chae YK, Song J, Markley JL, Fox BG. Solution structure of the toluene 4-monooxygenase effector protein (T4moD). Biochemistry. 40: 3512-24. PMID 11297417 DOI: 10.1021/Bi0013703  0.771
2001 Kuloglu E, McCaslin D, Kitabwalla M, Pauza C, Markley J, Volkman B. 1H, 13C, and 15N Chemical Shift Assignments for Human Lymphotactin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5042  0.329
2000 Chae YK, Markley JL. Functional recombinant rabbit muscle phosphoglucomutase from Escherichia coli. Protein Expression and Purification. 20: 124-7. PMID 11035960 DOI: 10.1006/Prep.2000.1288  0.59
2000 Hemmi H, Studts JM, Chae YK, Markley JL, Fox BG. Assignment of 1H, 13C and 15N NMR signals in the toluene 4-monooxygenase effector protein. Journal of Biomolecular Nmr. 16: 359-60. PMID 10826893 DOI: 10.1023/A:1008333115661  0.613
2000 Assadi-Porter FM, Aceti DJ, Markley JL. Sweetness determinant sites of brazzein, a small, heat-stable, sweet- tasting protein Archives of Biochemistry and Biophysics. 376: 259-265. PMID 10775411 DOI: 10.1006/Abbi.2000.1726  0.393
2000 Assadi-Porter FM, Aceti DJ, Cheng H, Markley JL. Efficient production of recombinant brazzein, a small, heat-stable, sweet-tasting protein of plant origin Archives of Biochemistry and Biophysics. 376: 252-258. PMID 10775410 DOI: 10.1006/Abbi.2000.1725  0.338
2000 Xia B, Jenk D, LeMaster DM, Westler WM, Markley JL. Electron-nuclear interactions in two prototypical [2Fe-2S] proteins: selective (chiral) deuteration and analysis of (1)H and (2)H NMR signals from the alpha and beta hydrogens of cysteinyl residues that ligate the iron in the active sites of human ferredoxin and Anabaena 7120 vegetative ferredoxin. Archives of Biochemistry and Biophysics. 373: 328-34. PMID 10620356 DOI: 10.1006/Abbi.1999.1576  0.51
2000 Hemmi H, Chae YK, Studts J, Fox B, Markley J. Assignment of 1H, 13C and 15N signals of a recombinant effector protein (T4MOD) in Toluene-4-monooxygenase complex Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4560  0.571
2000 Xia B, Jenk D, LeMaster D, Westler W, Markley J. Hyperfine Cys Proton Signals from Reduced Human Ferredoxin Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4440  0.435
2000 Wang L, Li Y, Abildgaard F, Markley J, Yan H. NMR Solution Structure of Human Cellular Retinoic Acid Binding Protein-Type II Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr4186  0.345
1999 Chae YK, Abildgaard F, Royer CA, Markley JL. Oligomerization of the EK18 mutant of the trp repressor of Escherichia coli as observed by NMR spectroscopy. Archives of Biochemistry and Biophysics. 371: 35-40. PMID 10525287 DOI: 10.1006/Abbi.1999.1394  0.589
1999 Qasim MA, Lu SM, Ding J, Bateman KS, James MN, Anderson S, Song J, Markley JL, Ganz PJ, Saunders CW, Laskowski M. Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases. Biochemistry. 38: 7142-50. PMID 10353824 DOI: 10.1021/Bi990265U  0.632
1999 Kaslik G, Westler WM, Gráf L, Markley JL. Properties of the His57-Asp102 dyad of rat trypsin D189S in the zymogen, activated enzyme, and alpha1-proteinase inhibitor complexed forms. Archives of Biochemistry and Biophysics. 362: 254-64. PMID 9989934 DOI: 10.1006/Abbi.1998.1035  0.328
1999 Volkman BF, Anderson ME, Clark KD, Hayakawa Y, Strand MR, Markley JL. Structure of the insect cytokine peptide plasmatocyte-spreading peptide 1 from Pseudoplusia includens. The Journal of Biological Chemistry. 274: 4493-6. PMID 9988679 DOI: 10.1074/Jbc.274.8.4493  0.375
1999 Xia B, Pikus JD, Xia W, McClay K, Steffan RJ, Chae YK, Westler WM, Markley JL, Fox BG. Detection and classification of hyperfine-shifted 1H, 2H, and 15N resonances of the Rieske ferredoxin component of toluene 4-monooxygenase. Biochemistry. 38: 727-39. PMID 9888813 DOI: 10.1021/Bi981851A  0.672
1999 Volkman BF, Wilkens SJ, Lee AL, Xia B, Westler WM, Beger R, Markley JL. Redox-dependent magnetic alignment of Clostridium pasteurianum rubredoxin: Measurement of magnetic susceptibility anisotropy and prediction of pseudocontact shift contributions Journal of the American Chemical Society. 121: 4677-4683. DOI: 10.1021/Ja990079B  0.8
1998 Dzakula Z, Juranić, DeRider ML, Westler WM, Macura S, Markley JL. Analysis of error propagation from NMR-derived internuclear distances into molecular structure of cyclo-pro-gly. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 135: 454-65. PMID 9878473 DOI: 10.1006/Jmre.1998.1564  0.8
1998 Lin J, Westler WM, Cleland WW, Markley JL, Frey PA. Fractionation factors and activation energies for exchange of the low barrier hydrogen bonding proton in peptidyl trifluoromethyl ketone complexes of chymotrypsin. Proceedings of the National Academy of Sciences of the United States of America. 95: 14664-8. PMID 9843946 DOI: 10.1073/Pnas.95.25.14664  0.558
1998 Chylla RA, Volkman BF, Markley JL. Practical model fitting approaches to the direct extraction of NMR parameters simultaneously from all dimensions of multidimensional NMR spectra Journal of Biomolecular Nmr. 12: 277-297. PMID 9751999 DOI: 10.1023/A:1008254432254  0.329
1998 Chae YK, Abildgaard F, Chapman ER, Markley JL. Lipid binding ridge on loops 2 and 3 of the C2A domain of synaptotagmin I as revealed by NMR spectroscopy. The Journal of Biological Chemistry. 273: 25659-63. PMID 9748232 DOI: 10.1074/Jbc.273.40.25659  0.524
1998 Markley JL, Bax A, Arata Y, Hilbers CW, Kaptein R, Sykes BD, Wright PE, Wüthrich K. Recommendations for the presentation of NMR structures of proteins and nucleic acids--IUPAC-IUBMB-IUPAB Inter-Union Task Group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy. European Journal of Biochemistry / Febs. 256: 1-15. PMID 9746340 DOI: 10.1046/J.1432-1327.1998.2560001.X  0.373
1998 Wang L, Li Y, Abildgaard F, Markley JL, Yan H. NMR solution structure of type II human cellular retinoic acid binding protein: implications for ligand binding. Biochemistry. 37: 12727-36. PMID 9737849 DOI: 10.1021/Bi9808924  0.41
1998 Choe S, Dzakula Z, Kuloglu ES, Markley JL. Assignment of 1H, 13C, and 15N signals of turkey ovomucoid third domain at pH 2.0. Journal of Biomolecular Nmr. 12: 193-5. PMID 9729798 DOI: 10.1023/A:1008262429199  0.782
1998 Markley JL, Bax A, Arata Y, Hilbers CW, Kaptein R, Sykes BD, Wright PE, Wüthrich K. Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. Journal of Biomolecular Nmr. 12: 1-23. PMID 9729785 DOI: 10.1023/A:1008290618449  0.373
1998 Volkman BF, Alam SL, Satterlee JD, Markley JL. Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO Biochemistry. 37: 10906-10919. PMID 9692983 DOI: 10.1021/Bi980810B  0.388
1998 Caldwell JE, Abildgaard F, Ming D, Hellekant G, Markley JL. Complete 1H and partial 13C resonance assignments at 37 and 22 degrees C for brazzein, an intensely sweet protein. Journal of Biomolecular Nmr. 11: 231-2. PMID 9679299 DOI: 10.1023/A:1008262104643  0.616
1998 Alam SL, Volkman BF, Markley JL, Satterlee JD. Detailed NMR analysis of the heme-protein interactions in component IV Glycera dibranchiata monomeric hemoglobin-CO Journal of Biomolecular Nmr. 11: 119-133. PMID 9679291 DOI: 10.1023/A:1008202621725  0.437
