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Jeongsik Yong, Ph.D. - Publications

Affiliations: 
University of Pennsylvania, Philadelphia, PA, United States 
Area:
Spinal Muscular Atrophy, RNA binding proteins, Splicing, High-Throughput Screening
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34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Cheng S, Park M, Yong J. RNA and Protein Interactomes of an RNA-Binding Protein Tagged with FLAG Epitopes Using Combinatory Approaches of Genome Engineering and Stable Transfection. Methods in Molecular Biology (Clifton, N.J.). 2666: 247-263. PMID 37166670 DOI: 10.1007/978-1-0716-3191-1_18  0.383
2022 Fahmi NA, Ahmed KT, Chang JW, Nassereddeen H, Fan D, Yong J, Zhang W. APA-Scan: detection and visualization of 3'-UTR alternative polyadenylation with RNA-seq and 3'-end-seq data. Bmc Bioinformatics. 23: 396. PMID 36171568 DOI: 10.1186/s12859-022-04939-w  0.368
2020 Zhang W, Petegrosso R, Chang JW, Sun J, Yong J, Chien J, Kuang R. A large-scale comparative study of isoform expressions measured on four platforms. Bmc Genomics. 21: 272. PMID 32228441 DOI: 10.1186/S12864-020-6643-8  0.328
2019 Sun J, Chang JW, Zhang T, Yong J, Kuang R, Zhang W. Platform-integrated mRNA Isoform Quantification. Bioinformatics (Oxford, England). PMID 31834359 DOI: 10.1093/Bioinformatics/Btz932  0.446
2019 Chang JW, Yeh HS, Park M, Erber L, Sun J, Cheng S, Bui AM, Fahmi NA, Nasti R, Kuang R, Chen Y, Zhang W, Yong J. mTOR-regulated U2af1 tandem exon splicing specifies transcriptome features for translational control. Nucleic Acids Research. PMID 31504847 DOI: 10.1093/Nar/Gkz761  0.427
2018 Chang JW, Zhang W, Yeh HS, Park M, Yao C, Shi Y, Kuang R, Yong J. An integrative model for alternative polyadenylation, IntMAP, delineates mTOR-modulated endoplasmic reticulum stress response. Nucleic Acids Research. PMID 29733382 DOI: 10.1093/Nar/Gky340  0.416
2017 Chang JW, Yeh HS, Yong J. Alternative Polyadenylation in Human Diseases. Endocrinology and Metabolism (Seoul, Korea). 32: 413-421. PMID 29271615 DOI: 10.3803/Enm.2017.32.4.413  0.456
2017 Yeh HS, Zhang W, Yong J. Analyses of alternative polyadenylation: from old school biochemistry to high-throughput technologies. Bmb Reports. PMID 28148393 DOI: 10.5483/Bmbrep.2017.50.4.019  0.387
2016 Yeh HS, Chang JW, Yong J. Ribo-Proteomics Approach to Profile RNA-Protein and Protein-Protein Interaction Networks. Methods in Molecular Biology (Clifton, N.J.). 1421: 165-74. PMID 26965265 DOI: 10.1007/978-1-4939-3591-8_14  0.5
2016 Liu C, Stonestrom AJ, Christian T, Yong J, Takase R, Hou YM, Yang X. Molecular Basis and Consequences of the Cytochrome c-tRNA Interaction. The Journal of Biological Chemistry. PMID 26961879 DOI: 10.1074/Jbc.M115.697789  0.339
2016 Yeh HS, Yong J. Alternative Polyadenylation of mRNAs: 3'-Untranslated Region Matters in Gene Expression. Molecules and Cells. PMID 26912084 DOI: 10.14348/Molcells.2016.0035  0.355
2015 Zhang W, Chang JW, Lin L, Minn K, Wu B, Chien J, Yong J, Zheng H, Kuang R. Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis. Plos Computational Biology. 11: e1004465. PMID 26699225 DOI: 10.1371/Journal.Pcbi.1004465  0.429
2015 Chang JW, Zhang W, Yeh HS, de Jong EP, Jun S, Kim KH, Bae SS, Beckman K, Hwang TH, Kim KS, Kim DH, Griffin TJ, Kuang R, Yong J. mRNA 3'-UTR shortening is a molecular signature of mTORC1 activation. Nature Communications. 6: 7218. PMID 26074333 DOI: 10.1038/Ncomms8218  0.463
2013 den Engelsman J, van de Schootbrugge C, Yong J, Pruijn GJ, Boelens WC. Pseudophosphorylated αB-crystallin is a nuclear chaperone imported into the nucleus with help of the SMN complex. Plos One. 8: e73489. PMID 24023879 DOI: 10.1371/Journal.Pone.0073489  0.432
2012 Gruber JJ, Olejniczak SH, Yong J, La Rocca G, Dreyfuss G, Thompson CB. Ars2 promotes proper replication-dependent histone mRNA 3' end formation. Molecular Cell. 45: 87-98. PMID 22244333 DOI: 10.1016/J.Molcel.2011.12.020  0.6
2011 Zhang R, So BR, Li P, Yong J, Glisovic T, Wan L, Dreyfuss G. Structure of a key intermediate of the SMN complex reveals Gemin2's crucial function in snRNP assembly. Cell. 146: 384-95. PMID 21816274 DOI: 10.1016/J.Cell.2011.06.043  0.763
