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Shao-En Ong - Publications

Affiliations: 
University of Washington, Seattle, Seattle, WA 
Area:
Quantitative Proteomics, Signaling
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47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Omar MH, Lauer SM, Lau HT, Golkowski M, Ong SE, Scott JD. Proximity biotinylation to define the local environment of the protein kinase A catalytic subunit in adrenal cells. Star Protocols. 4: 101992. PMID 36607814 DOI: 10.1016/j.xpro.2022.101992  0.343
2021 Beavo JA, Golkowski M, Shimizu-Albergine M, Beltejar MC, Bornfeldt KE, Ong SE. Title: Phosphoproteomic Analysis as an Approach for Understanding Molecular Mechanisms of cAMP-dependent Actions. Molecular Pharmacology. PMID 33574048 DOI: 10.1124/molpharm.120.000197  0.314
2020 Potter ZE, Lau HT, Chakraborty S, Fang L, Guttman M, Ong SE, Fowler DM, Maly DJ. Parallel Chemoselective Profiling for Mapping Protein Structure. Cell Chemical Biology. PMID 32649906 DOI: 10.1016/J.Chembiol.2020.06.014  0.389
2020 Gabrovsek L, Collins KB, Aggarwal S, Saunders LM, Lau HT, Suh D, Sancak Y, Trapnell C, Ong SE, Smith FD, Scott JD. A-kinase-anchoring protein 1 (dAKAP1)-based signaling complexes coordinate local protein synthesis at the mitochondrial surface. The Journal of Biological Chemistry. PMID 32482893 DOI: 10.1074/Jbc.Ra120.013454  0.426
2020 Golkowski M, Vidadala VN, Lau HT, Shoemaker A, Shimizu-Albergine M, Beavo J, Maly DJ, Ong SE. Kinobead/LC-MS Phosphokinome Profiling Enables Rapid Analyses of Kinase-Dependent Cell Signaling Networks. Journal of Proteome Research. PMID 32037842 DOI: 10.1021/Acs.Jproteome.9B00742  0.396
2019 Ando Y, Elkayam E, McPherson RL, Dasovich M, Cheng SJ, Voorneveld J, Filippov DV, Ong SE, Joshua-Tor L, Leung AKL. ELTA: Enzymatic Labeling of Terminal ADP-Ribose. Molecular Cell. PMID 30712989 DOI: 10.1016/J.Molcel.2018.12.022  0.327
2018 Aggarwal S, Gabrovsek L, Langeberg LK, Golkowski M, Ong SE, Smith FD, Scott JD. Depletion of dAKAP1-protein kinase A signaling islands from the outer mitochondrial membrane alters breast cancer cell metabolism and motility. The Journal of Biological Chemistry. PMID 30598507 DOI: 10.1074/Jbc.Ra118.006741  0.33
2018 Smith FD, Omar MH, Nygren PJ, Soughayer J, Hoshi N, Lau HT, Snyder CG, Branon TC, Ghosh D, Langeberg LK, Ting AY, Santana LF, Ong SE, Navedo MF, Scott JD. Single nucleotide polymorphisms alter kinase anchoring and the subcellular targeting of A-kinase anchoring proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30455320 DOI: 10.1073/Pnas.1816614115  0.305
2017 Golkowski M, Maly DJ, Ong SE. Proteomic Profiling of Protein Kinase Inhibitor Targets by Mass Spectrometry. Methods in Molecular Biology (Clifton, N.J.). 1636: 105-117. PMID 28730476 DOI: 10.1007/978-1-4939-7154-1_8  0.431
2017 Daniels CM, Ong SE, Leung AKL. ADP-Ribosylated Peptide Enrichment and Site Identification: The Phosphodiesterase-Based Method. Methods in Molecular Biology (Clifton, N.J.). 1608: 79-93. PMID 28695505 DOI: 10.1007/978-1-4939-6993-7_7  0.341
2017 Beltejar MG, Lau HT, Golkowski MG, Ong SE, Beavo JA. Analyses of PDE-regulated phosphoproteomes reveal unique and specific cAMP-signaling modules in T cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 28634298 DOI: 10.1073/Pnas.1703939114  0.409
2017 Golkowski M, Vidadala RS, Lombard CK, Suh HW, Maly DJ, Ong SE. Kinobead and single-shot LC-MS profiling identifies selective PKD inhibitors. Journal of Proteome Research. PMID 28102076 DOI: 10.1021/Acs.Jproteome.6B00817  0.388
2016 Palazzo L, Daniels CM, Nettleship JE, Rahman N, McPherson RL, Ong SE, Kato K, Nureki O, Leung AK, Ahel I. ENPP1 processes protein ADP-ribosylation in vitro. The Febs Journal. PMID 27406238 DOI: 10.1111/Febs.13811  0.327