1998 Weber-Main AM, Hurley JK, Cheng H, Xia B, Chae YK, Markley JL, Martinez-Júlvez M, Gomez-Moreno C, Stankovich MT, Tollin G. An electrochemical, kinetic, and spectroscopic characterization of [2Fe-2S] vegetative and heterocyst ferredoxins from Anabaena 7120 with mutations in the cluster binding loop. Archives of Biochemistry and Biophysics. 355: 181-8. PMID 9675025 DOI: 10.1006/Abbi.1998.0743  0.637
1998 Markley JL, Bax A, Arata Y, Hilbers CW, Kaptein R, Sykes BD, Wright PE, Wüthrich K. Recommendations for the presentation of NMR structures of proteins and nucleic acids. Journal of Molecular Biology. 280: 933-52. PMID 9671561 DOI: 10.1006/Jmbi.1998.1852  0.359
1998 Girvin ME, Rastogi VK, Abildgaard F, Markley JL, Fillingame RH. Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase Biochemistry. 37: 8817-8824. PMID 9636021 DOI: 10.1021/Bi980511M  0.438
1998 Caldwell JE, Abildgaard F, Dzakula Z, Ming D, Hellekant G, Markley JL. Solution structure of the thermostable sweet-tasting protein brazzein. Nature Structural Biology. 5: 427-31. PMID 9628478 DOI: 10.1038/nsb0698-427  0.616
1998 Prehoda KE, Mooberry ES, Markley JL. Pressure denaturation of proteins: evaluation of compressibility effects. Biochemistry. 37: 5785-90. PMID 9558311 DOI: 10.1021/Bi980384U  0.635
1998 Xia B, Volkman BF, Markley JL. Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear, multidimensional NMR spectroscopy. Biochemistry. 37: 3965-73. PMID 9521718 DOI: 10.1021/Bi972722H  0.548
1998 Hirasawa M, Hurley JK, Salamon Z, Tollin G, Markley JL, Cheng H, Xia B, Knaff DB. The role of aromatic and acidic amino acids in the electron transfer reaction catalyzed by spinach ferredoxin-dependent glutamate synthase. Biochimica Et Biophysica Acta. 1363: 134-46. PMID 9507092 DOI: 10.1016/S0005-2728(97)00098-4  0.449
1998 Markley JL, Bax A, Arata Y, Hilbers CW, Kaptein R, Sykes BD, Wright PE, Wüthrich K. Recommendations for the presentation of NMR structures of proteins and nucleic acids (IUPAC Recommendations 1998) Pure and Applied Chemistry. 70: 117-142. DOI: 10.1351/Pac199870010117  0.37
1998 Caldwell JE, Abildgaard F, Ming D, Hellekant G, Markley JL. Journal of Biomolecular Nmr. 12: 469-469. DOI: 10.1023/A:1008386428465  0.525
1998 Wilkens SJ, Xia B, Volkman BF, Weinhold F, Markley JL, Westler WM. Inadequacies of the Point-Dipole Approximation for Describing Electron−Nuclear Interactions in Paramagnetic Proteins:  Hybrid Density Functional Calculations and the Analysis of NMR Relaxation of High-Spin Iron(III) Rubredoxin The Journal of Physical Chemistry B. 102: 8300-8305. DOI: 10.1021/Jp982018Q  0.804
1998 Xia B, Wilkens SJ, Westler WM, Markley JL. Amplification of one-bond 1H/1H isotope effects on 15N chemical shifts in Clostridium pasteurianum rubredoxin by fermi-contact effects through hydrogen bonds Journal of the American Chemical Society. 120: 4893-4894. DOI: 10.1021/Ja974167C  0.79
1998 Wilkens SJ, Xia B, Weinhold F, Markley JL, Westler WM. Nmr investigations of clostridium pasteurianum rubredoxin. Origin of hyperfine 1H, 2H, 13C, and 15N NMR chemical shifts in iron- sulfur proteins as determined by comparison of experimental data with hybrid density functional calculations Journal of the American Chemical Society. 120: 4806-4814. DOI: 10.1021/Ja973489D  0.803
1997 Prantner AM, Volkman BF, Wilkens SJ, Xia B, Markley JL. Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin: oxidation state-dependent changes in chemical shifts and relaxation rates. Journal of Biomolecular Nmr. 10: 411-2. PMID 9460246 DOI: 10.1023/A:1018347418206  0.793
1997 Volkman BF, Prantner AM, Wilkens SJ, Xia B, Markley JL. Assignment of 1H, 13C, and 15N signals of oxidized Clostridium pasteurianum rubredoxin. Journal of Biomolecular Nmr. 10: 409-10. PMID 9460245 DOI: 10.1023/A:1018315801701  0.781
1997 Hurley JK, Weber-Main AM, Hodges AE, Stankovich MT, Benning MM, Holden HM, Cheng H, Xia B, Markley JL, Genzor C, Gomez-Moreno C, Hafezi R, Tollin G. Iron-sulfur cluster cysteine-to-serine mutants of Anabaena -2Fe-2S- ferredoxin exhibit unexpected redox properties and are competent in electron transfer to ferredoxin:NADP+ reductase. Biochemistry. 36: 15109-17. PMID 9398238 DOI: 10.1021/Bi972001I  0.476
1997 Chivers PT, Prehoda KE, Volkman BF, Kim BM, Markley JL, Raines RT. Microscopic pKa values of Escherichia coli thioredoxin. Biochemistry. 36: 14985-91. PMID 9398223 DOI: 10.1021/Bi970071J  0.675
1997 Wang J, Truckses DM, Abildgaard F, Dzakula Z, Zolnai Z, Markley JL. Solution structures of staphylococcal nuclease from multidimensional, multinuclear NMR: nuclease-H124L and its ternary complex with Ca2+ and thymidine-3',5'-bisphosphate. Journal of Biomolecular Nmr. 10: 143-64. PMID 9369015 DOI: 10.1023/A:1018350004729  0.814
1997 Hurley JK, Weber-Main AM, Stankovich MT, Benning MM, Thoden JB, Vanhooke JL, Holden HM, Chae YK, Xia B, Cheng H, Markley JL, Martinez-Júlvez M, Gómez-Moreno C, Schmeits JL, Tollin G. Structure-function relationships in Anabaena ferredoxin: correlations between X-ray crystal structures, reduction potentials, and rate constants of electron transfer to ferredoxin:NADP+ reductase for site-specific ferredoxin mutants. Biochemistry. 36: 11100-17. PMID 9287153 DOI: 10.1021/Bi9709001  0.624
1997 Rémigy H, Jaquinod M, Pétillot Y, Gagnon J, Cheng H, Xia B, Markley JL, Hurley JK, Tollin G, Forest E. Probing the influence of mutations on the stability of a ferredoxin by mass spectrometry. Journal of Protein Chemistry. 16: 527-32. PMID 9246639 DOI: 10.1023/A:1026325914372  0.507
1997 Kaslik G, Kardos J, Szabó E, Szilágyi L, Závodszky P, Westler WM, Markley JL, Gráf L. Effects of serpin binding on the target proteinase: global stabilization, localized increased structural flexibility, and conserved hydrogen bonding at the active site. Biochemistry. 36: 5455-64. PMID 9154928 DOI: 10.1021/Bi962931M  0.373
1996 Truckses DM, Somoza JR, Prehoda KE, Miller SC, Markley JL. Coupling between trans/cis proline isomerization and protein stability in staphylococcal nuclease. Protein Science : a Publication of the Protein Society. 5: 1907-16. PMID 8880915 DOI: 10.1002/Pro.5560050917  0.809
1996 Markley JL, Westler WM. Protonation-state dependence of hydrogen bond strengths and exchange rates in a serine protease catalytic triad: bovine chymotrypsinogen A. Biochemistry. 35: 11092-7. PMID 8780512 DOI: 10.1021/Bi961366K  0.329
1996 Hinck AP, Truckses DM, Markley JL. Engineered disulfide bonds in staphylococcal nuclease: effects on the stability and conformation of the folded protein. Biochemistry. 35: 10328-38. PMID 8756688 DOI: 10.1021/Bi960309O  0.805
1996 Xia B, Cheng H, Bandarian V, Reed GH, Markley JL. Human ferredoxin: overproduction in Escherichia coli, reconstitution in vitro, and spectroscopic studies of iron-sulfur cluster ligand cysteine-to-serine mutants. Biochemistry. 35: 9488-95. PMID 8755728 DOI: 10.1021/Bi960467F  0.472
1996 Dzakula Z, Westler WM, Markley JL. Continuous probability distribution (CUPID) analysis of potentials for internal rotations. Journal of Magnetic Resonance. Series B. 111: 109-26. PMID 8661269 DOI: 10.1006/Jmrb.1996.0070  0.323
