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Bradley J. Baker - Publications

Affiliations: 
2011- Center for Functional Connectomics Korea Institute of Science and Technology (KIST) 
Area:
Optogenetics
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62 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Rayaprolu V, Miettinen HM, Baker W, Fisher M, Mueller G, Rankin WO, Kelly JJ, Ratzan WJ, Leong LM, Davisson JA, Baker BJ, Kohout SC. S1 hydrophobic residues alter the voltage sensing phosphatase enzymatic function and voltage sensing. Biorxiv : the Preprint Server For Biology. PMID 38234747 DOI: 10.1101/2023.12.27.573443  0.415
2022 Lee S, Kang BE, Song YK, Baker BJ. A trafficking motif alters GEVI activity implicating persistent protein interactions at the membrane. Biophysical Reports. 2: 100047. PMID 36425771 DOI: 10.1016/j.bpr.2022.100047  0.798
2022 Sepehri Rad M, Cohen LB, Baker BJ. Conserved Amino Acids Residing Outside the Voltage Field Can Shift the Voltage Sensitivity and Increase the Signal Speed and Size of Based GEVIs. Frontiers in Cell and Developmental Biology. 10: 868143. PMID 35784472 DOI: 10.3389/fcell.2022.868143  0.643
2021 Chou N, Shin H, Kim K, Chae U, Jang M, Jeong UJ, Hwang KS, Yi B, Lee SE, Woo J, Cho Y, Lee C, Baker BJ, Oh SJ, Nam MH, et al. A Multimodal Multi-Shank Fluorescence Neural Probe for Cell-Type-Specific Electrophysiology in Multiple Regions across a Neural Circuit. Advanced Science (Weinheim, Baden-Wurttemberg, Germany). e2103564. PMID 34796701 DOI: 10.1002/advs.202103564  0.51
2021 Rhee JK, Iwamoto Y, Baker BJ. Visualizing Oscillations in Brain Slices With Genetically Encoded Voltage Indicators. Frontiers in Neuroanatomy. 15: 741711. PMID 34795565 DOI: 10.3389/fnana.2021.741711  0.343
2021 Kang BE, Leong LM, Kim Y, Miyazaki K, Ross WN, Baker BJ. Mechanism of ArcLight derived GEVIs involves electrostatic interactions that can affect proton wires. Biophysical Journal. PMID 33744263 DOI: 10.1016/j.bpj.2021.03.009  0.845
2021 Leong LM, Kang BE, Baker BJ. Improving the flexibility of Genetically Encoded Voltage Indicators via intermolecular FRET. Biophysical Journal. PMID 33744262 DOI: 10.1016/j.bpj.2021.03.010  0.831
2021 Nakajima R, Laskaris N, Rhee JK, Baker BJ, Kosmidis EK. GEVI cell-type specific labelling and a manifold learning approach provide evidence for lateral inhibition at the population level in the mouse hippocampal CA1 area. The European Journal of Neuroscience. PMID 33675122 DOI: 10.1111/ejn.15177  0.525
2020 Rhee JK, Leong LM, Mukim MSI, Kang BE, Lee S, Bilbao-Broch L, Baker BJ. Biophysical Parameters of GEVIs: Considerations for Imaging Voltage. Biophysical Journal. PMID 32521239 DOI: 10.1016/J.Bpj.2020.05.019  0.796
2019 Lee S, Song YK, Baker BJ. Engineering Photoactivatability in Genetically Encoded Voltage and pH Indicators. Frontiers in Cellular Neuroscience. 13: 482. PMID 31736711 DOI: 10.3389/Fncel.2019.00482  0.704
2019 Ross B, Loew LM, Baker B. Decision letter: Optical estimation of absolute membrane potential using fluorescence lifetime imaging Elife. DOI: 10.7554/Elife.44522.039  0.414