2015 Daniels CM, Thirawatananond P, Ong SE, Gabelli SB, Leung AK. Nudix hydrolases degrade protein-conjugated ADP-ribose. Scientific Reports. 5: 18271. PMID 26669448 DOI: 10.1038/Srep18271  0.307
2015 Golkowski M, Shimizu-Albergine M, Suh HW, Beavo JA, Ong SE. Studying mechanisms of cAMP and cyclic nucleotide phosphodiesterase signaling in Leydig cell function with phosphoproteomics. Cellular Signalling. PMID 26643407 DOI: 10.1016/J.Cellsig.2015.11.014  0.314
2015 Daniels CM, Ong SE, Leung AK. The Promise of Proteomics for the Study of ADP-Ribosylation. Molecular Cell. 58: 911-24. PMID 26091340 DOI: 10.1016/J.Molcel.2015.06.012  0.305
2014 Lau HT, Suh HW, Golkowski M, Ong SE. Comparing SILAC- and stable isotope dimethyl-labeling approaches for quantitative proteomics. Journal of Proteome Research. 13: 4164-74. PMID 25077673 DOI: 10.1021/pr500630a  0.36
2014 Lau HT, Lewis KA, Ong SE. Quantifying in vivo, site-specific changes in protein methylation with SILAC. Methods in Molecular Biology (Clifton, N.J.). 1188: 161-75. PMID 25059611 DOI: 10.1007/978-1-4939-1142-4_12  0.331
2014 Daniels CM, Ong SE, Leung AK. Phosphoproteomic approach to characterize protein mono- and poly(ADP-ribosyl)ation sites from cells. Journal of Proteome Research. 13: 3510-22. PMID 24920161 DOI: 10.1021/Pr401032Q  0.319
2014 Golkowski M, Brigham JL, Perera GK, Romano GE, Maly DJ, Ong SE. Rapid profiling of protein kinase inhibitors by quantitative proteomics. Medchemcomm. 5: 363-369. PMID 24648882 DOI: 10.1039/C3Md00315A  0.316
2013 Rensvold JW, Ong SE, Jeevananthan A, Carr SA, Mootha VK, Pagliarini DJ. Complementary RNA and protein profiling identifies iron as a key regulator of mitochondrial biogenesis. Cell Reports. 3: 237-45. PMID 23318259 DOI: 10.1016/j.celrep.2012.11.029  0.305
2012 Ong SE. The expanding field of SILAC Analytical and Bioanalytical Chemistry. 404: 967-976. PMID 22526667 DOI: 10.1007/s00216-012-5998-3  0.377
2012 Mertins P, Udeshi ND, Clauser KR, Mani DR, Patel J, Ong SE, Jaffe JD, Carr SA. iTRAQ labeling is superior to mTRAQ for quantitative global proteomics and phosphoproteomics. Molecular & Cellular Proteomics : McP. 11: M111.014423. PMID 22210691 DOI: 10.1074/Mcp.M111.014423  0.366
2011 Vugt MAv, Fehrmann RSN, Ong S. A combined bioinformatics and proteomics approach identifies DNA repair factors regulated by the APC/C Cancer Research. 71: 2960-2960. DOI: 10.1158/1538-7445.Am2011-2960  0.319
2010 Ong SE. Whole proteomes as internal standards in quantitative proteomics. Genome Medicine. 2: 49. PMID 20678185 DOI: 10.1186/gm170  0.345
2010 Ong SE. Unbiased identification of protein-bait interactions using biochemical enrichment and quantitative proteomics. Cold Spring Harbor Protocols. 2010: pdb.prot5400. PMID 20194469 DOI: 10.1101/pdb.prot5400  0.344
2010 van Vugt MA, Gardino AK, Linding R, Ostheimer GJ, Reinhardt HC, Ong SE, Tan CS, Miao H, Keezer SM, Li J, Pawson T, Lewis TA, Carr SA, Smerdon SJ, Brummelkamp TR, et al. A mitotic phosphorylation feedback network connects Cdk1, Plk1, 53BP1, and Chk2 to inactivate the G(2)/M DNA damage checkpoint. Plos Biology. 8: e1000287. PMID 20126263 DOI: 10.1371/Journal.Pbio.1000287  0.321
2010 Mortensen P, Gouw JW, Olsen JV, Ong SE, Rigbolt KT, Bunkenborg J, Cox J, Foster LJ, Heck AJ, Blagoev B, Andersen JS, Mann M. MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. Journal of Proteome Research. 9: 393-403. PMID 19888749 DOI: 10.1021/Pr900721E  0.583
2009 Margolin AA, Ong SE, Schenone M, Gould R, Schreiber SL, Carr SA, Golub TR. Empirical Bayes analysis of quantitative proteomics experiments. Plos One. 4: e7454. PMID 19829701 DOI: 10.1371/Journal.Pone.0007454  0.31
