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Chloe Zubieta, Ph.D. - Publications

Affiliations: 
2002 University of California, San Diego, La Jolla, CA 
Area:
transcription, signaling, pre-mRNA splicing, mRNA transport, protein-protein, protein-DNA and protein-RNA interactions
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Lai X, Stigliani A, Lucas J, Hugouvieux V, Parcy F, Zubieta C. Genome-wide binding of SEPALLATA3 and AGAMOUS complexes determined by sequential DNA-affinity purification sequencing. Nucleic Acids Research. PMID 32890394 DOI: 10.1093/Nar/Gkaa729  0.334
2020 Jung JH, Barbosa AD, Hutin S, Kumita JR, Gao M, Derwort D, Silva CS, Lai X, Pierre E, Geng F, Kim SB, Baek S, Zubieta C, Jaeger KE, Wigge PA. A prion-like domain in ELF3 functions as a thermosensor in Arabidopsis. Nature. PMID 32848244 DOI: 10.1038/S41586-020-2644-7  0.356
2020 Lai X, Chahtane H, Martin-Arevalillo R, Zubieta C, Parcy F. Contrasted evolutionary trajectories of plant transcription factors. Current Opinion in Plant Biology. 54: 101-107. PMID 32417720 DOI: 10.1016/J.Pbi.2020.03.002  0.348
2019 Holland CK, Westfall CS, Schaffer JE, De Santiago A, Zubieta C, Alvarez S, Jez JM. Brassicaceae-specific Gretchen Hagen 3 acyl acid amido synthetases conjugate amino acids to chorismate, a precursor of aromatic amino acids and salicylic acid. The Journal of Biological Chemistry. PMID 31575658 DOI: 10.1074/Jbc.Ra119.009949  0.339
2019 Lai X, Daher H, Galien A, Hugouvieux V, Zubieta C. Structural Basis for Plant MADS Transcription Factor Oligomerization. Computational and Structural Biotechnology Journal. 17: 946-953. PMID 31360333 DOI: 10.1016/J.Csbj.2019.06.014  0.416
2019 Vassal-Stermann E, Effantin G, Zubieta C, Burmeister W, Iseni F, Wang H, Lieber A, Schoehn G, Fender P. CryoEM structure of adenovirus type 3 fibre with desmoglein 2 shows an unusual mode of receptor engagement. Nature Communications. 10: 1181. PMID 30862836 DOI: 10.1038/S41467-019-09220-Y  0.329
2018 Lai X, Stigliani A, Vachon G, Carles C, Smaczniak C, Zubieta C, Kaufmann K, Parcy F. Building transcription factor binding site models to understand gene regulation in plants. Molecular Plant. PMID 30447332 DOI: 10.1016/J.Molp.2018.10.010  0.355
2018 Fellows R, Russo CM, Silva CS, Lee SG, Jez JM, Chisholm JD, Zubieta C, Nanao MH. A multisubstrate reductase from Plantago major: structure-function in the short chain reductase superfamily. Scientific Reports. 8: 14796. PMID 30287897 DOI: 10.1038/S41598-018-32967-1  0.402
2018 Lai X, Bazin J, Webb S, Crespi M, Zubieta C, Conn SJ. CircRNAs in Plants. Advances in Experimental Medicine and Biology. 1087: 329-343. PMID 30259378 DOI: 10.1007/978-981-13-1426-1_26  0.366
2018 Lai X, Verhage L, Hugouvieux V, Zubieta C. Pioneer Factors in Animals and Plants-Colonizing Chromatin for Gene Regulation. Molecules (Basel, Switzerland). 23. PMID 30065231 DOI: 10.3390/Molecules23081914  0.36
2018 Vassal-Stermann E, Mottet M, Ducournau C, Iseni F, Vragniau C, Wang H, Zubieta C, Lieber A, Fender P. Mapping of Adenovirus of serotype 3 fibre interaction to desmoglein 2 revealed a novel 'non-classical' mechanism of viral receptor engagement. Scientific Reports. 8: 8381. PMID 29849084 DOI: 10.1038/S41598-018-26871-X  0.313
2018 Hugouvieux V, Silva CS, Jourdain A, Stigliani A, Charras Q, Conn V, Conn SJ, Carles CC, Parcy F, Zubieta C. Tetramerization of MADS family transcription factors SEPALLATA3 and AGAMOUS is required for floral meristem determinacy in Arabidopsis. Nucleic Acids Research. PMID 29562355 DOI: 10.1093/Nar/Gky205  0.447
2017 Denay G, Vachon G, Dumas R, Zubieta C, Parcy F. Plant SAM-Domain Proteins Start to Reveal Their Roles. Trends in Plant Science. PMID 28668510 DOI: 10.1016/J.Tplants.2017.06.006  0.386
2017 Ezer D, Jung JH, Lan H, Biswas S, Gregoire L, Box MS, Charoensawan V, Cortijo S, Lai X, Stöckle D, Zubieta C, Jaeger KE, Wigge PA. The evening complex coordinates environmental and endogenous signals in Arabidopsis. Nature Plants. 3: 17087. PMID 28650433 DOI: 10.1038/Nplants.2017.87  0.344
