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Alexander Pak - Publications

Affiliations: 
Chemical Engineering University of Texas at Austin, Austin, Texas, U.S.A. 
Area:
Theoretical Chemistry, Computational Materials
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40 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Peng Y, Pak AJ, Durumeric AEP, Sahrmann PG, Mani S, Jin J, Loose TD, Beiter J, Voth GA. OpenMSCG: A Software Tool for Bottom-Up Coarse-Graining. The Journal of Physical Chemistry. B. 127: 8537-8550. PMID 37791670 DOI: 10.1021/acs.jpcb.3c04473  0.531
2023 Gupta M, Pak AJ, Voth GA. Critical mechanistic features of HIV-1 viral capsid assembly. Science Advances. 9: eadd7434. PMID 36608139 DOI: 10.1126/sciadv.add7434  0.411
2022 Jin J, Pak AJ, Durumeric AEP, Loose TD, Voth GA. Bottom-up Coarse-Graining: Principles and Perspectives. Journal of Chemical Theory and Computation. 18: 5759-5791. PMID 36070494 DOI: 10.1021/acs.jctc.2c00643  0.388
2022 Pak AJ, Gupta M, Yeager M, Voth GA. Inositol Hexakisphosphate (IP6) Accelerates Immature HIV-1 Gag Protein Assembly toward Kinetically Trapped Morphologies. Journal of the American Chemical Society. 144: 10417-10428. PMID 35666943 DOI: 10.1021/jacs.2c02568  0.42
2022 Kim S, Chung J, Arlt H, Pak AJ, Farese RV, Walther TC, Voth GA. Seipin transmembrane segments critically function in triglyceride nucleation and lipid droplet budding from the membrane. Elife. 11. PMID 35583926 DOI: 10.7554/eLife.75808  0.383
2022 Pak AJ, Yu A, Ke Z, Briggs JAG, Voth GA. Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core. Nature Communications. 13: 1002. PMID 35194049 DOI: 10.1038/s41467-022-28654-5  0.704
2021 Pak AJ, Purdy MD, Yeager M, Voth GA. Preservation of HIV-1 Gag Helical Bundle Symmetry by Bevirimat Is Central to Maturation Inhibition. Journal of the American Chemical Society. 143: 19137-19148. PMID 34739240 DOI: 10.1021/jacs.1c08922  0.407
2021 Pak AJ, Yu A, Ke Z, Briggs JAG, Voth GA. Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core. Biorxiv : the Preprint Server For Biology. PMID 34127973 DOI: 10.1101/2021.05.24.445443  0.705
2021 Jin J, Han Y, Pak AJ, Voth GA. A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). I. General theory and model. The Journal of Chemical Physics. 154: 044104. PMID 33514116 DOI: 10.1063/5.0026651  0.366
2021 Jin J, Pak AJ, Han Y, Voth GA. A new one-site coarse-grained model for water: Bottom-up many-body projected water (BUMPer). II. Temperature transferability and structural properties at low temperature. The Journal of Chemical Physics. 154: 044105. PMID 33514078 DOI: 10.1063/5.0026652  0.355
2021 Tan A, Pak AJ, Morado DR, Voth GA, Briggs JAG. Immature HIV-1 assembles from Gag dimers leaving partial hexamers at lattice edges as potential substrates for proteolytic maturation. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33397805 DOI: 10.1073/pnas.2020054118  0.387
2020 Yu A, Pak AJ, He P, Monje-Galvan V, Casalino L, Gaieb Z, Dommer AC, Amaro RE, Voth GA. A Multiscale Coarse-grained Model of the SARS-CoV-2 Virion. Biophysical Journal. PMID 33253634 DOI: 10.1016/j.bpj.2020.10.048  0.717
2020 Jarin Z, Pak AJ, Bassereau P, Voth GA. Lipid-composition mediated forces can stabilize tubular assemblies of I-BAR proteins. Biophysical Journal. PMID 33248130 DOI: 10.1016/j.bpj.2020.11.019  0.351