1996 Hoogstraten CG, Markley JL. Effects of experimentally achievable improvements in the quality of NMR distance constraints on the accuracy of calculated protein structures. Journal of Molecular Biology. 258: 334-48. PMID 8627630 DOI: 10.1006/Jmbi.1996.0254  0.742
1996 Vidugiris GJ, Truckses DM, Markley JL, Royer CA. High-pressure denaturation of staphylococcal nuclease proline-to-glycine substitution mutants. Biochemistry. 35: 3857-64. PMID 8620010 DOI: 10.1021/Bi952012G  0.787
1996 Edison AS, Weinhold F, Markley JL. Theoretical Studies of Protium/Deuterium Fractionation Factors and Cooperative Hydrogen Bonding in PeptidesJ.Am.Chem.Soc.1995,117, 9619−9624 Journal of the American Chemical Society. 118: 5830-5830. DOI: 10.1021/Ja965407B  0.546
1996 Džakula Ž, DeRider ML, Markley JL. Conformational Analysis of Molecules with Five-Membered Rings through NMR Determination of the Continuous Probability Distribution (CUPID) for Pseudorotation Journal of the American Chemical Society. 118: 12796-12803. DOI: 10.1021/Ja962160+  0.347
1996 Prehoda KE, Loh SN, Markley JL. Modeling Volume Changes in Proteins Using Partial Molar Volumes of Model Compounds Techniques in Protein Chemistry. 7: 433-438. DOI: 10.1016/S1080-8914(96)80047-0  0.739
1996 Zolnai Z, Juranić N, Markley JL, Macura S. Zooming, a Practical Strategy for Improving the Quality of Multidimensional NMR Spectra Journal of Magnetic Resonance, Series A. 119: 53-64. DOI: 10.1006/Jmra.1996.0051  0.321
1995 Edison AS, Markley JL, Weinhold F. Calculations of one-, two- and three-bond nuclear spin-spin couplings in a model peptide and correlations with experimental data. Journal of Biomolecular Nmr. 5: 332. PMID 22911507 DOI: 10.1007/Bf00211763  0.68
1995 Burkhart BM, Ramakrishnan B, Yan H, Reedstrom RJ, Markley JL, Straus NA, Sundaralingam M. Structure of the trigonal form of recombinant oxidized flavodoxin from Anabaena 7120 at 1.40 A resolution. Acta Crystallographica. Section D, Biological Crystallography. 51: 318-30. PMID 15299298 DOI: 10.1107/S0907444994011716  0.39
1995 Pinkerton TC, Howe WJ, Ulrich EL, Comiskey JP, Haginaka J, Murashima T, Walkenhorst WF, Westler WM, Markley JL. Protein binding chiral discrimination of HPLC stationary phases made with whole, fragmented, and third domain turkey ovomucoid. Analytical Chemistry. 67: 2354-67. PMID 8686875 DOI: 10.1021/Ac00110A006  0.776
1995 Wishart DS, Bigam CG, Yao J, Abildgaard F, Dyson HJ, Oldfield E, Markley JL, Sykes BD. 1H, 13C and 15N chemical shift referencing in biomolecular NMR. Journal of Biomolecular Nmr. 6: 135-140. PMID 8589602 DOI: 10.1007/Bf00211777  0.36
1995 Hoogstraten CG, Westler WM, Mooberry ES, Macura S, Markley JL. Analysis of transverse cross relaxation in proteins within a simplified relaxation submatrix: BD-ROESY. Journal of Magnetic Resonance. Series B. 109: 76-9. PMID 8581311 DOI: 10.1006/Jmrb.1995.1149  0.705
1995 Hoogstraten CG, Choe S, Westler WM, Markley JL. Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data. Protein Science : a Publication of the Protein Society. 4: 2289-99. PMID 8563625 DOI: 10.1002/Pro.5560041106  0.765
1995 Cheng H, Westler WM, Xia B, Oh BH, Markley JL. Protein expression, selective isotopic labeling, and analysis of hyperfine-shifted NMR signals of Anabaena 7120 vegetative [2Fe-2S]ferredoxin. Archives of Biochemistry and Biophysics. 316: 619-34. PMID 7840674 DOI: 10.1006/Abbi.1995.1082  0.644
1995 Macura S, Westler WM, Markley JL. Two-dimensional exchange spectroscopy of proteins. Methods in Enzymology. 239: 106-44. PMID 7830582 DOI: 10.1016/S0076-6879(94)39005-3  0.34
1995 Chae YK, Markley JL. Analysis of the hyperfine-shifted nitrogen-15 resonances of the oxidized form of Anabaena 7120 heterocyst ferredoxin. Biochemistry. 34: 188-93. PMID 7819195 DOI: 10.1021/Bi00001A023  0.583
1995 Xia B, Cheng H, Skjeldal L, Coghlan VM, Vickery LE, Markley JL. Multinuclear magnetic resonance and mutagenesis studies of the histidine residues of human mitochondrial ferredoxin. Biochemistry. 34: 180-7. PMID 7819194 DOI: 10.1021/Bi00001A022  0.539
1995 Chylla RA, Markley JL. Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data. Journal of Biomolecular Nmr. 5: 245-58. PMID 7787422 DOI: 10.1007/Bf00211752  0.339
1995 Hurley JK, Caffrey MS, Markley JL, Cheng H, Xia B, Chae YK, Holden HM, Tollin G. Mutations of surface residues in Anabaena vegetative and heterocyst ferredoxin that affect thermodynamic stability as determined by guanidine hydrochloride denaturation. Protein Science : a Publication of the Protein Society. 4: 58-64. PMID 7773177 DOI: 10.1002/Pro.5560040108  0.631
1995 Vidugiris GJ, Markley JL, Royer CA. Evidence for a molten globule-like transition state in protein folding from determination of activation volumes. Biochemistry. 34: 4909-12. PMID 7711012 DOI: 10.1021/Bi00015A001  0.311
1995 Edison AS, Weinhold F, Markley JL. Theoretical Studies of Protium/Deuterium Fractionation Factors and Cooperative Hydrogen Bonding in Peptides Journal of the American Chemical Society. 117: 9619-9624. DOI: 10.1021/Ja00143A001  0.653
1995 Hoogstraten CG, Westler WM, Macura S, Markley JL. NOE Measurements in the Absence of Spin Diffusion: Application to Methylene Groups in Proteins and Effects on Local Structural Parameters. [Erratum to document cited in CA122:310070] Journal of the American Chemical Society. 117: 8885-8885. DOI: 10.1021/Ja00139A037  0.701
1995 Pearson JG, Wang J, Markley JL, Le H, Oldfield E. Protein Structure Refinement Using Carbon-13 Nuclear Magnetic Resonance Spectroscopic Chemical Shifts and Quantum Chemistry Journal of the American Chemical Society. 117: 8823-8829. DOI: 10.1021/Ja00139A016  0.39
1995 Hoogstraten CG, Westler WM, Macura SI, Markley JL. NOE Measurements in the Absence of Spin Diffusion: Application to Methylene Groups in Proteins and Effects on Local Structural Parameters Journal of the American Chemical Society. 117: 5610-5611. DOI: 10.1021/Ja00125A033  0.704
1995 Xia B, Westler WM, Cheng H, Meyer J, Moulis J, Markley JL. Detection and Classification of Hyperfine-Shifted 1H, 2H, and 15N Resonances from the Four Cysteines That Ligate Iron in Oxidized and Reduced Clostridium pasteurianum Rubredoxin Journal of the American Chemical Society. 117: 5347-5350. DOI: 10.1021/Ja00124A017  0.462
1995 Edison AS, Markley JL, Weinhold F. Ab Initio Calculations of Protium/Deuterium Fractionation Factors in O2H5+ Clusters The Journal of Physical Chemistry. 99: 8013-8016. DOI: 10.1021/J100020A025  0.637
1995 Rompel A, Burghaus O, Cheng H, Xia B, Markley J, Yachandra V, Sauer K, Klein M. Hydrogen-bonding interactions of the [2Fe-2S]-cluster of ferredoxin from Anabaena 7120 — A pulsed EPR study Journal of Inorganic Biochemistry. 59: 534. DOI: 10.1016/0162-0134(95)97629-5  0.468
1994 Loh SN, Markley JL. Hydrogen bonding in proteins as studied by amide hydrogen D/H fractionation factors: application to staphylococcal nuclease. Biochemistry. 33: 1029-36. PMID 8305430 DOI: 10.1021/Bi00170A023  0.658