2016 Silva CS, Lai X, Nanao M, Zubieta C. The Myb domain of LUX ARRHYTHMO in complex with DNA: expression, purification and crystallization. Acta Crystallographica. Section F, Structural Biology Communications. 72: 356-61. PMID 27139826 DOI: 10.1107/S2053230X16004684  0.376
2016 Huta BP, Mehlenbacher MR, Nie Y, Lai X, Zubieta C, Bou‐Abdallah F, Doyle RP. Cover Picture: The Lysosomal Protein Saposin B Binds Chloroquine (ChemMedChem 3/2016) Chemmedchem. 11: 246-246. DOI: 10.1002/Cmdc.201600030  0.303
2015 Silva CS, Puranik S, Round A, Brennich M, Jourdain A, Parcy F, Hugouvieux V, Zubieta C. Evolution of the Plant Reproduction Master Regulators LFY and the MADS Transcription Factors: The Role of Protein Structure in the Evolutionary Development of the Flower. Frontiers in Plant Science. 6: 1193. PMID 26779227 DOI: 10.3389/Fpls.2015.01193  0.402
2015 Huta BP, Mehlenbacher MR, Nie Y, Lai X, Zubieta C, Bou-Abdallah F, Doyle RP. The Lysosomal Protein Saposin B Binds Chloroquine. Chemmedchem. PMID 26616259 DOI: 10.1002/Cmdc.201500494  0.348
2014 Schild F, Kieffer-Jaquinod S, Palencia A, Cobessi D, Sarret G, Zubieta C, Jourdain A, Dumas R, Forge V, Testemale D, Bourguignon J, Hugouvieux V. Biochemical and biophysical characterization of the selenium-binding and reducing site in Arabidopsis thaliana homologue to mammals selenium-binding protein 1. The Journal of Biological Chemistry. 289: 31765-76. PMID 25274629 DOI: 10.1074/Jbc.M114.571208  0.388
2014 Puranik S, Acajjaoui S, Conn S, Costa L, Conn V, Vial A, Marcellin R, Melzer R, Brown E, Hart D, Theißen G, Silva CS, Parcy F, Dumas R, Nanao M, ... Zubieta C, et al. Structural basis for the oligomerization of the MADS domain transcription factor SEPALLATA3 in Arabidopsis. The Plant Cell. 26: 3603-15. PMID 25228343 DOI: 10.1105/Tpc.114.127910  0.433
2013 Round A, Brown E, Marcellin R, Kapp U, Westfall CS, Jez JM, Zubieta C. Determination of the GH3.12 protein conformation through HPLC-integrated SAXS measurements combined with X-ray crystallography. Acta Crystallographica. Section D, Biological Crystallography. 69: 2072-80. PMID 24100325 DOI: 10.1107/S0907444913019276  0.408
2013 Acajjaoui S, Zubieta C. Crystallization studies of the keratin-like domain from Arabidopsis thaliana SEPALLATA 3. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 997-1000. PMID 23989147 DOI: 10.1107/S174430911302006X  0.379
2012 Szolajska E, Burmeister WP, Zochowska M, Nerlo B, Andreev I, Schoehn G, Andrieu JP, Fender P, Naskalska A, Zubieta C, Cusack S, Chroboczek J. The structural basis for the integrity of adenovirus Ad3 dodecahedron. Plos One. 7: e46075. PMID 23049939 DOI: 10.1371/Journal.Pone.0046075  0.347
2012 Kowalinski E, Zubieta C, Wolkerstorfer A, Szolar OH, Ruigrok RW, Cusack S. Structural analysis of specific metal chelating inhibitor binding to the endonuclease domain of influenza pH1N1 (2009) polymerase. Plos Pathogens. 8: e1002831. PMID 22876177 DOI: 10.1371/Journal.Ppat.1002831  0.358
2012 Lallemand LA, Zubieta C, Lee SG, Wang Y, Acajjaoui S, Timmins J, McSweeney S, Jez JM, McCarthy JG, McCarthy AA. A structural basis for the biosynthesis of the major chlorogenic acids found in coffee. Plant Physiology. 160: 249-60. PMID 22822210 DOI: 10.1104/Pp.112.202051  0.401
2012 Westfall CS, Zubieta C, Herrmann J, Kapp U, Nanao MH, Jez JM. Structural basis for prereceptor modulation of plant hormones by GH3 proteins. Science (New York, N.Y.). 336: 1708-11. PMID 22628555 DOI: 10.1126/Science.1221863  0.407
2010 Axelrod HL, Kozbial P, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, ... ... Zubieta C, et al. Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 66: 1347-53. PMID 20944231 DOI: 10.1107/S1744309109021988  0.409
2009 Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, ... ... Zubieta C, et al. Structural basis of murein peptide specificity of a gamma-D-glutamyl-l-diamino acid endopeptidase. Structure (London, England : 1993). 17: 303-13. PMID 19217401 DOI: 10.1016/J.Str.2008.12.008  0.366