2009 Ong SE, Schenone M, Margolin AA, Li X, Do K, Doud MK, Mani DR, Kuai L, Wang X, Wood JL, Tolliday NJ, Koehler AN, Marcaurelle LA, Golub TR, Gould RJ, et al. Identifying the proteins to which small-molecule probes and drugs bind in cells. Proceedings of the National Academy of Sciences of the United States of America. 106: 4617-22. PMID 19255428 DOI: 10.1073/Pnas.0900191106  0.37
2007 Ong SE, Mann M. Stable isotope labeling by amino acids in cell culture for quantitative proteomics. Methods in Molecular Biology (Clifton, N.J.). 359: 37-52. PMID 17484109 DOI: 10.1007/978-1-59745-255-7_3  0.494
2007 Lowery DM, Clauser KR, Hjerrild M, Lim D, Alexander J, Kishi K, Ong SE, Gammeltoft S, Carr SA, Yaffe MB. Proteomic screen defines the Polo-box domain interactome and identifies Rock2 as a Plk1 substrate. The Embo Journal. 26: 2262-73. PMID 17446864 DOI: 10.1038/Sj.Emboj.7601683  0.301
2007 Shen JP, Divakaran S, Kuai L, Wang X, Ong S, Amaravadi R, Wood J, Carr S, Schreiber S, Haggarty S, Bradner J. Autophagy as a Target Pathway in Multiple Myeloma: A Forward Chemical Genetic Approach. Blood. 110: 2510-2510. DOI: 10.1182/Blood.V110.11.2510.2510  0.337
2006 Ong SE, Mann M. Identifying and quantifying sites of protein methylation by heavy methyl SILAC. Current Protocols in Protein Science. Unit 14.9. PMID 18429299 DOI: 10.1002/0471140864.Ps1409S46  0.421
2006 Ong SE, Mann M. A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC). Nature Protocols. 1: 2650-60. PMID 17406521 DOI: 10.1038/Nprot.2006.427  0.48
2005 Ong SE, Mann M. Mass spectrometry-based proteomics turns quantitative. Nature Chemical Biology. 1: 252-62. PMID 16408053 DOI: 10.1038/Nchembio736  0.523
2005 Andersen JS, Lam YW, Leung AK, Ong SE, Lyon CE, Lamond AI, Mann M. Nucleolar proteome dynamics. Nature. 433: 77-83. PMID 15635413 DOI: 10.1038/Nature03207  0.488
2004 Ong SE, Mittler G, Mann M. Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. Nature Methods. 1: 119-26. PMID 15782174 DOI: 10.1038/Nmeth715  0.464
2004 Blagoev B, Ong SE, Kratchmarova I, Mann M. Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics. Nature Biotechnology. 22: 1139-45. PMID 15314609 DOI: 10.1038/Nbt1005  0.457
2004 Olsen JV, Ong SE, Mann M. Trypsin cleaves exclusively C-terminal to arginine and lysine residues. Molecular & Cellular Proteomics : McP. 3: 608-14. PMID 15034119 DOI: 10.1074/Mcp.T400003-Mcp200  0.561
2003 Ong SE, Kratchmarova I, Mann M. Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC). Journal of Proteome Research. 2: 173-81. PMID 12716131 DOI: 10.1021/Pr0255708  0.489
2003 Ong SE, Foster LJ, Mann M. Mass spectrometric-based approaches in quantitative proteomics Methods. 29: 124-130. PMID 12606218 DOI: 10.1016/S1046-2023(02)00303-1  0.511
2003 Blagoev B, Kratchmarova I, Ong SE, Nielsen M, Foster LJ, Mann M. A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling Nature Biotechnology. 21: 315-318. PMID 12577067 DOI: 10.1038/Nbt790  0.486
2002 Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular & Cellular Proteomics : McP. 1: 376-86. PMID 12118079 DOI: 10.1074/Mcp.M200025-Mcp200  0.605
2002 Mann M, Ong SE, Grønborg M, Steen H, Jensen ON, Pandey A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends in Biotechnology. 20: 261-8. PMID 12007495 DOI: 10.1016/S0167-7799(02)01944-3  0.593
2002 Dan I, Ong SE, Watanabe NM, Blagoev B, Nielsen MM, Kajikawa E, Kristiansen TZ, Mann M, Pandey A. Cloning of MASK, a novel member of the mammalian germinal center kinase III subfamily, with apoptosis-inducing properties. The Journal of Biological Chemistry. 277: 5929-39. PMID 11741893 DOI: 10.1074/Jbc.M110882200  0.406
2002 Ong S, Pandey A. Using mass spectrometry for drug discovery Trends in Biotechnology. 20: 227. DOI: 10.1016/S0167-7799(02)01956-X  0.354
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