2020 Yu A, Pak AJ, He P, Monje-Galvan V, Casalino L, Gaieb Z, Dommer AC, Amaro RE, Voth GA. A Multiscale Coarse-grained Model of the SARS-CoV-2 Virion. Biorxiv : the Preprint Server For Biology. PMID 33024966 DOI: 10.1101/2020.10.02.323915  0.717
2020 Flower TG, Takahashi Y, Hudait A, Rose K, Tjahjono N, Pak AJ, Yokom AL, Liang X, Wang HG, Bouamr F, Voth GA, Hurley JH. A helical assembly of human ESCRT-I scaffolds reverse-topology membrane scission. Nature Structural & Molecular Biology. PMID 32424346 DOI: 10.1038/S41594-020-0426-4  0.367
2020 Yu A, Skorupka KA, Pak AJ, Ganser-Pornillos BK, Pornillos O, Voth GA. TRIM5α self-assembly and compartmentalization of the HIV-1 viral capsid. Nature Communications. 11: 1307. PMID 32161265 DOI: 10.1038/S41467-020-15106-1  0.716
2020 Yu A, Skorupka K, Pak A, Ganser-Pornillos BK, Pornillos O, Voth GA. Coarse-Grained Molecular Dynamics Simulations of TRIM5α Self-Assembly and Restriction of HIV Biophysical Journal. 118. DOI: 10.1016/J.Bpj.2019.11.2840  0.447
2019 Jarin Z, Tsai FC, Davtyan A, Pak AJ, Bassereau P, Voth GA. Unusual Organization of I-BAR Proteins on Tubular and Vesicular Membranes. Biophysical Journal. PMID 31349990 DOI: 10.1016/J.Bpj.2019.06.025  0.347
2019 Jin J, Pak AJ, Voth GA. Understanding Missing Entropy in Coarse-Grained Systems: Addressing Issues of Representability and Transferability. The Journal of Physical Chemistry Letters. PMID 31319036 DOI: 10.1021/Acs.Jpclett.9B01228  0.404
2019 Pak AJ, Grime JMA, Yu A, Voth GA. Off-Pathway Assembly: A Broad-Spectrum Mechanism of Action for Drugs That Undermine Controlled HIV-1 Viral Capsid Formation. Journal of the American Chemical Society. PMID 31244184 DOI: 10.1021/Jacs.9B01413  0.697
2019 Pak AJ, Dannenhoffer-Lafage T, Madsen JJ, Voth GA. Systematic Coarse-Grained Lipid Force-Fields with Semi-Explicit Solvation via Virtual Sites. Journal of Chemical Theory and Computation. PMID 30702887 DOI: 10.1021/Acs.Jctc.8B01033  0.391
2018 Pak AJ, Voth GA. Advances in coarse-grained modeling of macromolecular complexes. Current Opinion in Structural Biology. 52: 119-126. PMID 30508766 DOI: 10.1016/J.Sbi.2018.11.005  0.398
2017 Pak AJ, Grime JMA, Sengupta P, Chen AK, Durumeric AEP, Srivastava A, Yeager M, Briggs JAG, Lippincott-Schwartz J, Voth GA. Immature HIV-1 lattice assembly dynamics are regulated by scaffolding from nucleic acid and the plasma membrane. Proceedings of the National Academy of Sciences of the United States of America. PMID 29114055 DOI: 10.1073/Pnas.1706600114  0.394
2016 Wei W, Chang L, Sun K, Pak AJ, Paek E, Hwang GS, Hu YH. The Bright Future for Electrode Materials of Energy Devices: Highly Conductive Porous Na-Embedded Carbon. Nano Letters. 16: 8029-8033. PMID 27960513 DOI: 10.1021/Acs.Nanolett.6B04742  0.711
2016 Pak AJ, Hwang GS. Molecular Insights into the Complex Relationship between Capacitance and Pore Morphology in Nanoporous Carbon-based Supercapacitors. Acs Applied Materials & Interfaces. PMID 27936557 DOI: 10.1021/Acsami.6B11192  0.485
2016 Lee Y, Pak AJ, Hwang GS. What is the thermal conductivity limit of silicon germanium alloys? Physical Chemistry Chemical Physics : Pccp. PMID 27398924 DOI: 10.1039/C6Cp04388G  0.562
