John M. Bates, Ph.D. - Publications

Affiliations: 
Field Museum of Natural History, Chicago, IL, United States 
 University of Chicago, Chicago, IL 
Area:
genetics, ornithology

73 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Herman RW, Clucas G, Younger J, Bates J, Robinson B, Reddy S, Stepanuk J, O'Brien K, Veeramah K, Lynch HJ. Whole genome sequencing reveals stepping-stone dispersal buffered against founder effects in a range expanding seabird. Molecular Ecology. e17282. PMID 38299701 DOI: 10.1111/mec.17282  0.333
2023 Nachman MW, Beckman EJ, Bowie RC, Cicero C, Conroy CJ, Dudley R, Hayes TB, Koo MS, Lacey EA, Martin CH, McGuire JA, Patton JL, Spencer CL, Tarvin RD, Wake MH, ... ... Bates J, et al. Specimen collection is essential for modern science. Plos Biology. 21: e3002318. PMID 37992027 DOI: 10.1371/journal.pbio.3002318  0.722
2023 Capurucho JMG, Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). Biodiversity Genomes. 2023. PMID 37153853 DOI: 10.56179/001c.74632  0.563
2023 Eliason CM, Cooper JC, Hackett SJ, Zahnle E, Pequeño Saco TZ, Maddox JD, Hains T, Hauber ME, Bates JM. Interspecific hybridization explains rapid gorget colour divergence in hummingbirds (Aves: Trochilidae). Royal Society Open Science. 10: 221603. PMID 36866078 DOI: 10.1098/rsos.221603  0.547
2022 Hains T, Pirro S, Bates JM, Hackett SJ. The Complete Genome Sequence of , the Carolina Parakeet. Biodiversity Genomes. 2022. PMID 36632172 DOI: 10.56179/001c.66227  0.57
2022 Hains T, Pirro S, Bates J, Hackett S. The Complete Genome Sequence of the Spix's Macaw. Biodiversity Genomes. 2022. PMID 36467626 DOI: 10.56179/001c.37839  0.555
2022 Hains T, Pirro S, O'Neill K, Valez J, Speed N, Clubb S, Oleksyk T, Bates J, Hackett S. The Complete Genome Sequences of 94 Species of Parrots (Psittaciformes, Aves). Biodiversity Genomes. 2022. PMID 36405343 DOI: 10.56179/001c.40338  0.56
2022 Bates JM, Fidino M, Nowak-Boyd L, Strausberger BM, Schmidt KA, Whelan CJ. Climate change affects bird nesting phenology: Comparing contemporary field and historical museum nesting records. The Journal of Animal Ecology. PMID 35332554 DOI: 10.1111/1365-2656.13683  0.322
2021 Skeen HR, Cooper NW, Hackett SJ, Bates JM, Marra PP. Repeated sampling of individuals reveals impact of tropical and temperate habitats on microbiota of a migratory bird. Molecular Ecology. PMID 34580952 DOI: 10.1111/mec.16170  0.565
2021 Dantas SM, Weckstein JD, Bates J, Oliveira JN, Catanach TA, Aleixo A. Multi-character taxonomic review, systematics, and biogeography of the Black-capped/Tawny-bellied Screech Owl (emMegascops/em ematricapilla/em-emM. watsonii/em) complex (Aves: Strigidae). Zootaxa. 4949: zootaxa.4949.3.1. PMID 33903329 DOI: 10.11646/zootaxa.4949.3.1  0.682
2021 McNew SM, Barrow LN, Williamson JL, Galen SC, Skeen HR, DuBay SG, Gaffney AM, Johnson AB, Bautista E, Ordoñez P, Schmitt CJ, Smiley A, Valqui T, Bates JM, Hackett SJ, et al. Contrasting drivers of diversity in hosts and parasites across the tropical Andes. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33731475 DOI: 10.1073/pnas.2010714118  0.544