2019 Mukim MSI, Baker BJ. Development of genetically encoded voltage indicators (GEVIs) through testing heterogeneous voltage ranges and disrupting dimerization Ibro Reports. 6: S263-S264. DOI: 10.1016/j.ibror.2019.07.819  0.352
2019 Min Leong L, Eum Kang B, Baker BJ. A Voltage Dependent Heterotrimeric FRET Signal Suggests Multimeric Association for the Voltage Sensing Domain of the Voltage Sensing Phosphatase Biophysical Journal. 116: 146a. DOI: 10.1016/J.Bpj.2018.11.811  0.444
2019 Lee S, Song Y, Baker BJ. Development of Photoactivatable Optical Bio-Sensors of Physiological Activities Biophysical Journal. 116: 149a. DOI: 10.1016/J.Bpj.2018.11.3142  0.596
2019 Lee S, Eum Kang B, Kim M, Song Y, Baker BJ. Variable Consequences of Membrane Targeting Motifs for Genetically Encoded Voltage Indicators Biophysical Journal. 116: 498a. DOI: 10.1016/J.Bpj.2018.11.2684  0.626
2018 Nakajima R, Baker BJ. Mapping of excitatory and inhibitory postsynaptic potentials of neuronal populations in hippocampal slices using the GEVI, ArcLight. Journal of Physics D: Applied Physics. 51. PMID 30739956 DOI: 10.1088/1361-6463/Aae2E3  0.635
2018 Eum Kang B, Lee S, Baker BJ. Optical consequences of a genetically-encoded voltage indicator with a pH sensitive fluorescent protein. Neuroscience Research. PMID 30342069 DOI: 10.1016/J.Neures.2018.10.006  0.71
2018 Yi B, Kang BE, Lee S, Braubach S, Baker BJ. A dimeric fluorescent protein yields a bright, red-shifted GEVI capable of population signals in brain slice. Scientific Reports. 8: 15199. PMID 30315245 DOI: 10.1038/S41598-018-33297-Y  0.831
2018 Sepehri Rad M, Cohen LB, Braubach O, Baker BJ. Monitoring voltage fluctuations of intracellular membranes. Scientific Reports. 8: 6911. PMID 29720664 DOI: 10.1038/S41598-018-25083-7  0.584
2018 Min Leong L, Eum Kang B, Baker BJ. Observing the Movement of Heterogeneous Voltage Sensing Domains via Intermolecular FRET Biophysical Journal. 114: 476a. DOI: 10.1016/J.Bpj.2017.11.2620  0.301
2018 Sepehri Rad M, Cohen LB, Braubach O, Baker BJ. Monitoring Voltage Fluctuations of Intracellular Membranes Fluctuations of Intracellular Membranes Biophysical Journal. 114: 360a. DOI: 10.1016/j.bpj.2017.11.1998  0.523
2017 Sepehri Rad M, Choi Y, Cohen LB, Baker BJ, Zhong S, Storace DA, Braubach OR. Voltage and Calcium Imaging of Brain Activity. Biophysical Journal. PMID 29102396 DOI: 10.1016/J.Bpj.2017.09.040  0.567
2017 Jung A, Rajakumar D, Yoon BJ, Baker BJ. Modulating the Voltage-sensitivity of a Genetically Encoded Voltage Indicator. Experimental Neurobiology. 26: 241-251. PMID 29093633 DOI: 10.5607/En.2017.26.5.241  0.818
2017 Lee S, Geiller T, Jung A, Nakajima R, Song YK, Baker BJ. Improving a genetically encoded voltage indicator by modifying the cytoplasmic charge composition. Scientific Reports. 7: 8286. PMID 28811673 DOI: 10.1038/S41598-017-08731-2  0.834
2017 Min Leong L, Eum Kang B, Baker B. Exploring the Movement of S4 by Intermolecular FRET of Genetically-Encoded Voltage Indicators Biophysical Journal. 112: 502a. DOI: 10.1016/J.Bpj.2016.11.2718  0.379
2017 Sepehri Rad M, Cohen LB, Baker BJ. A Fluorescent Protein Voltage Sensor in the Endoplasmic Reticulum Biophysical Journal. 112: 458a. DOI: 10.1016/J.Bpj.2016.11.2454  0.629