2010 Mei Y, Yong J, Stonestrom A, Yang X. tRNA and cytochrome c in cell death and beyond. Cell Cycle (Georgetown, Tex.). 9: 2936-9. PMID 20676046 DOI: 10.4161/Cc.9.15.12316  0.382
2010 Yong J, Kasim M, Bachorik JL, Wan L, Dreyfuss G. Gemin5 delivers snRNA precursors to the SMN complex for snRNP biogenesis. Molecular Cell. 38: 551-62. PMID 20513430 DOI: 10.1016/J.Molcel.2010.03.014  0.737
2010 Mei Y, Yong J, Liu H, Shi Y, Meinkoth J, Dreyfuss G, Yang X. tRNA binds to cytochrome c and inhibits caspase activation. Molecular Cell. 37: 668-78. PMID 20227371 DOI: 10.1016/J.Molcel.2010.01.023  0.537
2009 Gruber JJ, Zatechka DS, Sabin LR, Yong J, Lum JJ, Kong M, Zong WX, Zhang Z, Lau CK, Rawlings J, Cherry S, Ihle JN, Dreyfuss G, Thompson CB. Ars2 links the nuclear cap-binding complex to RNA interference and cell proliferation. Cell. 138: 328-39. PMID 19632182 DOI: 10.1016/J.Cell.2009.04.046  0.552
2008 Glisovic T, Bachorik JL, Yong J, Dreyfuss G. RNA-binding proteins and post-transcriptional gene regulation. Febs Letters. 582: 1977-86. PMID 18342629 DOI: 10.1016/J.Febslet.2008.03.004  0.669
2006 Battle DJ, Kasim M, Yong J, Lotti F, Lau CK, Mouaikel J, Zhang Z, Han K, Wan L, Dreyfuss G. The SMN complex: an assembly machine for RNPs. Cold Spring Harbor Symposia On Quantitative Biology. 71: 313-20. PMID 17381311 DOI: 10.1101/Sqb.2006.71.001  0.799
2005 Golembe TJ, Yong J, Dreyfuss G. Specific sequence features, recognized by the SMN complex, identify snRNAs and determine their fate as snRNPs. Molecular and Cellular Biology. 25: 10989-1004. PMID 16314521 DOI: 10.1128/Mcb.25.24.10989-11004.2005  0.727
2005 Wan L, Battle DJ, Yong J, Gubitz AK, Kolb SJ, Wang J, Dreyfuss G. The survival of motor neurons protein determines the capacity for snRNP assembly: biochemical deficiency in spinal muscular atrophy. Molecular and Cellular Biology. 25: 5543-51. PMID 15964810 DOI: 10.1128/Mcb.25.13.5543-5551.2005  0.749
2005 Golembe TJ, Yong J, Battle DJ, Feng W, Wan L, Dreyfuss G. Lymphotropic Herpesvirus saimiri uses the SMN complex to assemble Sm cores on its small RNAs. Molecular and Cellular Biology. 25: 602-11. PMID 15632062 DOI: 10.1128/Mcb.25.2.602-611.2005  0.78
2004 Yong J, Wan L, Dreyfuss G. Why do cells need an assembly machine for RNA-protein complexes? Trends in Cell Biology. 14: 226-32. PMID 15130578 DOI: 10.1016/J.Tcb.2004.03.010  0.761
2004 Yong J, Golembe TJ, Battle DJ, Pellizzoni L, Dreyfuss G. snRNAs contain specific SMN-binding domains that are essential for snRNP assembly. Molecular and Cellular Biology. 24: 2747-56. PMID 15024064 DOI: 10.1128/Mcb.24.7.2747-2756.2004  0.801
2002 Pellizzoni L, Yong J, Dreyfuss G. Essential role for the SMN complex in the specificity of snRNP assembly. Science (New York, N.Y.). 298: 1775-9. PMID 12459587 DOI: 10.1126/Science.1074962  0.744
2002 Yong J, Pellizzoni L, Dreyfuss G. Sequence-specific interaction of U1 snRNA with the SMN complex. The Embo Journal. 21: 1188-96. PMID 11867547 DOI: 10.1093/Emboj/21.5.1188  0.69
2001 Kataoka N, Diem MD, Kim VN, Yong J, Dreyfuss G. Magoh, a human homolog of Drosophila mago nashi protein, is a component of the splicing-dependent exon-exon junction complex. The Embo Journal. 20: 6424-33. PMID 11707413 DOI: 10.1093/Emboj/20.22.6424  0.802
2001 Mourelatos Z, Abel L, Yong J, Kataoka N, Dreyfuss G. SMN interacts with a novel family of hnRNP and spliceosomal proteins. The Embo Journal. 20: 5443-52. PMID 11574476 DOI: 10.1093/Emboj/20.19.5443  0.65
2001 Kim VN, Yong J, Kataoka N, Abel L, Diem MD, Dreyfuss G. The Y14 protein communicates to the cytoplasm the position of exon-exon junctions. The Embo Journal. 20: 2062-8. PMID 11296238 DOI: 10.1093/Emboj/20.8.2062  0.768
2000 Kataoka N, Yong J, Kim VN, Velazquez F, Perkinson RA, Wang F, Dreyfuss G. Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm. Molecular Cell. 6: 673-82. PMID 11030346 DOI: 10.1016/S1097-2765(00)00065-4  0.65
2000 Charroux B, Pellizzoni L, Perkinson RA, Yong J, Shevchenko A, Mann M, Dreyfuss G. Gemin4. A novel component of the SMN complex that is found in both gems and nucleoli. The Journal of Cell Biology. 148: 1177-86. PMID 10725331 DOI: 10.1083/Jcb.148.6.1177  0.713
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