2020 Capurucho JMG, Ashley MV, Tsuru BR, Cooper JC, Bates JM. Dispersal ability correlates with range size in Amazonian habitat-restricted birds. Proceedings. Biological Sciences. 287: 20201450. PMID 33203330 DOI: 10.1098/rspb.2020.1450  0.385
2020 DuBay SG, Wu Y, Scott GR, Qu Y, Liu Q, Smith JH, Xin C, Hart Reeve A, Juncheng C, Meyer D, Wang J, Johnson J, Cheviron ZA, Lei F, Bates J. Life history predicts flight muscle phenotype and function in birds. The Journal of Animal Ecology. PMID 32124424 DOI: 10.1111/1365-2656.13190  0.376
2020 Marini MÂ, Hall L, Bates J, Steinheimer FD, McGowan R, Silveira LF, Lijtmaer DA, Tubaro PL, Córdoba-Córdoba S, Gamauf A, Greeney HF, Schweizer M, Kamminga P, Cibois A, Vallotton L, et al. The five million bird eggs in the world’s museum collections are an invaluable and underused resource The Auk. DOI: 10.1093/Auk/Ukaa036  0.302
2019 Bicudo TC, Sacek V, de Almeida RP, Bates JM, Ribas CC. Andean Tectonics and Mantle Dynamics as a Pervasive Influence on Amazonian Ecosystem. Scientific Reports. 9: 16879. PMID 31728046 DOI: 10.1038/S41598-019-53465-Y  0.36
2019 Soares LMdS, Bates J, Carneiro LS, Santos MPD, Aleixo A. Molecular systematics, biogeography and taxonomy of forest‐falcons in the Micrastur ruficollis species complex (Aves: Falconidae) Journal of Avian Biology. 50. DOI: 10.1111/Jav.01943  0.442
2018 Ferreira M, Fernandes AM, Aleixo A, Antonelli A, Olsson U, Bates JM, Cracraft J, C Ribas C. Evidence for mtDNA capture in the jacamar Galbula leucogastra / chalcothorax species-complex and insights on the evolution of white-sand ecosystems in the Amazon basin. Molecular Phylogenetics and Evolution. PMID 30026124 DOI: 10.1016/J.Ympev.2018.07.007  0.496
2018 Capurucho JMG, Ashley MV, Ribas CC, Bates JM. Connecting Amazonian, Cerrado, and Atlantic Forest histories: Paraphyly, old divergences, and modern population dynamics in tyrant-manakins (Neopelma/Tyranneutes, Aves: Pipridae). Molecular Phylogenetics and Evolution. PMID 29902573 DOI: 10.1016/J.Ympev.2018.06.015  0.424
2018 Berzaghi F, Engel JE, Plumptre AJ, Mugabe H, Kujirakwinja D, Ayebare S, Bates JM. Comparative niche modeling of two bush-shrikes (Laniarius) and the conservation of mid-elevation Afromontane forests of the Albertine Rift The Condor. 120: 803-814. DOI: 10.1650/Condor-18-28.1  0.446
2018 Azuaje‐Rodríguez RA, Weckstein JD, Dispoto JH, Patel S, Cacioppo JA, Bates JM, Silva SM, Aleixo A. Molecular systematics of the Amazonian endemic genus Hylexetastes (Aves: Dendrocolaptidae): taxonomic and conservation implications Ibis. 162: 119-136. DOI: 10.1111/Ibi.12693  0.69
2018 Crouch NMA, Capurucho JMG, Hackett SJ, Bates JM. Evaluating the contribution of dispersal to community structure in Neotropical passerine birds Ecography. 42: 390-399. DOI: 10.1111/Ecog.03927  0.517
2017 Fecchio A, Svensson-Coelho M, Bell J, Ellis VA, Medeiros MC, Trisos CH, Blake JG, Loiselle BA, Tobias JA, Fanti R, Coffey ED, DE Faria IP, Pinho JB, Felix G, Braga EM, ... ... Bates J, et al. Host associations and turnover of haemosporidian parasites in manakins (Aves: Pipridae). Parasitology. 1-10. PMID 28290270 DOI: 10.1017/S0031182017000208  0.698