2016 Kang BE, Baker BJ. Pado, a fluorescent protein with proton channel activity can optically monitor membrane potential, intracellular pH, and map gap junctions. Scientific Reports. 6: 23865. PMID 28250418 DOI: 10.1038/srep23865  0.513
2016 Nakajima R, Jung A, Yoon BJ, Baker BJ. Optogenetic Monitoring of Synaptic Activity with Genetically Encoded Voltage Indicators. Frontiers in Synaptic Neuroscience. 8: 22. PMID 27547183 DOI: 10.3389/Fnsyn.2016.00022  0.799
2016 Kibat C, Krishnan S, Ramaswamy M, Baker BJ, Jesuthasan S. Imaging voltage in zebrafish as a route to characterizing a vertebrate functional connectome: promises and pitfalls of genetically encoded indicators. Journal of Neurogenetics. 30: 80-8. PMID 27328843 DOI: 10.1080/01677063.2016.1180384  0.437
2016 Storace D, Sepehri Rad M, Kang B, Cohen LB, Hughes T, Baker BJ. Toward Better Genetically Encoded Sensors of Membrane Potential. Trends in Neurosciences. 39: 277-89. PMID 27130905 DOI: 10.1016/J.Tins.2016.02.005  0.647
2016 Kang BE, Baker BJ. Pado, a fluorescent protein with proton channel activity can optically monitor membrane potential, intracellular pH, and map gap junctions. Scientific Reports. 6: 23865. PMID 27040905 DOI: 10.1038/Srep23865  0.844
2016 Lee S, Piao HH, Sepheri-Rad M, Jung A, Sung U, Song YK, Baker BJ. Imaging Membrane Potential with Two Types of Genetically Encoded Fluorescent Voltage Sensors. Journal of Visualized Experiments : Jove. PMID 26890551 DOI: 10.3791/53566  0.798
2015 Sung U, Sepehri-Rad M, Piao HH, Jin L, Hughes T, Cohen LB, Baker BJ. Developing Fast Fluorescent Protein Voltage Sensors by Optimizing FRET Interactions. Plos One. 10: e0141585. PMID 26587834 DOI: 10.1371/Journal.Pone.0141585  0.848
2015 Baker B, Gao X, Wolff BS, Jin L, Cohen LB, Bleau CX, Wu JY. In Vivo Voltage-Sensitive Dye Imaging of Mammalian Cortex Using "Blue" Dyes. Cold Spring Harbor Protocols. 2015: pdb.prot089359. PMID 26527769 DOI: 10.1101/Pdb.Prot089359  0.6
2015 Baker B, Gao X, Wolff BS, Jin L, Cohen LB, Bleau CX, Wu JY. Voltage-Sensitive Dye Imaging of Population Signals in Brain Slices. Cold Spring Harbor Protocols. 2015: pdb.prot089342. PMID 26527768 DOI: 10.1101/Pdb.Prot089342  0.579
2015 Storace D, Rad MS, Han Z, Jin L, Cohen LB, Hughes T, Baker BJ, Sung U. Genetically Encoded Protein Sensors of Membrane Potential. Advances in Experimental Medicine and Biology. 859: 493-509. PMID 26238066 DOI: 10.1007/978-3-319-17641-3_20  0.672
2015 Jung A, Garcia JE, Kim E, Yoon BJ, Baker BJ. Linker length and fusion site composition improve the optical signal of genetically encoded fluorescent voltage sensors. Neurophotonics. 2: 021012. PMID 26158002 DOI: 10.1117/1.Nph.2.2.021012  0.715
2015 Piao HH, Rajakumar D, Kang BE, Kim EH, Baker BJ. Combinatorial mutagenesis of the voltage-sensing domain enables the optical resolution of action potentials firing at 60 Hz by a genetically encoded fluorescent sensor of membrane potential. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 35: 372-85. PMID 25568129 DOI: 10.1523/Jneurosci.3008-14.2015  0.804