1994 Cabañas ME, Alonso J, Arús C, Anderson ME, Westler WM, Markley JL. A versatile perifusion system for the NMR spectroscopy of bovine retina. Assignment of resonances and effect of ischemia. Experimental Eye Research. 57: 669-78. PMID 8150020 DOI: 10.1006/Exer.1993.1175  0.333
1994 Chae YK, Abildgaard F, Mooberry ES, Markley JL. Multinuclear, multidimensional NMR studies of Anabaena 7120 heterocyst ferredoxin. Sequence-specific resonance assignments and secondary structure of the oxidized form in solution. Biochemistry. 33: 3287-95. PMID 8136364 DOI: 10.1021/Bi00177A020  0.588
1994 Cheng H, Xia B, Reed GH, Markley JL. Optical, EPR, and 1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin. Biochemistry. 33: 3155-64. PMID 8136349 DOI: 10.1021/Bi00177A003  0.509
1994 Walkenhorst WF, Krezel AM, Rhyu GI, Markley JL. Solution structure of reactive-site hydrolyzed turkey ovomucoid third domain by nuclear magnetic resonance and distance geometry methods. Journal of Molecular Biology. 242: 215-30. PMID 8089843 DOI: 10.1006/Jmbi.1994.1574  0.811
1994 Krezel AM, Darba P, Robertson AD, Fejzo J, Macura S, Markley JL. Solution structure of turkey ovomucoid third domain as determined from nuclear magnetic resonance data. Journal of Molecular Biology. 242: 203-14. PMID 8089842 DOI: 10.1006/Jmbi.1994.1573  0.785
1994 Edison AS, Weinhold F, Westler WM, Markley JL. Estimates of phi and psi torsion angles in proteins from one-, two- and three-bond nuclear spin-spin couplings: application to staphylococcal nuclease. Journal of Biomolecular Nmr. 4: 543-51. PMID 8075540 DOI: 10.1007/Bf00156619  0.671
1994 Edison AS, Markley JL, Weinhold F. Calculations of one-, two- and three-bond nuclear spin-spin couplings in a model peptide and correlations with experimental data. Journal of Biomolecular Nmr. 4: 519-42. PMID 8075539 DOI: 10.1007/BF00156618  0.642
1994 Holden HM, Jacobson BL, Hurley JK, Tollin G, Oh BH, Skjeldal L, Chae YK, Cheng H, Xia B, Markley JL. Structure-function studies of [2Fe-2S] ferredoxins. Journal of Bioenergetics and Biomembranes. 26: 67-88. PMID 8027024 DOI: 10.1007/Bf00763220  0.72
1994 Olson JB, Markley JL. Evaluation of an algorithm for the automated sequential assignment of protein backbone resonances: a demonstration of the connectivity tracing assignment tools (CONTRAST) software package. Journal of Biomolecular Nmr. 4: 385-410. PMID 8019143 DOI: 10.1007/Bf00179348  0.332
1994 Edison AS, Abildgaard F, Westler WM, Mooberry ES, Markley JL. Practical introduction to theory and implementation of multinuclear, multidimensional nuclear magnetic resonance experiments. Methods in Enzymology. 239: 3-79. PMID 7830587 DOI: 10.1016/S0076-6879(94)39003-7  0.611
1994 Gómez-Moreno C, Medina M, Hurley JK, Cusanovich MA, Markley JL, Cheng H, Xia B, Chae YK, Tollin G. Protein engineering for the elucidation of the mechanism of electron transfer in redox proteins. Biochemical Society Transactions. 22: 796-800. PMID 7821688 DOI: 10.1042/Bst0220796  0.606
1994 Markley JL, Prehoda K, Truckses D, Wang J, Hinck AP, Loh SN, Walkenhorst WF. Case study of protein structure, stability, and function: NMR investigations of the proline residues in staphylococcal nuclease Pure and Applied Chemistry. 66: 65-69. DOI: 10.1351/Pac199466010065  0.788
1994 Loh SN, Prehoda KE, Wang J, Markley JL. Measuring Global and Local Structural Free Energy Changes in Staphylococcal Nuclease by NMR-Observed Hydrogen Exchange Techniques in Protein Chemistry. 5: 431-438. DOI: 10.1016/B978-0-12-194710-1.50053-9  0.773
1993 Royer CA, Hinck AP, Loh SN, Prehoda KE, Peng X, Jonas J, Markley JL. Effects of amino acid substitutions on the pressure denaturation of staphylococcal nuclease as monitored by fluorescence and nuclear magnetic resonance spectroscopy. Biochemistry. 32: 5222-32. PMID 8494899 DOI: 10.1021/Bi00070A034  0.799
1993 Hinck AP, Walkenhorst WF, Westler WM, Choe S, Markley JL. Overexpression and purification of avian ovomucoid third domains in Escherichia coli. Protein Engineering. 6: 221-7. PMID 8475048 DOI: 10.1093/Protein/6.2.221  0.793
1993 Anderson ME, Markley JL, Arùs C, Chobanian MC. A perifusion loop-gap resonator NMR probe for aerobic cell suspensions. Magnetic Resonance in Medicine. 29: 563-6. PMID 8464375 DOI: 10.1002/Mrm.1910290422  0.322
1993 Hurley JK, Salamon Z, Meyer TE, Fitch JC, Cusanovich MA, Markley JL, Cheng H, Xia B, Chae YK, Medina M. Amino acid residues in Anabaena ferredoxin crucial to interaction with ferredoxin-NADP+ reductase: site-directed mutagenesis and laser flash photolysis. Biochemistry. 32: 9346-54. PMID 8369305 DOI: 10.1021/Bi00087A013  0.615
1993 Jacobson BL, Chae YK, Markley JL, Rayment I, Holden HM. Molecular structure of the oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120 determined to 1.7-A resolution. Biochemistry. 32: 6788-93. PMID 8329401 DOI: 10.1021/Bi00077A033  0.575
1993 Byeon IJ, Yan H, Edison AS, Mooberry ES, Abildgaard F, Markley JL, Tsai MD. Mechanism of adenylate kinase. 1H, 13C, and 15N NMR assignments, secondary structures, and substrate binding sites. Biochemistry. 32: 12508-21. PMID 8241142 DOI: 10.1021/Bi00097A031  0.657
1993 Chylla RA, Markley JL. Improved frequency resolution in multidimensional constant-time experiments by multidimensional Bayesian analysis. Journal of Biomolecular Nmr. 3: 515-33. PMID 8219738 DOI: 10.1007/Bf00174607  0.308
1993 Hinck AP, Eberhardt ES, Markley JL. NMR strategy for determining Xaa-Pro peptide bond configurations in proteins: mutants of staphylococcal nuclease with altered configuration at proline-117. Biochemistry. 32: 11810-8. PMID 8218252 DOI: 10.1021/Bi00095A009  0.641
1993 Loh SN, Prehoda KE, Wang J, Markley JL. Hydrogen exchange in unligated and ligated staphylococcal nuclease. Biochemistry. 32: 11022-8. PMID 8218167 DOI: 10.1021/Bi00092A011  0.778
1993 Hurley JK, Cheng H, Xia B, Markley JL, Medina M, Gomez-Moreno C, Tollin G. An aromatic amino acid is required at position 65 in Anabaena ferredoxin for rapid electron transfer to ferredoxin:NADP+ reductase Journal of the American Chemical Society. 115: 11698-11701. DOI: 10.1021/Ja00078A006  0.462
1993 Edison AS, Markley JL, Weinhold F. Calculation of nuclear spin-spin coupling constants with ab initio molecular orbital wave functions The Journal of Physical Chemistry. 97: 11657-11665. DOI: 10.1021/J100147A018  0.666
1993 Loh SN, Markley JL. Measurement of Amide Hydrogen D/H Fractionation Factors in Proteins by NMR Spectroscopy Techniques in Protein Chemistry. 517-524. DOI: 10.1016/B978-0-12-058757-5.50061-5  0.679
1993 Weber-Main A, Cheng H, Xia B, Stankovich M, Markley J. Comparison of the thermodynamic electrochemical properties of wild-type and mutant [2Fe2S] ferredoxins from Anabaena 7120 Journal of Inorganic Biochemistry. 51: 31. DOI: 10.1016/0162-0134(93)85069-K  0.402
1993 Hoogstraten CG, Westler WM, Macura S, Markley JL. Improved Measurement of Longer Proton-Proton Distances in Proteins by Relaxation Network Editing Journal of Magnetic Resonance, Series B. 102: 232-235. DOI: 10.1006/Jmrb.1993.1090  0.711