2017 Kahindo CM, Bates JM, Bowie RCK. Population genetic structure of Grauer's Swamp Warbler Bradypterus graueri , an Albertine Rift endemic Ibis. 159: 415-429. DOI: 10.1111/Ibi.12453  0.474
2016 De Silva TN, Townsend Peterson A, Fernando SW, Bates JM, Marks BD, Girard M. Phylogenetic relationships of weaverbirds (Aves: Ploceidae): A first robust phylogeny based on mitochondrial and nuclear markers. Molecular Phylogenetics and Evolution. PMID 28012957 DOI: 10.1016/J.Ympev.2016.12.013  0.466
2016 Caballero IC, Bates JM, Hennen M, Ashley MV. Sex in the City: Breeding Behavior of Urban Peregrine Falcons in the Midwestern US. Plos One. 11: e0159054. PMID 27420915 DOI: 10.1371/Journal.Pone.0159054  0.33
2016 Gubili C, Ritter CD, Motta J, Farias IP, Bates J, Canton R, Capurucho JMG, Cornelius C, Feldheim KA, Ribas CC. Isolation and characterization of polymorphic microsatellite DNA Markers from an Amazonian white-sand vegetation specialist bird, Xenopipo atronitens (Aves: Pipridae) Wilson Journal of Ornithology. 128: 668-672. DOI: 10.1676/1559-4491-128.3.668  0.317
2016 Patitucci KF, Bates JM, Tkach VV. Mosesia ovalis n. sp. (Digenea: Phaneropsolidae) from the green manakin xenopipo holochlora from Peruvian Amazon with notes on morphology of Mosesia mosesi Travassos, 1921 Comparative Parasitology. 83: 49-53. DOI: 10.1654/1525-2647-83.1.49  0.401
2016 Wogan GOU, Feldheim KA, Tsai AS, Brown AA, Kapelke J, Galinato M, Tung JN, Bates JM, Kaliba P, Voelker G, Bowie RCK. New genetic resources and a preliminary multi-locus assessment of species boundaries in the Batis capensis species complex (Passeriformes: Platysteridae) Biochemical Systematics and Ecology. 65: 83-88. DOI: 10.1016/J.Bse.2016.01.007  0.511
2015 Winger BM, Hosner PA, Bravo GA, Cuervo AM, Aristizábal N, Cueto LE, Bates JM. Inferring speciation history in the Andes with reduced-representation sequence data: an example in the bay-backed antpittas (Aves; Grallariidae; Grallaria hypoleuca s. l.). Molecular Ecology. PMID 26576683 DOI: 10.1111/Mec.13477  0.483
2015 Dantas SM, Weckstein JD, Bates JM, Krabbe NK, Cadena CD, Robbins MB, Valderrama E, Aleixo A. Molecular systematics of the new world screech-owls (Megascops: Aves, Strigidae): biogeographic and taxonomic implications. Molecular Phylogenetics and Evolution. PMID 26456003 DOI: 10.1016/J.Ympev.2015.09.025  0.652
2015 Block NL, Goodman SM, Hackett SJ, Bates JM, Raherilalao MJ. Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites. Ecology and Evolution. 5: 3743-55. PMID 26380702 DOI: 10.1002/Ece3.1639  0.624
2015 Lawson LP, Bates JM, Menegon M, Loader SP. Divergence at the edges: peripatric isolation in the montane spiny throated reed frog complex. Bmc Evolutionary Biology. 15: 128. PMID 26126573 DOI: 10.1186/S12862-015-0384-3  0.782
2015 Lutz HL, Hochachka WM, Engel JI, Bell JA, Tkach VV, Bates JM, Hackett SJ, Weckstein JD. Correction: Parasite Prevalence Corresponds to Host Life History in a Diverse Assemblage of Afrotropical Birds and Haemosporidian Parasites. Plos One. 10: e0128851. PMID 25984782 DOI: 10.1371/journal.pone.0128851  0.69