2015 Sung U, Jin L, Hughes T, Cohen LB, Baker BJ, Sepehri-Rad M. Improving Signal Dynamics of Fluorescent Protein Voltage Sensors by Optimizing FRET Interactions Biophysical Journal. 108: 152a. DOI: 10.1016/J.Bpj.2014.11.838  0.693
2015 Sepehri Rad M, Sung U, Hughes T, Cohen LB, Baker BJ. Development of Novel FRET-Based Fluorescent Voltage Sensor Proteins Biophysical Journal. 108: 152a. DOI: 10.1016/J.Bpj.2014.11.837  0.7
2015 Rajakumar D, Piao H, Kang BE, Jung A, Kim EH, Baker BJ. V220 Mutants of Ciona Voltage-Sensing Domain Based Genetically Encoded Fluorescent Voltage Sensors Biophysical Journal. 108: 151a-152a. DOI: 10.1016/J.Bpj.2014.11.835  0.824
2015 Kang BE, Jung A, Rajakumar D, Hong Hua P, Baker B. Optically Tracing Electrical Synapses with Proton Channel-Based Voltage Sensing Protein Biophysical Journal. 108: 327a. DOI: 10.1016/J.Bpj.2014.11.1777  0.813
2015 Storace D, Rad MS, Han Z, Jin L, Cohen LB, Hughes T, Baker BJ, Sung U. Genetically encoded protein sensors of membrane potential Advances in Experimental Medicine and Biology. 859: 493-509. DOI: 10.1007/978-3-319-17641-3_20  0.527
2014 Sung U, Allahverdizadeh M, Jin L, Hughes T, Cohen LB, Baker BJ. Nabi, a Novel FRET-Based Voltage Sensor Protein Biophysical Journal. 106: 418a. DOI: 10.1016/J.Bpj.2013.11.2353  0.718
2014 Kang BE, Baker B, Piao HH, Jung A. Pado, a Novel Fluorescent Voltage-Sensing Protein, Identified by a Highly Conserved Motif in the S2 Trans-Membrane Segment Biophysical Journal. 106: 381a. DOI: 10.1016/J.Bpj.2013.11.2158  0.824
2013 Han Z, Jin L, Platisa J, Cohen LB, Baker BJ, Pieribone VA. Fluorescent protein voltage probes derived from ArcLight that respond to membrane voltage changes with fast kinetics. Plos One. 8: e81295. PMID 24312287 DOI: 10.1371/Journal.Pone.0081295  0.702
2013 Piao H, Jung A, Cohen LB, Kim E, Jin L, Baker BJ. Charged Residues in the S1, S2, and S3 Transmembrane Domains affect the Speed, Size and Voltage Response of Genetically-Encoded Fluorescent Sensors of Membrane Potential Biophysical Journal. 104: 529a. DOI: 10.1016/J.Bpj.2012.11.2928  0.783
2013 Sung U, Allahverdizadeh M, Hughes T, Cohen LB, Baker B. Development of New Fluorescent Voltage Sensor Proteins Biophysical Journal. 104: 194a. DOI: 10.1016/J.Bpj.2012.11.1093  0.719
2012 Baker BJ, Jin L, Han Z, Cohen LB, Popovic M, Platisa J, Pieribone V. Genetically encoded fluorescent voltage sensors using the voltage-sensing domain of Nematostella and Danio phosphatases exhibit fast kinetics. Journal of Neuroscience Methods. 208: 190-6. PMID 22634212 DOI: 10.1016/J.Jneumeth.2012.05.016  0.689
2011 Jin L, Baker B, Mealer R, Cohen L, Pieribone V, Pralle A, Hughes T. Random insertion of split-cans of the fluorescent protein venus into Shaker channels yields voltage sensitive probes with improved membrane localization in mammalian cells. Journal of Neuroscience Methods. 199: 1-9. PMID 21497167 DOI: 10.1016/J.Jneumeth.2011.03.028  0.664
2010 Han Z, Jin L, Baker B, Cohen L, Hughes T, Pieribone V. Optimizing Protein-Based Optical Voltage Sensitive Probes: A Systematic Study Biophysical Journal. 98: 395a. DOI: 10.1016/J.Bpj.2009.12.2130  0.639