1993 Chylla R, Markley J. Simultaneous Basepoint Correction and Signal Recognition in Multidimensional NMR Spectra Journal of Magnetic Resonance, Series B. 102: 148-154. DOI: 10.1006/Jmrb.1993.1077  0.319
1992 Seavey BR, Farr EA, Westler WM, Markley JL. A relational database for sequence-specific protein NMR data. Journal of Biomolecular Nmr. 1: 217-36. PMID 1841696 DOI: 10.1007/Bf01875516  0.356
1992 Wang JF, Hinck AP, Loh SN, LeMaster DM, Markley JL. Solution studies of staphylococcal nuclease H124L. 2. 1H, 13C, and 15N chemical shift assignments for the unligated enzyme and analysis of chemical shift changes that accompany formation of the nuclease-thymidine 3',5'-bisphosphate-calcium ternary complex. Biochemistry. 31: 921-36. PMID 1731949 DOI: 10.1021/Bi00118A039  0.769
1992 Wang JF, Mooberry ES, Walkenhorst WF, Markley JL. Solution studies of staphylococcal nuclease H124L. 1. Backbone 1H and 15N resonances and secondary structure of the unligated enzyme as identified by three-dimensional NMR spectroscopy. Biochemistry. 31: 911-20. PMID 1731948 DOI: 10.1021/Bi00118A038  0.802
1992 Jacobson BL, Chae YK, Böhme H, Markley JL, Holden HM. Crystallization and preliminary analysis of oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120. Archives of Biochemistry and Biophysics. 294: 279-81. PMID 1550351 DOI: 10.1016/0003-9861(92)90169-W  0.556
1992 Houseman AL, Oh BH, Kennedy MC, Fan C, Werst MM, Beinert H, Markley JL, Hoffman BM. 14,15N, 13C, 57Fe, and 1,2H Q-band ENDOR study of Fe-S proteins with clusters that have endogenous sulfur ligands. Biochemistry. 31: 2073-80. PMID 1311203 DOI: 10.1021/Bi00122A026  0.54
1992 Rao ST, Shaffie F, Yu C, Satyshur KA, Stockman BJ, Markley JL, Sundarlingam M. Structure of the oxidized long-chain flavodoxin from Anabaena 7120 at 2 A resolution. Protein Science : a Publication of the Protein Society. 1: 1413-27. PMID 1303762 DOI: 10.1002/Pro.5560011103  0.686
1992 Dzakula Z, Westler WM, Edison AS, Markley JL. The "CUPID" method for calculating the continuous probability distribution of rotamers from NMR data. [Erratum to document cited in CA117(4):34037s] Journal of the American Chemical Society. 114: 9727-9727. DOI: 10.1021/Ja00050A102  0.544
1992 Dzakula Z, Edison AS, Westler WM, Markley JL. Analysis of .chi.1 rotamer populations from NMR data by the CUPID method. [Erratum to document cited in CA117(5):49186p] Journal of the American Chemical Society. 114: 9727-9727. DOI: 10.1021/Ja00050A101  0.542
1992 Dzakula Z, Edison AS, Westler WM, Markley JL. Analysis of .chi.1 rotamer populations from NMR data by the CUPID method Journal of the American Chemical Society. 114: 6200-6207. DOI: 10.1021/Ja00041A044  0.591
1992 Dzakula Z, Westler WM, Edison AS, Markley JL. The "CUPID" method for calculating the continuous probability distribution of rotamers from NMR data Journal of the American Chemical Society. 114: 6195-6199. DOI: 10.1021/Ja00041A043  0.589
1992 Stockman BJ, Markley JL. NMR analysis of ligand binding. Current Opinion in Structural Biology 1992, 2:52...-56 Current Opinion in Structural Biology. 2: 52-56. DOI: 10.1016/0959-440X(92)90176-8  0.686
1992 Macura S, Fejzo J, Hoogstraten CG, Westler WM, Markley JL. Topological Editing of Cross-Relaxation Networks Israel Journal of Chemistry. 32: 245-256. DOI: 10.1002/Ijch.199200031  0.707
1991 Skjeldal L, Markley JL, Coghlan VM, Vickery LE. 1H NMR spectra of vertebrate [2Fe-2S] ferredoxins. Hyperfine resonances suggest different electron delocalization patterns from plant ferredoxins Biochemistry®. 30: 9078-9083. PMID 1909889 DOI: 10.1021/Bi00101A024  0.31
1991 Skjeldal L, Westler WM, Oh BH, Krezel AM, Holden HM, Jacobson BL, Rayment I, Markley JL. Two-dimensional magnetization exchange spectroscopy of Anabaena 7120 ferredoxin. Nuclear Overhauser effect and electron self-exchange cross peaks from amino acid residues surrounding the 2Fe-2S* cluster. Biochemistry. 30: 7363-8. PMID 1906741 DOI: 10.1021/Bi00244A002  0.777
1991 Rypniewski WR, Breiter DR, Benning MM, Wesenberg G, Oh BH, Markley JL, Rayment I, Holden HM. Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120. Biochemistry. 30: 4126-31. PMID 1902376 DOI: 10.1021/Bi00231A003  0.528
1991 Fejzo J, Krezel AM, Westler WM, Macura S, Markley JL. Refinement of the NMR solution structure of a protein to remove distortions arising from neglect of internal motion. Biochemistry. 30: 3807-11. PMID 1850288 DOI: 10.1021/Bi00230A001  0.744
1991 Fejzo J, Krezel AM, Westler WM, Macura S, Markley JL. Direct cross-relaxation NOESY (D.NOESY). A method for removing spin-diffusion cross peaks from two-dimensional NOE spectra of macromolecules Journal of Magnetic Resonance (1969). 92: 651-657. DOI: 10.1016/0022-2364(91)90365-Z  0.717
1991 Edison AS, Westler WM, Markley JL. Elucidation of amino acid spin systems in proteins and determination of heteronuclear coupling constants by carbon-proton-proton three-dimensional NMR Journal of Magnetic Resonance (1969). 92: 434-438. DOI: 10.1016/0022-2364(91)90285-2  0.602
1991 Fejzo J, Westler WM, Macura S, Markley JL. Elimination of chemical-exchange-mediated spin diffusion from exchange spectra of macromolecules. Exchange-decoupled NOESY (XD-NOESY) Journal of Magnetic Resonance (1969). 92: 195-202. DOI: 10.1016/0022-2364(91)90262-R  0.334
1991 Fejzo J, Westler WM, Macura S, Markley JL. Strategies for eliminating unwanted cross-relaxation and coherence-transfer effects from two-dimensional chemical-exchange spectra Journal of Magnetic Resonance (1969). 92: 20-29. DOI: 10.1016/0022-2364(91)90244-N  0.308
1991 McCain DC, Westler WM, Markley JL. A two-dimensional technique for chemical-shift resolution in one-dimensional NMR images Journal of Magnetic Resonance (1969). 93: 181-183. DOI: 10.1016/0022-2364(91)90039-V  0.317
1990 Alonso J, Arús C, Westler WM, Markley JL. Two-dimensional spectra of intact tissue: homonuclear Hartmann-Hahn spectroscopy provides increased sensitivity and information content as compared to COSY. Magnetic Resonance in Medicine. 15: 142-51. PMID 2374494 DOI: 10.1002/Mrm.1910150116  0.333
1990 Alexandrescu AT, Hinck AP, Markley JL. Coupling between local structure and global stability of a protein: mutants of staphylococcal nuclease. Biochemistry. 29: 4516-25. PMID 2372535 DOI: 10.1021/Bi00471A003  0.732
1990 Wang JF, Hinck AP, Loh SN, Markley JL. Two-dimensional NMR studies of staphylococcal nuclease: evidence for conformational heterogeneity from hydrogen-1, carbon-13, and nitrogen-15 spin system assignments of the aromatic amino acids in the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex. Biochemistry. 29: 4242-53. PMID 2361141 DOI: 10.1021/Bi00469A029  0.775
1990 Oh BH, Markley JL. Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 3. Detection and characterization of hyperfine-shifted nitrogen-15 and hydrogen-1 resonances of the oxidized form. Biochemistry. 29: 4012-7. PMID 2354173 DOI: 10.1021/Bi00468A031  0.572
1990 Oh BH, Mooberry ES, Markley JL. Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 2. Sequence-specific carbon-13 and nitrogen-15 resonance assignments of the oxidized form. Biochemistry. 29: 4004-11. PMID 2354172 DOI: 10.1021/Bi00468A030  0.565