2008 Kozbial P, Xu Q, Chiu HJ, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Carlton D, Clayton T, Deller M, Duan L, Elias Y, ... ... Zubieta C, et al. Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold. Proteins. 71: 1589-96. PMID 18324683 DOI: 10.1002/Prot.22020  0.377
2007 Zubieta C, Joseph R, Krishna SS, McMullan D, Kapoor M, Axelrod HL, Miller MD, Abdubek P, Acosta C, Astakhova T, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, et al. Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA. Proteins. 69: 234-43. PMID 17654547 DOI: 10.1002/Prot.21673  0.41
2007 Zubieta C, Krishna SS, Kapoor M, Kozbial P, McMullan D, Axelrod HL, Miller MD, Abdubek P, Ambing E, Astakhova T, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, et al. Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif. Proteins. 69: 223-33. PMID 17654545 DOI: 10.1002/Prot.21550  0.415
2007 Strawn MA, Marr SK, Inoue K, Inada N, Zubieta C, Wildermuth MC. Arabidopsis isochorismate synthase functional in pathogen-induced salicylate biosynthesis exhibits properties consistent with a role in diverse stress responses. The Journal of Biological Chemistry. 282: 5919-33. PMID 17190832 DOI: 10.1074/Jbc.M605193200  0.325
2006 Zubieta C, Blanchoin L, Cusack S. Structural and biochemical characterization of a human adenovirus 2/12 penton base chimera. The Febs Journal. 273: 4336-45. PMID 16939624 DOI: 10.1111/J.1742-4658.2006.05430.X  0.37
2005 Fabry CM, Rosa-Calatrava M, Conway JF, Zubieta C, Cusack S, Ruigrok RW, Schoehn G. A quasi-atomic model of human adenovirus type 5 capsid. The Embo Journal. 24: 1645-54. PMID 15861131 DOI: 10.1038/Sj.Emboj.7600653  0.315
2005 Ferrer JL, Zubieta C, Dixon RA, Noel JP. Crystal structures of alfalfa caffeoyl coenzyme A 3-O-methyltransferase. Plant Physiology. 137: 1009-17. PMID 15734921 DOI: 10.1104/Pp.104.048751  0.38
2005 Zubieta C, Schoehn G, Chroboczek J, Cusack S. The structure of the human adenovirus 2 penton. Molecular Cell. 17: 121-35. PMID 15629723 DOI: 10.1016/J.Molcel.2004.11.041  0.379
2004 Kota P, Guo D, Zubieta C, Noel J, Dixon RA. O-Methylation of benzaldehyde derivatives by "lignin specific" caffeic acid 3-O-methyltransferase. Phytochemistry. 65: 837-46. PMID 15081283 DOI: 10.1016/J.Phytochem.2004.01.017  0.303
2003 Zubieta C, Ross JR, Koscheski P, Yang Y, Pichersky E, Noel JP. Structural basis for substrate recognition in the salicylic acid carboxyl methyltransferase family. The Plant Cell. 15: 1704-16. PMID 12897246 DOI: 10.1105/Tpc.014548  0.403
2003 Noel JP, Dixon RA, Pichersky E, Zubieta C, Ferrer JL. Chapter two Structural, functional, and evolutionary basis for methylation of plant small molecules Recent Advances in Phytochemistry. 37: 37-58. DOI: 10.1016/S0079-9920(03)80017-5  0.371
2002 Zubieta C, Kota P, Ferrer JL, Dixon RA, Noel JP. Structural basis for the modulation of lignin monomer methylation by caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase. The Plant Cell. 14: 1265-77. PMID 12084826 DOI: 10.1105/Tpc.001412  0.39
2002 Gang DR, Lavid N, Zubieta C, Chen F, Beuerle T, Lewinsohn E, Noel JP, Pichersky E. Characterization of phenylpropene O-methyltransferases from sweet basil: Facile change of substrate specificity and convergent evolution within a plant O-methyltransferase family Plant Cell. 14: 505-519. PMID 11884690 DOI: 10.1105/Tpc.010327  0.315
2001 Zubieta C, He XZ, Dixon RA, Noel JP. Structures of two natural product methyltransferases reveal the basis for substrate specificity in plant O-methyltransferases. Nature Structural Biology. 8: 271-9. PMID 11224575 DOI: 10.1038/85029  0.39
2001 Dixon RA, Chen F, He XZ, Noel JP, Zubieta C. Chapter Seven Properties and metabolic engineering of alfalfa phenylpropanoid pathway O-methyltransferases Recent Advances in Phytochemistry. 35: 131-154. DOI: 10.1016/S0079-9920(01)80008-3  0.324
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