2010 Jin L, Baker BJ, Cohen LB, Mutoh H, Dimitrov D, Perron A, Iwamoto Y, Isacoff EY, Pieribone VA, Hughes T, Knöpfel T, Akemann W. Fluorescent sensors of membrane potential that are genetically encoded Imaging the Brain With Optical Methods. 27-43. DOI: 10.1007/978-1-4419-0452-2_2  0.566
2009 Homma R, Baker BJ, Jin L, Garaschuk O, Konnerth A, Cohen LB, Zecevic D. Wide-field and two-photon imaging of brain activity with voltage- and calcium-sensitive dyes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 364: 2453-67. PMID 19651647 DOI: 10.1098/Rstb.2009.0084  0.642
2009 Homma R, Baker BJ, Jin L, Garaschuk O, Konnerth A, Cohen LB, Bleau CX, Canepari M, Djurisic M, Zecevic D. Wide-field and two-photon imaging of brain activity with voltage- and calcium-sensitive dyes. Methods in Molecular Biology (Clifton, N.J.). 489: 43-79. PMID 18839087 DOI: 10.1007/978-1-59745-543-5_3  0.598
2009 Jin L, Baker B, Cohen L, Roman C, Pieribone V, Pralle A, Isacoff E, Mealer R, Hughes T. Random Insertion of Split-can Venus into Kv1.4 Yields Voltage Sensitive Fluorescent Probes Biophysical Journal. 96: 403a. DOI: 10.1016/j.bpj.2008.12.2049  0.66
2008 Baker BJ, Mutoh H, Dimitrov D, Akemann W, Perron A, Iwamoto Y, Jin L, Cohen LB, Isacoff EY, Pieribone VA, Hughes T, Knöpfel T. Genetically encoded fluorescent sensors of membrane potential. Brain Cell Biology. 36: 53-67. PMID 18679801 DOI: 10.1007/S11068-008-9026-7  0.665
2007 Dimitrov D, He Y, Mutoh H, Baker BJ, Cohen L, Akemann W, Knöpfel T. Engineering and characterization of an enhanced fluorescent protein voltage sensor. Plos One. 2: e440. PMID 17487283 DOI: 10.1371/Journal.Pone.0000440  0.693
2007 Baker BJ, Lee H, Pieribone VA, Cohen LB, Isacoff EY, Knopfel T, Kosmidis EK. Three fluorescent protein voltage sensors exhibit low plasma membrane expression in mammalian cells. Journal of Neuroscience Methods. 161: 32-8. PMID 17126911 DOI: 10.1016/J.Jneumeth.2006.10.005  0.688
2005 Baker BJ, Kosmidis EK, Vucinic D, Falk CX, Cohen LB, Djurisic M, Zecevic D. Imaging brain activity with voltage- and calcium-sensitive dyes. Cellular and Molecular Neurobiology. 25: 245-82. PMID 16050036 DOI: 10.1007/S10571-005-3059-6  0.604
1995 Dangel AW, Baker BJ, Mendoza AR, Yu CY. Complement component C4 gene intron 9 as a phylogenetic marker for primates: long terminal repeats of the endogenous retrovirus ERV-K(C4) are a molecular clock of evolution. Immunogenetics. 42: 41-52. PMID 7797267 DOI: 10.1007/Bf00164986  0.456
1994 Dangel AW, Mendoza AR, Baker BJ, Daniel CM, Carroll MC, Wu LC, Yu CY. The dichotomous size variation of human complement C4 genes is mediated by a novel family of endogenous retroviruses, which also establishes species-specific genomic patterns among Old World primates. Immunogenetics. 40: 425-36. PMID 7545960 DOI: 10.1007/Bf00177825  0.455
1991 Baker BJ, Dotzlaf JE, Yeh WK. Deacetoxycephalosporin C hydroxylase of Streptomyces clavuligerus. Purification, characterization, bifunctionality, and evolutionary implication. The Journal of Biological Chemistry. 266: 5087-93. PMID 2002049  0.456
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