1990 Oh BH, Markley JL. Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 1. Sequence-specific hydrogen-1 resonance assignments and secondary structure in solution of the oxidized form. Biochemistry. 29: 3993-4004. PMID 2354171 DOI: 10.1021/Bi00468A029  0.59
1990 Robertson AD, Rhyu GI, Westler WM, Markley JL. Assignment of the 13C-NMR spectra of virgin and reactive-site modified turkey ovomucoid third domain. Biopolymers. 29: 461-7. PMID 2331509 DOI: 10.1002/Bip.360290216  0.812
1990 Skjeldal L, Westler WM, Markley JL. Detection and characterization of hyperfine-shifted resonances in the proton nuclear magnetic resonance spectrum of Anabaena 7120 ferredoxin at high magnetic fields. Archives of Biochemistry and Biophysics. 278: 482-5. PMID 2327800 DOI: 10.1016/0003-9861(90)90289-B  0.342
1990 Wang JF, Hinck AP, Loh SN, Markley JL. Two-dimensional NMR studies of staphylococcal nuclease. 2. Sequence-specific assignments of carbon-13 and nitrogen-15 signals from the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex. Biochemistry. 29: 102-13. PMID 2322533 DOI: 10.1021/Bi00453A012  0.766
1990 Zehfus MH, Reily MD, Ulrich EL, Westler WM, Markley JL. 1H, 13C, and 15N resonance assignments for a ferrocytochrome c553 heme by multinuclear NMR spectroscopy. Archives of Biochemistry and Biophysics. 276: 369-73. PMID 2154947 DOI: 10.1016/0003-9861(90)90734-G  0.375
1990 Stockman BJ, Krezel AM, Markley JL, Leonhardt KG, Straus NA. Hydrogen-1, carbon-13, and nitrogen-15 NMR spectroscopy of Anabaena 7120 flavodoxin: assignment of beta-sheet and flavin binding site resonances and analysis of protein-flavin interactions. Biochemistry. 29: 9600-9. PMID 2125478 DOI: 10.1021/Bi00493A014  0.824
1990 Paulsen KE, Stankovich MT, Stockman BJ, Markley JL. Redox and spectral properties of flavodoxin from Anabaena 7120. Archives of Biochemistry and Biophysics. 280: 68-73. PMID 2112901 DOI: 10.1016/0003-9861(90)90519-5  0.636
1990 Wang JF, LeMaster DM, Markley JL. Two-dimensional NMR studies of staphylococcal nuclease. 1. Sequence-specific assignments of hydrogen-1 signals and solution structure of the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex. Biochemistry. 29: 88-101. PMID 2108720 DOI: 10.1021/Bi00453A011  0.427
1990 Hinck AP, Loh SN, Wang J, Markley JL. Histidine 121 of staphylococcal nuclease. Correction of the H(δ2) 1H NMR assignment and reinterpretation of the role this residue plays in conformational heterogeneity of the protein Journal of the American Chemical Society. 112: 9031-9034. DOI: 10.1021/Ja00181A001  0.718
1990 Fejzo J, Westler WM, Macura S, Markley JL. Elimination of cross-relaxation effects from two-dimensional chemical-exchange spectra of macromolecules Journal of the American Chemical Society. 112: 2574-2577. DOI: 10.1021/Ja00163A014  0.312
1990 Alexandrescu AT, Loh SN, Markley JL. Chemical exchange spectroscopy based on carbon-13 NMR. Applications to enzymology and protein folding Journal of Magnetic Resonance (1969). 87: 523-535. DOI: 10.1016/0022-2364(90)90309-W  0.763
1990 Zolnai Z, Westler WM, Ulrich EL, Markley JL. Drafting table and light-box software for multidimensional NMR spectral analysis (PIXI). The personal computer workstation Journal of Magnetic Resonance (1969). 88: 511-522. DOI: 10.1016/0022-2364(90)90285-H  0.305
1990 Fejzo J, Zolnai Z, Macura S, Markley JL. Quantitative evaluation of two-dimensional cross-relaxation NMR spectra of proteins. Interproton distances in Turkey ovomucoid third domain Journal of Magnetic Resonance (1969). 88: 93-110. DOI: 10.1016/0022-2364(90)90111-L  0.376
1989 Alexandrescu AT, Ulrich EL, Markley JL. Hydrogen-1 NMR evidence for three interconverting forms of staphylococcal nuclease: effects of mutations and solution conditions on their distribution. Biochemistry. 28: 204-11. PMID 2706243 DOI: 10.1021/Bi00427A028  0.677
1989 Markley JL. Two-dimensional nuclear magnetic resonance spectroscopy of proteins: an overview. Methods in Enzymology. 176: 12-64. PMID 2682139 DOI: 10.1016/0076-6879(89)76004-3  0.445
1989 Grissom CB, Markley JL. Staphylococcal nuclease active-site amino acids: pH dependence of tyrosines and arginines by 13C NMR and correlation with kinetic studies. Biochemistry. 28: 2116-24. PMID 2655703 DOI: 10.1021/Bi00431A023  0.686
1989 Oh BH, Markley JL. Complete 13C resonance assignments of tryptophan in L-lysyl-L-tryptophyl-L-lysine by single-bond and multiple-bond correlated 1H-13C two-dimensional NMR. Biopolymers. 28: 1833-7. PMID 2597735 DOI: 10.1002/Bip.360281015  0.529
1989 Stockman BJ, Reily MD, Westler WM, Ulrich EL, Markley JL. Concerted two-dimensional NMR approaches to hydrogen-1, carbon-13, and nitrogen-15 resonance assignments in proteins. Biochemistry. 28: 230-6. PMID 2539856 DOI: 10.1021/Bi00427A032  0.688
1989 Oh BH, Westler WM, Markley JL. Carbon-13-spin-system-directed strategy for assigning cross peaks in the COSY fingerprint region of a protein Journal of the American Chemical Society. 111: 3083-3085. DOI: 10.1021/Ja00190A063  0.509
1989 Alexandrescu AT, Ulrich EL, Markley JL. Hydrogen-1 NMR evidence for three interconverting forms of staphylococcal nuclease: effects of mutations and solution conditions on their distribution [Erratum to document cited in CA110(5):36063b] Biochemistry. 28: 3628-3628. DOI: 10.1021/Bi00434A075  0.613
1989 Mooberry ES, Oh BH, Markley JL. Improvement of 13C15N chemical-shift correlation spectroscopy by implementing time proportional phase incrementation Journal of Magnetic Resonance (1969). 85: 147-149. DOI: 10.1016/0022-2364(89)90328-4  0.492
1989 Fejzo J, Zolnai Z, Macura S, Markley JL. Analysis of laboratory-frame and rotating-frame cross-relaxation buildup rates from macromolecules Journal of Magnetic Resonance (1969). 82: 518-528. DOI: 10.1016/0022-2364(89)90215-1  0.326
1989 Zolnai Z, Macura S, Markley JL. Spline method for correcting baseplane distortions in two-dimensional NMR spectra Journal of Magnetic Resonance (1969). 82: 496-504. DOI: 10.1016/0022-2364(89)90213-8  0.339
1988 Westler WM, Stockman BJ, Hosoya Y, Miyake Y, Kainosho M, Markley JL. Correlation of carbon-13 and nitrogen-15 chemical shifts in selectively and uniformly labeled proteins by heteronuclear two-dimensional NMR spectroscopy. Journal of the American Chemical Society. 110: 6256-8. PMID 22148817 DOI: 10.1021/Ja00226A057  0.687
1988 Rhyu GI, Markley JL. Two-dimensional NMR studies of Kazal proteinase inhibitors. 2. Sequence-specific assignments and secondary structure of reactive site modified turkey ovomucoid third domain. Biochemistry. 27: 2529-39. PMID 3382637 DOI: 10.1021/Bi00407A040  0.826
1988 Alexandrescu AT, Mills DA, Ulrich EL, Chinami M, Markley JL. NMR assignments of the four histidines of staphylococcal nuclease in native and denatured states. Biochemistry. 27: 2158-65. PMID 3288282 DOI: 10.1021/Bi00406A051  0.69
