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Ajay Gopinathan, Ph.D. - Publications

Affiliations: 
2006- Physics University of California, Merced, Merced, CA, United States 
Area:
Biophysics, soft matter, polymers,
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Shi H, Quint DA, Grason GM, Gopinathan A, Huang KC. Chiral twisting in a bacterial cytoskeletal polymer affects filament size and orientation. Nature Communications. 11: 1408. PMID 32179732 DOI: 10.1038/S41467-020-14752-9  0.373
2019 Maelfeyt B, Tabei SMA, Gopinathan A. Anomalous intracellular transport phases depend on cytoskeletal network features. Physical Review. E. 99: 062404. PMID 31330659 DOI: 10.1103/Physreve.99.062404  0.322
2019 Lopes J, Quint DA, Chapman DE, Xu M, Gopinathan A, Hirst LS. Membrane mediated motor kinetics in microtubule gliding assays. Scientific Reports. 9: 9584. PMID 31270348 DOI: 10.1038/S41598-019-45847-Z  0.35
2019 Wilson JO, Quint DA, Gopinathan A, Xu J. Cargo diffusion shortens single-kinesin runs at low viscous drag. Scientific Reports. 9: 4104. PMID 30858425 DOI: 10.1016/J.Bpj.2019.11.2418  0.354
2018 Ro S, Gopinathan A, Kim YW. Interactions between a fluctuating polymer barrier and transport factors together with enzyme action are sufficient for selective and rapid transport through the nuclear pore complex. Physical Review. E. 98: 012403. PMID 30110828 DOI: 10.1103/Physreve.98.012403  0.364
2017 Ando D, Gopinathan A. Cooperative Interactions between Different Classes of Disordered Proteins Play a Functional Role in the Nuclear Pore Complex of Baker's Yeast. Plos One. 12: e0169455. PMID 28068389 DOI: 10.1371/Journal.Pone.0169455  0.738
2016 Quint DA, Gopinathan A, Grason GM. Shape Selection of Surface-Bound Helical Filaments: Biopolymers on Curved Membranes. Biophysical Journal. 111: 1575-1585. PMID 27705779 DOI: 10.1016/J.Bpj.2016.08.017  0.301
2016 Li Q, King SJ, Gopinathan A, Xu J. Quantitative Determination of the Probability of Multiple-Motor Transport in Bead-Based Assays. Biophysical Journal. 110: 2720-2728. PMID 27332130 DOI: 10.1016/J.Bpj.2016.05.015  0.35
2016 Liang WH, Li Q, Rifat Faysal KM, King SJ, Gopinathan A, Xu J. Microtubule Defects Influence Kinesin-Based Transport In Vitro. Biophysical Journal. 110: 2229-2240. PMID 27224488 DOI: 10.1016/J.Bpj.2016.04.029  0.363
2016 Connolly TG, Ando D, Newsam SD, Gopinathan A, Colvin ME. Universal Metrics of Interstructure Distance for Flexible and Intrinsically Disordered Proteins Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.3445  0.749
2016 Liang WH, Li Q, Faysal K, King SJ, Gopinathan A, Xu J. Impacts of Microtubule Structural Defects on Kinesin-Based Transport Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1075  0.365
2015 Ando D, Korabel N, Huang KC, Gopinathan A. Cytoskeletal Network Morphology Regulates Intracellular Transport Dynamics. Biophysical Journal. 109: 1574-82. PMID 26488648 DOI: 10.1016/J.Bpj.2015.08.034  0.726
2015 Quint DA, Gopinathan A. Topologically induced swarming phase transition on a 2D percolated lattice. Physical Biology. 12: 046008. PMID 26083125 DOI: 10.1088/1478-3975/12/4/046008  0.345
2014 Ando D, Mattson MK, Xu J, Gopinathan A. Cooperative protofilament switching emerges from inter-motor interference in multiple-motor transport. Scientific Reports. 4: 7255. PMID 25434968 DOI: 10.1038/Srep07255  0.728
2014 Ando D, Zandi R, Kim YW, Colvin M, Rexach M, Gopinathan A. Nuclear pore complex protein sequences determine overall copolymer brush structure and function. Biophysical Journal. 106: 1997-2007. PMID 24806932 DOI: 10.1016/J.Bpj.2014.03.021  0.754
2014 Ando D, Xu J, Gopinathan A. Enhanced Transverse Motion of Multiple Kinesin Motor Configurations via a Diffusive Weakly Bound State Biophysical Journal. 106: 781a. DOI: 10.1016/J.Bpj.2013.11.4282  0.719
2014 Quint DA, Grason GM, Gopinathan A. Structural Transitions of Membrane-Bound Chiral Biopolymers Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.4052  0.344
2014 Wang RL, Connolly TG, Phillips JL, Miguel AV, Gopinathan A, Newsam SD, Colvin ME. Comparison of Metrics of Inter-Structure Distance When Applied to Molecular Dynamics Simulations of Intrinsically Disordered Proteins Biophysical Journal. 106: 610a-611a. DOI: 10.1016/J.Bpj.2013.11.3377  0.393