2015 Lutz HL, Hochachka WM, Engel JI, Bell JA, Tkach VV, Bates JM, Hackett SJ, Weckstein JD. Parasite prevalence corresponds to host life history in a diverse assemblage of afrotropical birds and haemosporidian parasites. Plos One. 10: e0121254. PMID 25853491 DOI: 10.1371/Journal.Pone.0121254  0.725
2015 Winger BM, Bates JM. The tempo of trait divergence in geographic isolation: avian speciation across the Marañon Valley of Peru. Evolution; International Journal of Organic Evolution. 69: 772-87. PMID 25611790 DOI: 10.1111/Evo.12607  0.414
2015 Savit AZ, Bates JM. Right around the amazon: the origin of the circum- amazonian distribution in tangara cayana Folia Zoologica. 64: 273-283. DOI: 10.25225/Fozo.V64.I3.A8.2015  0.766
2015 Block NL, Goodman SM, Hackett SJ, Bates JM, Raherilalao MJ. Potential merger of ancient lineages in a passerine bird discovered based on evidence from host-specific ectoparasites Ecology and Evolution. DOI: 10.1002/ece3.1639  0.527
2014 Rocha LA, Aleixo A, Allen G, Almeda F, Baldwin CC, Barclay MV, Bates JM, Bauer AM, Benzoni F, Berns CM, Berumen ML, Blackburn DC, Blum S, Bolaños F, Bowie RC, et al. Specimen collection: an essential tool. Science (New York, N.Y.). 344: 814-5. PMID 24855245 DOI: 10.1126/Science.344.6186.814  0.77
2014 Diehl RH, Bates JM, Willard DE, Gnoske TP. Bird mortality during nocturnal migration over Lake Michigan: A case study Wilson Journal of Ornithology. 126: 19-29. DOI: 10.1676/12-191.1  0.364
2014 Tello JG, Raposo M, Bates JM, Bravo GA, Cadena CD, Maldonado-Coelho M. Reassessment of the systematics of the widespread Neotropical genus Cercomacra (Aves: Thamnophilidae) Zoological Journal of the Linnean Society. 170: 546-565. DOI: 10.1111/Zoj.12116  0.772
2014 Engel JI, Byamana K, Kahindo C, Bates JM, Fjeldså J. Genetic structure offers insights into the evolution of migration and the taxonomy of the Barred Long-tailed Cuckoo Cercococcyx montanus species complex Ibis. 156: 330-340. DOI: 10.1111/Ibi.12145  0.484
2014 Ritter CD, Figueiredo CMÉ, Gubili C, Feldheim KA, Bates J, Cornelius C, Ribas CC. Isolation and characterization of seventeen polymorphic microsatellite DNA markers from Elaenia ruficeps (Aves: Tyrannidae) Conservation Genetics Resources. 6: 1015-1018. DOI: 10.1007/S12686-014-0273-X  0.39
2013 Stanley WT, Robbins LW, Malekani JM, Mbalitini SG, Migurimu DA, Mukinzi JC, Hulselmans J, Prévot V, Verheyen E, Hutterer R, Doty JB, Monroe BP, Nakazawa YJ, Braden Z, Carroll D, ... ... Bates JM, et al. A new hero emerges: another exceptional mammalian spine and its potential adaptive significance. Biology Letters. 9: 20130486. PMID 23883579 DOI: 10.1098/Rsbl.2013.0486  0.448
2013 Lutz HL, Weckstein JD, Patané JS, Bates JM, Aleixo A. Biogeography and spatio-temporal diversification of Selenidera and Andigena toucans (Aves: Ramphastidae). Molecular Phylogenetics and Evolution. 69: 873-83. PMID 23831458 DOI: 10.1016/J.Ympev.2013.06.017  0.736
2013 Engel JI, Bates JM, Weckstein JD, Gnoske TP, Kaliba PM. Avifauna of Vwaza Marsh Wildlife Reserve, Malawi Journal of East African Natural History. 101: 223-240. DOI: 10.2982/028.101.0202  0.694
2011 Patel S, Weckstein JD, Patané JS, Bates JM, Aleixo A. Temporal and spatial diversification of Pteroglossus araçaris (AVES: Ramphastidae) in the neotropics: constant rate of diversification does not support an increase in radiation during the Pleistocene. Molecular Phylogenetics and Evolution. 58: 105-15. PMID 21055476 DOI: 10.1016/J.Ympev.2010.10.016  0.721