1988 Robertson AD, Westler WM, Markley JL. Two-dimensional NMR studies of Kazal proteinase inhibitors. 1. Sequence-specific assignments and secondary structure of turkey ovomucoid third domain. Biochemistry. 27: 2519-29. PMID 3164216 DOI: 10.1021/Bi00407A039  0.616
1988 Oh BH, Westler WM, Darba P, Markley JL. Protein carbon-13 spin systems by a single two-dimensional nuclear magnetic resonance experiment. Science (New York, N.Y.). 240: 908-11. PMID 3129784 DOI: 10.1126/Science.3129784  0.553
1988 Stockman BJ, Westler WM, Mooberry ES, Markley JL. Flavodoxin from Anabaena 7120: uniform nitrogen-15 enrichment and hydrogen-1, nitrogen-15, and phosphorus-31 NMR investigations of the flavin mononucleotide binding site in the reduced and oxidized states. Biochemistry. 27: 136-42. PMID 3126808 DOI: 10.1021/Bi00401A021  0.703
1988 Stockman BJ, Westler WM, Darba P, Markley JL. Detailed analysis of carbon-13 NMR spin systems in a uniformly carbon-13 enriched protein: flavodoxin from Anabaena 7120 Journal of the American Chemical Society. 110: 4095-4096. DOI: 10.1021/Ja00220A091  0.657
1988 McCain DC, Ulrich EL, Markley JL. NMR relaxation study of internal motions in Staphylococcal nuclease Journal of Magnetic Resonance (1969). 80: 296-305. DOI: 10.1016/0022-2364(88)90298-3  0.327
1988 Zolnai Z, Macura S, Markley JL. Compression of NMR data. Application to two-dimensional NMR spectroscopy and imaging Journal of Magnetic Resonance (1969). 80: 60-70. DOI: 10.1016/0022-2364(88)90057-1  0.331
1988 STOCKMAN BJ, WESTLER WM, DARBA P, MARKLEY JL. ChemInform Abstract: Detailed Analysis of 13C NMR Spin Systems in a Uniformly 13C Enriched Protein: Flavodoxin from Anabaena 7120. Cheminform. 19. DOI: 10.1002/chin.198839290  0.652
1987 Markley JL. NMR in Biology and Medicine edited by Shu Chien and Chien Ho Medical Physics. 14: 891-892. DOI: 10.1118/1.596021  0.325
1986 McCain DC, Markley JL. A theory and a model for interpreting the proton nuclear magnetic resonance spectra of water in plant leaves. Biophysical Journal. 48: 687-94. PMID 4074830 DOI: 10.1016/S0006-3495(85)83826-1  0.313
1986 Krishnamoorthi R, Markley JL, Cusanovich MA, Przysiecki CT, Meyer TE. Hydrogen-1 nuclear magnetic resonance investigation of high-potential iron-sulfur proteins from Ectothiorhodospira halophila and Ectothiorhodospira vacuolata: A comparative study of hyperfine-shifted resonances Biochemistry. 25: 60-67. PMID 3954994 DOI: 10.1021/Bi00349A010  0.412
1986 Krishnamoorthi R, Markley JL, Cusancvich MA, Przysiecki CT. Hydrogen-1 nuclear magnetic resonance investigation of Clostridium pasteurianum rubredoxin: Previously unobserved signals Biochemistry. 25: 50-54. PMID 3954992 DOI: 10.1021/Bi00349A008  0.389
1986 McCain DC, Markley JL. The solution conformation of sucrose: concentration and temperature dependence. Carbohydrate Research. 152: 73-80. PMID 3768917 DOI: 10.1016/S0008-6215(00)90288-X  0.342
1986 Markley JL, Croll DH, Krishnamoorthi R, Ortiz-Polo G, Westler WM, Bogard WC, Laskowski M. One- and two-dimensional NMR spectral analysis of the consequences of single amino acid replacements in proteins. Journal of Cellular Biochemistry. 30: 291-309. PMID 3711152 DOI: 10.1002/Jcb.240300403  0.796
1986 Arús C, Westler WM, Bárány M, Markley JL. Observation of the terminal methyl group in fatty acids of the linolenic series by a new 1H NMR pulse sequence providing spectral editing and solvent suppression. Application to excised frog muscle and rat brain. Biochemistry. 25: 3346-51. PMID 3488077 DOI: 10.1021/Bi00359A038  0.314
1986 McCain DC, Markley JL. Rotational spectral density functions for aqueous sucrose: experimental determination using carbon-13 NMR Journal of the American Chemical Society. 108: 4259-4264. DOI: 10.1021/Ja00275A003  0.305
1986 Ortiz-Polo G, Krishnamoorthi R, Markley JL, Live DH, Davis DG, Cowburn D. Natural-abundance 15N NMR studies of Turkey ovomucoid third domain. Assignment of peptide 15N resonances to the residues at the reactive site region via proton-detected multiple-quantum coherence Journal of Magnetic Resonance (1969). 68: 303-310. DOI: 10.1016/0022-2364(86)90246-5  0.414
1986 Tobias B, Markley JL. Carbon-13 NMR relaxation of [I-13C]acetyl-chymotrypsin dissolved in a cryosolvent at subzero temperatures Journal of Magnetic Resonance (1969). 69: 381-385. DOI: 10.1016/0022-2364(86)90092-2  0.588
1985 Virudachalam R, Harrington M, Johnson JE, Markley JL. 1H, 13C, and 31P nuclear magnetic resonance studies of cowpea mosaic virus: detection and exchange of polyamines and dynamics of the RNA. Virology. 141: 43-50. PMID 3976178 DOI: 10.1016/0042-6822(85)90181-3  0.346
1985 Ulrich EL, Girvin ME, Cramer WA, Markley JL. Location and mobility of ubiquinones of different chain lengths in artificial membrane vesicles Biochemistry. 24: 2501-2508. PMID 3839413 DOI: 10.1021/Bi00331A016  0.343
1985 Rhyu GI, Ray WJ, Markley JL. Multinuclear magnetic resonance studies of metal ion binding sites of phosphoglucomutase. Biochemistry. 24: 2536-41. PMID 2990531 DOI: 10.1021/Bi00331A021  0.785
1985 Rhyu GI, Ray WJ, Markley JL. Active-site serine phosphate and histidine residues of phosphoglucomutase: pH titration studies monitored by 1H and 31P NMR spectroscopy. Biochemistry. 24: 4746-53. PMID 2934085 DOI: 10.1021/Bi00339A006  0.799
1985 Live DH, Kojiro CL, Cowburn D, Markley JL. Identification of proton NMR signals from the metal ligands in cadmium-substituted plastocyanin via two-dimensional multiple-quantum detection in the absence of explicitly resolved proton-cadmium-113 coupling Journal of the American Chemical Society. 107: 3043-3045. DOI: 10.1021/Ja00297A008  0.784
1984 Markley JL, Westler WM, Chan TM, Kojiro CL, Ulrich EL. Two-dimensional NMR approaches to the study of protein structure and function. Federation Proceedings. 43: 2648-56. PMID 6430721  0.818
1984 Rhyu GI, Ray WJ, Markley JL. Enzyme-bound intermediates in the conversion of glucose 1-phosphate to glucose 6-phosphate by phosphoglucomutase. Phosphorus NMR studies. Biochemistry. 23: 252-60. PMID 6230103 DOI: 10.1021/Bi00297A013  0.779
1984 Westler WM, Ortiz-polo G, Markley JL. Two-Dimensional 1H13C chemical-shift correlated spectroscopy of a protein at natural abundance Journal of Magnetic Resonance (1969). 58: 354-357. DOI: 10.1016/0022-2364(84)90228-2  0.361
1984 Wu X, Westler WM, Markley JL. The assignment of imidazolium N-1H peaks in the 1H NMR spectrum of a protein by one- and two-dimensional NOE experiments Journal of Magnetic Resonance (1969). 59: 524-529. DOI: 10.1016/0022-2364(84)90089-1  0.36
1983 McCain DC, Virudachalam R, Santini RE, Abdel-Meguid SS, Markley JL. Phosphorus-31 nuclear magnetic resonance study of internal motion in ribonucleic acid of southern bean mosaic virus. Biochemistry. 21: 5390-7. PMID 6816273 DOI: 10.1021/Bi00265A002  0.301
1983 Ulrich EL, John EMM, Gough GR, Brunden MJ, Gilham PT, Westler WM, Markley JL. Imino proton assignments in the proton nuclear magnetic resonance spectrum of the λ phage OR3 deoxyribonucleic acid fragment Biochemistry. 22: 4362-4365. PMID 6226312 DOI: 10.1021/Bi00288A003  0.359