2014 Connolly TG, Ando D, Wang RL, Gopinathan A, Newsam SD, Colvin ME. Identifying Local Regions of Order and Disorder in FG-Nucleoporins and Partially Disordered Proteins Using Molecular Dynamics Simulations Biophysical Journal. 106: 608a. DOI: 10.1016/J.Bpj.2013.11.3363  0.745
2014 Ando D, Colvin M, Rexach M, Gopinathan A. Physical Bioinformatics Applied to Intrinsically Disordered Nucleoporin Sequences Reveals Universal Functional Features Biophysical Journal. 106: 484a. DOI: 10.1016/J.Bpj.2013.11.2734  0.747
2014 Doornenbal J, Shaheed I, Miguel A, Ando D, Gopinathan A. Conformational Properties of Kinesin's Neck Linker Across Species Biophysical Journal. 106. DOI: 10.1016/J.Bpj.2013.11.1483  0.748
2013 Ando D, Colvin M, Rexach M, Gopinathan A. Physical motif clustering within intrinsically disordered nucleoporin sequences reveals universal functional features. Plos One. 8: e73831. PMID 24066078 DOI: 10.1371/Journal.Pone.0073831  0.746
2013 Tsekouras K, Goncharenko I, Colvin ME, Huang KC, Gopinathan A. Design of High-Specificity Nanocarriers by Exploiting Non-Equilibrium Effects in Cancer Cell Targeting. Plos One. 8: e65623. PMID 23840346 DOI: 10.1371/Journal.Pone.0065623  0.722
2012 Hsin J, Gopinathan A, Huang KC. Nucleotide-dependent conformations of FtsZ dimers and force generation observed through molecular dynamics simulations. Proceedings of the National Academy of Sciences of the United States of America. 109: 9432-7. PMID 22647609 DOI: 10.1073/Pnas.1120761109  0.347
2012 Quint DA, Gopinathan A, Grason GM. Conformational collapse of surface-bound helical filaments Soft Matter. 8: 9460-9468. DOI: 10.1039/C2Sm25798J  0.313
2012 Miguel AV, Phillips JL, Ando D, Gopinathan A, Lau EY, Rexach MF, Colvin ME. Conformational Sampling of FG-Nucleoporins using Extended Molecular Dynamics Simulations Biophysical Journal. 102: 632a. DOI: 10.1016/J.Bpj.2011.11.3443  0.746
2012 Phillips J, Gopinathan A, Newsam S, Colvin ME. Dimensionality Estimation of Disordered Protein Dynamics Biophysical Journal. 102: 451a. DOI: 10.1016/J.Bpj.2011.11.2476  0.394
2012 Theriot J, Halladin D, Trepagnier E, Ursell T, Gopinathan A, Huang K. Spatial Patterns of Protein Secretion on Bacterial Surfaces Biophysical Journal. 102: 31a. DOI: 10.1016/J.Bpj.2011.11.195  0.322
2012 Rexach M, Colvin M, Gopinathan A, Krishnan K, Lau E, Newsam S, Phillips J, Uversky V, Yamada J. Sorting with Disorder at Nuclear Pores Biophysical Journal. 102: 2a. DOI: 10.1016/J.Bpj.2011.11.024  0.393
2011 Huang KC, Vega C, Gopinathan A. Conformational changes, diffusion and collective behavior in monomeric kinesin-based motility. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 23: 374106. PMID 21862841 DOI: 10.1088/0953-8984/23/37/374106  0.341
2011 Lee KC, Gopinathan A, Schwarz JM. Modeling the formation of in vitro filopodia. Journal of Mathematical Biology. 63: 229-61. PMID 20957371 DOI: 10.1007/S00285-010-0371-7  0.307
2010 Goncharenko I, Gopinathan A. Vicious Lévy flights. Physical Review Letters. 105: 190601. PMID 21231158 DOI: 10.1103/Physrevlett.105.190601  0.731
2010 Goncharenko I, Gopinathan A. Vicious walks with long-range interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 82: 011126. PMID 20866584 DOI: 10.1103/Physreve.82.011126  0.73
2010 Yamada J, Phillips JL, Patel S, Goldfien G, Calestagne-Morelli A, Huang H, Reza R, Acheson J, Krishnan VV, Newsam S, Gopinathan A, Lau EY, Colvin ME, Uversky VN, Rexach MF. A bimodal distribution of two distinct categories of intrinsically disordered structures with separate functions in FG nucleoporins. Molecular & Cellular Proteomics : McP. 9: 2205-24. PMID 20368288 DOI: 10.1074/Mcp.M000035-Mcp201  0.367
2010 Gopinathan A, Kim YW, Zandi R, Colvin M, Rexach M. Polymer Brushes and the Nuclear Pore Complex Biophysical Journal. 98: 308a. DOI: 10.1016/J.Bpj.2009.12.1676  0.391
2004 Gopinathan A, Witten TA. Defect formation and kinetics of atomic terrace merging. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 041603. PMID 15600417 DOI: 10.1103/Physreve.70.041603  0.535
2004 Gopinathan A, Grier DG. Statistically locked-in transport through periodic potential landscapes. Physical Review Letters. 92: 130602. PMID 15089591 DOI: 10.1103/Physrevlett.92.130602  0.309
2002 Gopinathan A, Witten TA, Venkataramani SC. Trapping of vibrational energy in crumpled sheets. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 036613. PMID 11909291 DOI: 10.1103/Physreve.65.036613  0.503
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