2011 Kaleme PK, Bates JM, Belesi HK, Bowie RCK, Gambalemoke M, Kerbis-Peterhans J, Michaux J, Mwanga JM, Ndara BR, Taylor PJ, Van Vuuren BJ. Origin and putative colonization routes for invasive rodent taxa in the democratic Republic of Congo African Zoology. 46: 133-145. DOI: 10.3377/004.046.0104  0.419
2010 Voelker G, Outlaw RK, Reddy S, Tobler M, Bates JM, Hackett SJ, Kahindo C, Marks BD, Kerbis Peterhans JC, Gnoske TP. A new species of boubou (Malaconotidae: Laniarius) from the albertine rift Auk. 127: 678-689. DOI: 10.1525/Auk.2010.09014  0.594
2009 Patané JS, Weckstein JD, Aleixo A, Bates JM. Evolutionary history of Ramphastos toucans: molecular phylogenetics, temporal diversification, and biogeography. Molecular Phylogenetics and Evolution. 53: 923-34. PMID 19699308 DOI: 10.1016/J.Ympev.2009.08.017  0.649
2009 Bueter C, Weckstein J, Johnson KP, Bates JM, Gordon CE. Comparative phylogenetic histories of two louse genera found on Catharus thrushes and other birds. The Journal of Parasitology. 95: 295-307. PMID 18821823 DOI: 10.1645/Ge-1642.1  0.681
2008 Tobias JA, Bates JM, Hackett SJ, Seddon N. Comment on "The latitudinal gradient in recent speciation and extinction rates of birds and mammals". Science (New York, N.Y.). 319: 901; author reply 90. PMID 18276872 DOI: 10.1126/Science.1150568  0.627
2007 Kaleme PK, Bates J, Peterans JK, Jacques MM, Ndara BR. Small mammal diversity and habitat requirements in the Kahuzi-Biega National Park and surrounding areas, eastern Democratic Republic of Congo. Integrative Zoology. 2: 239-246. PMID 21396041 DOI: 10.1111/J.1749-4877.2007.00066.X  0.505
2007 Carnaval AC, Bates JM. Amphibian DNA shows marked genetic structure and tracks pleistocene climate change in northeastern Brazil. Evolution; International Journal of Organic Evolution. 61: 2942-57. PMID 17941838 DOI: 10.1111/J.1558-5646.2007.00241.X  0.721
2007 Tello JG, Bates JM. Molecular phylogenetics of the tody-tyrant and flatbill assemblage of tyrant flycatchers (Tyrannidae) Auk. 124: 134-154. DOI: 10.1642/0004-8038(2007)124[134:Mpotta]2.0.Co;2  0.774
2007 Cadena CD, López-Lanús B, Bates JM, Krabbe N, Rice NH, Stiles FG, Palacio JD, Salaman P. A rare case of interspecific hybridization in the tracheophone suboscines: Chestnut-naped Antpitta Grallaria nuchalis x Chestnut-crowned Antpitta G. ruficapilla in a fragmented Andean landscape Ibis. 149: 814-825. DOI: 10.1111/J.1474-919X.2007.00717.X  0.364
2007 Kahindo C, Bowie RCK, Bates JM. The relevance of data on genetic diversity for the conservation of Afro-montane regions Biological Conservation. 134: 262-270. DOI: 10.1016/J.Biocon.2006.08.019  0.447
2006 Bowie RC, Fjeldså J, Hackett SJ, Bates JM, Crowe TM. Coalescent models reveal the relative roles of ancestral polymorphism, vicariance, and dispersal in shaping phylogeographical structure of an African montane forest robin. Molecular Phylogenetics and Evolution. 38: 171-88. PMID 16024259 DOI: 10.1016/J.Ympev.2005.06.001  0.618