1983 Chan TM, Markley JL. Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 5. Hyperfine-shifted peaks in proton and carbon-13 spectra Biochemistry. 22: 6008-6010. DOI: 10.1021/Bi00294A048  0.315
1983 Chan TM, Ulrich EL, Markley JL. Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 4. Interactions with redox partners Biochemistry. 22: 6002-6007. DOI: 10.1021/Bi00294A047  0.308
1983 Chan TM, Markley JL. Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 3. Heteronuclear (carbon-13, proton) two-dimensional NMR spectra, 13C peak assignments, and 13C relaxation measurements Biochemistry. 22: 5996-6002. DOI: 10.1021/Bi00294A046  0.355
1983 Chan TM, Hermodson MA, Ulrich EL, Markley JL. Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 2. Determination of the sequence of Anabaena variabilis ferredoxin II, assignment of aromatic resonances in proton spectra, and effects of chemical modifications Biochemistry. 22: 5988-5995. DOI: 10.1021/Bi00294A045  0.333
1983 Chan TM, Markley JL. Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 1. Properties of the histidine residues Biochemistry. 22: 5982-5987. DOI: 10.1021/Bi00294A044  0.408
1983 Ulrich EL, Westler WM, Markley JL. Reassignments in the 1H NMR spectrum of flavin adenine dinucleotide by two-dimensional homonuclear chemical shift correlation Tetrahedron Letters. 24: 473-476. DOI: 10.1016/S0040-4039(00)81440-9  0.382
1983 Kojiro CL, Markley JL. Connectivity of proton and carbon spectra of the blue copper protein, plastocyanin, established by two-dimensional nuclear magnetic resonance Febs Letters. 162: 52-56. DOI: 10.1016/0014-5793(83)81047-3  0.816
1982 Ogino T, Croll DH, Kato I, Markley JL. Properties of conserved amino acid residues in tandem homologous protein domains. Hydrogen-1 nuclear magnetic resonance studies of the histidines of chicken ovomucoid. Biochemistry. 21: 3452-60. PMID 7115679 DOI: 10.1021/Bi00257A031  0.814
1982 Westler WM, Markley JL, Bachovchin WW. Proton NRM spectroscopy of the active site histidine of α-lytic proteinase. Effects of adjacent 13C and 15N labels Febs Letters. 138: 233-235. PMID 7040114 DOI: 10.1016/0014-5793(82)80449-3  0.311
1982 Blaszak JA, Ulrich EL, Markley JL, McMillin DR. High-resolution proton nuclear magnetic resonance studies of the nickel(II) derivative of azurin. Biochemistry. 21: 6253-8. PMID 6817786 DOI: 10.1021/Bi00267A033  0.341
1982 Markley JL, Travers F, Balny C. Lack of evidence for a tetrahedral intermediate in the hydrolysis of nitroanilide substrates by serine proteinases. Subzero-temperature stopped-flow experiments. European Journal of Biochemistry. 120: 477-85. PMID 6460615 DOI: 10.1111/J.1432-1033.1981.Tb05726.X  0.307
1982 Ogino T, Garner C, Markley JL, Herrmann KM. Biosynthesis of aromatic compounds: 13C NMR spectroscopy of whole Escherichia coli cells Proceedings of the National Academy of Sciences of the United States of America. 79: 5828-5832. PMID 6136965 DOI: 10.1073/Pnas.79.19.5828  0.504
1982 Chan TM, Markley JL. Heteronuclear (proton, carbon-13) two-dimensional chemical shift correlation NMR spectroscopy of a protein. Ferredoxin from Anabaena variabilis Journal of the American Chemical Society. 104: 4010-4011. DOI: 10.1021/Ja00378A041  0.381
1982 Chan TM, Westler WM, Santini RE, Markley JL. Carbon-13 NMR subspectra of a protein based on the number of attached protons. Ferredoxin from Anabaena variabilis Journal of the American Chemical Society. 104: 4008-4010. DOI: 10.1021/Ja00378A040  0.356
1982 SALLAM MAE, HEGAZY EIA, WHISTLER RL, MARKLEY JL, CROLL DH. ChemInform Abstract: Studies on 3-Epimeric L-2-Hexulose-phenylosazones. Structure and Anomeric Con- figuration of the 3,6-Anhydroosazone Derivatives Obtained from L-xylo- and L-lyxo- 2-Hexulose-phenylosazone. Chemischer Informationsdienst. 13. DOI: 10.1002/chin.198250305  0.72
1982 Sallam MAE, Hegazy EIA, Whistler RL, Markley JL, Croll DH. Studies on 3-epimeric l-2-hexulose phenylosazones. Structure and anomeric configuration of the 3,6-anhydro-osazone derivatives obtained from l-xylo- and l-lyxo-2-hexulose phenylosazone Carbohydrate Research. 102: 197-206. DOI: 10.1002/Chin.198250305  0.735
1979 Markley JL. Hydrogen bonds in serine proteinases and their complexes with protein proteinase inhibitors. Proton nuclear magnetic resonance studies. Biochemistry. 17: 4648-56. PMID 569493 DOI: 10.1021/Bi00615A010  0.346
1979 Porubcan MA, Westler WM, Ibañez IB, Markley JL. (Diisopropylphosphoryl)serine proteinases. Proton and phosphorus-31 nuclear magnetic resonance-pH titration studies. Biochemistry. 18: 4108-16. PMID 39591 DOI: 10.1021/Bi00586A008  0.784
1978 Porubcan MA, Neves DE, Rausch SK, Markley JL. Active site in zymogens. Proton magnetic resonance pH titration curves of histidine-57 in porcine and bovine trypsinogens and in their complexes with bovine pancreatic trypsin inhibitor (Kunitz). Biochemistry. 17: 4640-7. PMID 31899 DOI: 10.1021/Bi00615A009  0.784
1978 Markley JL, Ibañez IB. Zymogen activation in serine proteinases. Proton magnetic resonance pH titration studies of the two histidines of bovine chymotrypsinogen A and chymotrypsin Aalpha. Biochemistry. 17: 4627-40. PMID 31898 DOI: 10.1021/Bi00615A008  0.394
1978 Ulrich EL, Markley JL. Blue-copper proteins: nuclear magnetic resonance investigations Coordination Chemistry Reviews. 27: 109-140. DOI: 10.1016/S0010-8545(00)80356-2  0.377
1977 Markley JL, Ulrich EL, Krogmann DW. Spinach plastocyanin: Comparison of reduced and oxidized forms by natural abundance carbon-13 nuclear magnetic resonance spectroscopy Biochemical and Biophysical Research Communications. 78: 106-114. PMID 907662 DOI: 10.1016/0006-291X(77)91227-X  0.329
1976 Markley JL, Porubcan MA. The charge-relay system of serine proteinases: proton magnetic resonance titration studies of the four histidines of porcine trypsin. Journal of Molecular Biology. 102: 487-509. PMID 5610 DOI: 10.1016/0022-2836(76)90330-2  0.807
1975 Markley JL. High-resolution proton magnetic resonance spectroscopy of selectively deuterated enzymes. Methods in Enzymology. 26: 605-27. PMID 4680726 DOI: 10.1016/S0076-6879(72)26028-1  0.347
1975 Markley JL, Ulrich EL, Berg SP, Krogmann DW. Nuclear magnetic resonance studies of the copper binding sites of blue copper proteins: Oxidized, reduced, and apoplastocyanin Biochemistry. 14: 4428-4433. PMID 809054 DOI: 10.1021/Bi00691A014  0.407
1975 Markley JL, Finkenstadt WR. Correlation proton magnetic resonance studies at 250 MHz of bovine pancreatic ribonuclease. III. Mutual electrostatic interaction between histidine residues 12 and 119. Biochemistry. 14: 3562-6. PMID 240383 DOI: 10.1021/Bi00687A008  0.391
1975 Markley JL. Correlation proton magnetic resonance studies at 250 MHz of bovine pancreatic ribonuclease. I. Reinvestigation of the histidine peak assignments. Biochemistry. 14: 3546-54. PMID 240382 DOI: 10.1021/Bi00687A006  0.384
1975 Markley JL, Kato I. Assignment of the histidine proton magnetic resonance peaks of soybean trypsin inhibitor (kunitz) by a differertial deuterium exchange technique Biochemistry. 14: 3234-3237. PMID 238587 DOI: 10.1021/Bi00685A032  0.369
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