2015 Wu D, Pak AJ, Liu Y, Zhou Y, Wu X, Zhu Y, Lin M, Han Y, Ren Y, Peng H, Tsai YH, Hwang GS, Lai K. Thickness-dependent Dielectric Constant of Few-layer In2Se3 Nano-flakes. Nano Letters. PMID 26575786 DOI: 10.1021/Acs.Nanolett.5B03575  0.438
2015 Paek E, Pak AJ, Hwang GS. On the influence of polarization effects in predicting the interfacial structure and capacitance of graphene-like electrodes in ionic liquids. The Journal of Chemical Physics. 142: 024701. PMID 25591371 DOI: 10.1063/1.4905328  0.737
2015 Lee Y, Pak AJ, Paek E, Hwang GS. Principal role of contact-force distribution in determining the thermal conductivity of supported graphene Physical Review Applied. 4. DOI: 10.1103/Physrevapplied.4.014006  0.748
2014 Pak AJ, Paek E, Hwang GS. Correction: Relative contributions of quantum and double layer capacitance to the supercapacitor performance of carbon nanotubes in an ionic liquid. Physical Chemistry Chemical Physics : Pccp. 16: 20248-9. PMID 26037374 DOI: 10.1039/c4cp90113d  0.701
2014 Paek E, Pak AJ, Hwang GS. Large capacitance enhancement induced by metal-doping in graphene-based supercapacitors: a first-principles-based assessment. Acs Applied Materials & Interfaces. 6: 12168-76. PMID 24983127 DOI: 10.1021/Am501395J  0.745
2014 Paek E, Pak AJ, Hwang GS. Erratum: A Computational Study of the Interfacial Structure and Capacitance of Graphene in [BMIM][PF6] Ionic Liquid [J. Electrochem. Soc., 160, A1 (2013)] Journal of the Electrochemical Society. 161: X15-X15. DOI: 10.1149/2.0701409Jes  0.729
2014 Pak AJ, Paek E, Hwang GS. Impact of Graphene Edges on Enhancing the Performance of Electrochemical Double Layer Capacitors The Journal of Physical Chemistry C. 118: 21770-21777. DOI: 10.1021/JP504458Z  0.699
2014 Pak AJ, Paek E, Hwang GS. Corrigendum to ‘Tailoring the performance of graphene-based supercapacitors using topological defects: A theoretical assessment’ [CARBON volume 68 (2014) 734–741] Carbon. 77: 1198. DOI: 10.1016/J.Carbon.2014.06.032  0.731
2014 Pak AJ, Paek E, Hwang GS. Tailoring the performance of graphene-based supercapacitors using topological defects: A theoretical assessment Carbon. 68: 734-741. DOI: 10.1016/J.Carbon.2013.11.057  0.75
2013 Pak AJ, Paek E, Hwang GS. Relative contributions of quantum and double layer capacitance to the supercapacitor performance of carbon nanotubes in an ionic liquid. Physical Chemistry Chemical Physics : Pccp. 15: 19741-7. PMID 24141286 DOI: 10.1039/C4Cp90113D  0.742
2013 Paek E, Pak AJ, Hwang GS. A computational study of the interfacial structure and capacitance of graphene in [BMIM][PF6] ionic liquid Journal of the Electrochemical Society. 160: A1-A10. DOI: 10.1149/2.019301Jes  0.734
2013 Paek E, Pak AJ, Hwang GS. Curvature effects on the interfacial capacitance of carbon nanotubes in an ionic liquid Journal of Physical Chemistry C. 117: 23539-23546. DOI: 10.1021/Jp408085W  0.722
2013 Paek E, Pak AJ, Kweon KE, Hwang GS. Correction to “On the Origin of the Enhanced Supercapacitor Performance of Nitrogen-Doped Graphene” The Journal of Physical Chemistry C. 117: 14461-14461. DOI: 10.1021/Jp405952E  0.691
2013 Paek E, Pak AJ, Kweon KE, Hwang GS. On the origin of the enhanced supercapacitor performance of nitrogen-doped graphene Journal of Physical Chemistry C. 117: 5610-5616. DOI: 10.1021/Jp312490Q  0.757
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