2006 Tello JG, Degner JF, Bates JM, Willard DE. A New Species of Hanging-Parrot (Aves: Psittacidae: Loriculus) from Camiguin Island, Philippines Fieldiana Zoology. 106: 49-57. DOI: 10.3158/0015-0754(2006)106[49:Ansoha]2.0.Co;2  0.766
2005 Braun MJ, Isler ML, Isler PR, Bates JM, Robbins MB. Avian speciation in the pantepui: The case of the Roraiman Antbird (Percnostola [Schistocichla] "leucostigma" saturata) Condor. 107: 327-341. DOI: 10.1650/7647  0.493
2004 Bates JM, Haffer J, Grismer E. Avian mitochondrial DNA sequence divergence across a headwater stream of the Rio Tapajós, a major Amazonian river Journal of Ornithology. 145: 199-205. DOI: 10.1007/S10336-004-0039-4  0.504
2003 Bates JM, Tello JG, Da Silva JMC. Initial assessment of genetic diversity in ten bird species of South American Cerrado Studies On Neotropical Fauna and Environment. 38: 87-94. DOI: 10.1076/Snfe.38.2.87.15924  0.801
2002 Da Silva JMC, Bates JM. Biogeographics patterns and coservation in the South American Cerrado: A tropical savanna hotspot Bioscience. 52: 225-233. DOI: 10.1641/0006-3568(2002)052[0225:Bpacit]2.0.Co;2  0.358
2002 Bates JM. The genetic effects of forest fragmentation on five species of Amazonian birds Journal of Avian Biology. 33: 276-294. DOI: 10.1034/J.1600-048X.2002.330310.X  0.47
2001 Kirchman JJ, Hackett SJ, Goodman SM, Bates JM. Phylogeny and systematics of ground rollers (Brachypteraciidae) of Madagascar Auk. 118: 849-863. DOI: 10.1642/0004-8038(2001)118[0849:Pasogr]2.0.Co;2  0.626
2001 Bates JM, Demos TC. Do we need to devalue Amazonia and other large tropical forests? Diversity and Distributions. 7: 249-255. DOI: 10.1046/J.1366-9516.2001.00112.X  0.376
2000 Bates JM. Allozymic genetic structure and natural habitat fragmentation: Data for five species of Amazonian forest birds Condor. 102: 770-783. DOI: 10.1650/0010-5422(2000)102[0770:Agsanh]2.0.Co;2  0.466
1999 Bates JM, Hackett SJ, Goerck JM. High levels of mitochondrial DNA differentiation in two lineages of antbirds (Drymophila and Hypocnemis) Auk. 116: 1093-1106. DOI: 10.2307/4089688  0.669
1998 Bates JM, Hackett SJ, Cracraft J. Area-relationships in the Neotropical lowlands: An hypothesis based on raw distributions of Passerine birds Journal of Biogeography. 25: 783-793. DOI: 10.1046/J.1365-2699.1998.2540783.X  0.644
1997 Bates JM, Schulenberg TS. In Memoriam: Theodore A. Parker III, 1953-1993 The Auk. 114: 110-110. DOI: 10.2307/4089070  0.325
1995 Hackett SJ, Griffiths CS, Bates JM, Klein NK. Re: A commentary on the use of sequence data for phylogeny reconstruction. Molecular Phylogenetics and Evolution. 4: 350-6. PMID 8845969 DOI: 10.1006/Mpev.1995.1030  0.542
1994 Bates JM, Zink RM. Evolution into the Andes: Molecular evidence for species relationships in the genus Leptopogon Auk. 111: 507-515.  0.633
1993 Bates JM. Birds of Southwestern Brazil: Catalogue and Guide to the Birds of the Pantanal of Mato Grosso and Its Border Areas Balthasar Dubs The Auk. 110: 661-661. DOI: 10.2307/4088436  0.35
1991 Bennett GF, Garvin M, Bates JM. Avian hematozoa from west-central Bolivia. The Journal of Parasitology. 77: 207-11. PMID 1901358 DOI: 10.2307/3283083  0.326
Show low-probability matches.